>input_sequence_76761
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-------ATGGCTCCCCACCCACCGGTCCTCCTGCTACTGCTCCTCGCGCCGCTCCTCCTCTGCTCGCTGCTCCCCGATG
CGGCGCGGGCGGCCGGCGCCGAGGACACCGGGGTGACCATCGTGCGCAAGGACGGCACGACCTGCACGCTCTGCGCCTCC
TGCGGGAACCCCTGCAACCCCAACCCGGGATACAACTACCCGTCGCCACCTCCTCCGGCTCCGGTGACCCCCGCGGCGCC
GGTGTACCCGCCTCCCACTTCCTACCCAGCTCCCTCCGGTGGAGGAGGCGGTGGCGGTGGCTACTTCTACCCTCCGCCCA
CCGGCGGGTACGGAGGAGGAGGCGGC---GGCGGCGGGTCGCAAGGAGGACAAGG---AGGAGGAGGTGGAGGCGGTGCG
TACCCGACGCCCCCGCCGCCCAACCCGTTCCTACCCTACTTCCCCTTCTACTACTACAGCCCGCCACCCCAGCTCAAGGG
CTCGGCGCCGGCCGTCTCGTCGTCCGCCGCGG---CGACGCTACTGCTGCTCGGGCTCTCCGGGCTGCTGCTGTGGT---
GA------------------------------------------------------------------------------
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--
>chr3A_1_TraesCS3A01G497200
GCTTGTCAGTGTGCTTGTAACTTGACCACCTCCACGAGGAGGTTACCAGCCGACGTGCGTTGCATGTAACGAAACAACCT
AAATTATGTTTTTACCTAAACAAGCTCACAACTGAACAACATGACTTT-GTTTATTTGTAACCGGGCTAGAGGATATGCA
GGCAATCAAACAACATGCAGATCATTGTTTTTAAGACTATATTGACTCAACTAGGCTCAATTGGAACAAATATGCAATGC
AGGCAAGCAAACACGGGCAAGTGCACATTGCCATGATTTTTTGCCACTGTGGAACAC--TGCGTCCGGTGCATTTTTGTC
GTGATTTATATTGTGGTGGTTTTTTGTT-------------------------AATCAGCACACTTTTGCGGTGGCTTTA
CGCATTTCACTCCCTAGACGCGGCACGGTTGAGTGATTAGCGAGGTGGGTTGTGAACACCGTGGCGATCTCCCTAAACTA
ATCGCAAAATGCGCAAATCATTCGGCCTTTTGCCTCTCGGCGAAACTGCTCCCGGCTTGCTCCGACGTAGCGCGCTGTGC
CCATGTGTAAA-----AAGGACCATGTGTAAAACGCCAAGGTCACT---CGCGCTGGCCGGCACCGGGCGCGCGCGAGCG
GTGCGCCGCCACCGCACCCGTCAGCTAGCGACAACGGCTCCAGCGGTCGGCCAACGCGCCCCACGCGCTCCGCTCCACCA
CCTACTGTACCGCACCAAAAGCCACCGCTTCCCTTCTCCTCTGCTCGGCGCACGCCTCCG-TTCGCGTACCGACGGACGG
GCGGGCGGACAGCGCAGCGCAGCTTCCGGCCACGCCACGCGTGGGCGTGGCTTCCTACCGTCCACGGATCCGCCGTCGAT
CTGGAGGGCCGACAAACGCCGCCCCGCTTTCCGCTGC----------CCACTGGATTAAGTACCACTCCCCTCACCCCGA
GACAGTCAGCTTCACAGCCTTCACTACTCACTCACTCAAGCTCCCACTCCCACTCCCATCCCCATCACCAACCCCTCCCA
CATAGTCATGGCTCCCCACCCACCGGTCCTCCTGCTACTGCTCCTCGCGCCGCTCCTCCTCTGCTCGCTGCTCCCCGATG
CGGCGCGGGCGGCCGGCGCCGAGGACACCGGGGTGACCATCGTGCGCAAGGACGGCACGACCTGCACGCTCTGCGCCTCC
TGCGGGAACCCCTGCAACCCCAACCCGGGATACAACTACCCGTCGCCACCTCCTCCGGCTCCGGTGACCCCCGCGGCGCC
GGTGTACCCGCCTCCCACTTCCTACCCAGCTCCCTCCGGTGGAGGAGGCGGTGGCGGTGGCTACTTCTACCCTCCGCCCA
CCGGCGGGTACGGAGGAGGAGGCGGC---GGCGGCGGGTCGCAAGGAGGACAAGG---AGGAGGAGGTGGAGGCGGTGCG
TACCCGACGCCCCCGCCGCCCAACCCGTTCCTACCCTACTTCCCCTTCTACTACTACAGCCCGCCACCCCAGCTCAAGGG
CTCGGCGCCGGCCGTCTCGTCGTCCGCCGCGG---CGACGCTACTGCTGCTCGGGCTCTCCGGGCTGCTGCTGTGGT---
GAGGAGGACGACGGTGAGAACGCGAGGTAGATCTGCCGAGCTGACGCGCTCAGTGGATCCAATCA--------GCTGGCT
GGCTGGCTGCATCTGCACTGCAGTAAT-TTCGATTTTATTTATTTATTCACCGCTGTAATTTTCTCTA-TTTTTTGCTCC
TCCCTCCTCTCTGCTTCTGTGATTTATTGTG---TGCCGGTATAGAACT---ATATAGGAGACCGTACCAAGTGTAAACC
AAGGGCGACTAATAATAAAGCACCAGTGCTGTTTTATATAGATGGATCTG------GTGATTAAGATGTTCATGCCAAAG
GGAGGA-----AGCTGCTCATCTCTCTCTTTGATTGGTTGAGGCGTTGGCAAAACGAATGTGCATCATATGGATCCGATT
ACATGCAGAGGCCGGGGGTCATACTCCTTTAAAAAAAAATATGGATCCGATTACGATGTCATTGTTCTGCTGACATCTCT
ATCTCTCACCGTGCTATGCTGGCGACAGCCCTTGCGTGTGCTGGTTAAGGTTTGCGCTGTTGGATGGCAGTTCT---TCA
GTTCTTGGGCTGGATGTGCAGCGTAGCTTTAGAATAAGAATCTCCTGACATTGGTGAAGAAAAACTGTGAGCTGTGAATG
TGAATGTGAATGATGTTTGAGATTAGTTTTTACCTTGTTCTTGCTGCAGAATACAGTTGTGCAATACTAGCATTGAACGT
CATTAAAGGAAAAGAAA---------AAATAGTGACGATGGACTTGGTCAAACATGCATGGTGCTCCTGCTCCTGCAGTT
GGGAACACCCTGAGTT-GTTCAGAGTCTCTATCGCTCTCTGGTACGCAAACAAGAACCTGCCGCTACCGTGCAGGCTTTC
AAAACTGAATCTTGTACAAACAAAACAACACTCGAGTTCAGAGTCTCTCTCGCGCTAACAAAGGCACAACATGATTCCGG
TGAACATGTCATGGTTCCGATGACATCTCTCACCGTGATATGGTGGCGTTGGCCCGTATGTGTCGATCTTGTTTAACATG
TA
>chrUn_1
GCTTGTCAGTGTGCTTGTAGCCTGACCACCTCCACAAGGAGGTTACCAGCCGACATGCGTTGCATGTAACCGAACAACCT
AAATTGTGTTTTTGCCTAAACAAGCCCACAACTGAACAGCATGACTTTCACTTATTTGTAACCGGGCTAGAGGATATGCA
GGCAACCAAACAACGTGCAGATAATTATTTTTA-GACTGTATTGACTCAATTAGGCCCAACTAGTACAAATATGCAATAC
AGGCAAGCAAACACGGGCAAGTGCACATTGCGATGATTTTTTGCCACTGTGAAATACATTGCGTCCGGTGCATTTTTGTC
GTGATTTATATTGTGGTGGTTTTTTGCTCATCAGCACACTGTTTGTGAATCAAAATCAGCACACTTTTGCGGTGGCTTTA
CGCATTTCACTGCCTGGACGCGGCACGGTTGAGTGATTAGCGAGGCGGGTTGCGAACACCGTGGCGATCTCCATAAACTA
ATCGCAAAATGCGCAAATCATTCGGCCTTTTGCCTCTCGGCGAAACTGCTCCCGGCTTGCTCCGACGTAGCGCGCTGTGC
CCATGTGTAAACTGTAAAGGGCCATGTGTAAAACGCCAAGGTTAGGTCACACGCTGGCCGGCACTGC-CGCGCGCGAGCG
GTGCGCCGCCACCGCACCGGTCAGCTAGCGACAACGGCTCCAGCGGTCGGCCAACGCGCCCCACGCGCTCCGCTCCACCA
CCTACTGTACCGCACCGAAAGCCACCGCTTCCCTTCTCCTCTGCCCCGCGCACGCCTCCG-TGCGCGTACCGACGGGCGG
GCGGGCGGACAGCGCAGCGCAGCTTCCGGCCACGCCACGCGTGGGCGTGGCTCCCTACCGTCCACGGATCCGCCGTCGAT
CTGGAAGGCCGACAAACGCCGCCCCGCTTTCCGCTGCA-CCCCACGCCCACTGGATTAAGT---ACCCCCCTCACCCCGA
GACAGTCAGCTTCACTTCACT-----------------------CACTCCCACTCCCATCCCTATCACCAACCCCTCCCA
CATGGCCATGGCTCCCCACCCACCGTCCCTCCTC---CTGCTGCTCGCGCCGCTCCTCCTGTGCTCGCTGCTCCCCGACG
CGGCGCGGGCCGCCGGCGCCGAGGACACCGGGGTGACCATCGTGCGCAAGGACGGCACGACCTGCACGCTCTGCGCCTCC
TGCGGGAACCCCTGCAACCCCAACCCGGGGTACAACTACCCGTCGCCACCTCCCCCGGCTCCGGTGACCCCCGCGGCGCC
GGTGTACCCGCCTCCCACTTCCTACCCAGCTCCCTCCGGTGGAGGAGGAGGTGGCGGTGGCTACTTCTACCCTCCGCCCA
CCGGCGGGTACGGAGGAGGAGGCGGC---GGCGG---GTCCCAAGGAGGACAAGGTGGAGGAGGAGGCGGAGGCGGTGCC
TACCCGACGCCACCGCCGCCCAACCCGTTCCTGCCCTACTTCCCCTTCTACTACTACAGCCCGCCACCCCAGCTCAAGAG
CCCGGCGCCGGCCGTCTCGTCGTCCGCCGCGG---CGCCGCTGCTGCTGCTCGCGCTCTCCGGGCTCCTGCTGTGGT---
GAGGAGGACGACGGTGAGAATGCGAGGTAGATCTGCCGAGCTGACGCGCTCAGTGGATCCGTTCAACTGGCTGGCTGGCT
GGCTGGCTGCATCTGCGCTGCAGTAATTTTCGATTTTATTTATTTATTCGCCGCTGTAATTTTCTCTATTTTTTTGCTCC
TCCCTCCTCTCTGCTTCTGTGATTTATTATGTGC---CGGTATAGAACTATAATATAGGAGACCGTACCAAGTGTAAACC
AAGGACGACTAATAATAAAGCACCAGTGCTGTTTTATATAGATGGATCTG------GTGATTAAGATGTTCATGCCAAAG
GGAGGAGAGGGAGCTGTTCATCTCTCTCTTTGATTAGTTGTGGCGTTGGCAAAACGAATGTGCATCATATGGATCCGATT
A----------------------------------------------------CGATGTCATTGTTCTGATGACATCTCT
ATCTCTCACCGTGCTATGCTGGCGACAGCCCTTACGTGTGCTGGTTAAGGTTTGCGCTGTTGGATGGCAGTTCTTCTTCA
GTTCTTGGGTTGGATGTGCAGCGTAGCTTTAGAATAAGAATCTCCTGACATTGGTGAAGAGAAACTGTGAGCTGTGAATG
TGA--------GATGTTTCAGATTAGTTTTTACCTTGTTCTTGCTGCAGAATACAGTTGTGCAATACTAGCATTGAACGT
CATTGAAGGAAAAAAAAAAGAAGGGGAAATAGTGCCGATGGACTTGGTCAAACATGG----------TGCTCCTGCAGTT
ATGAACATCTGACTTCAGTTCAGAGTTTCTCTCGTTCACTGGTACAGAAACAAGAACCTGCTGCTACCGTGCAGGCTTCC
AAAACTGAATCTTGTACAAACAAAACAACACTCCAGTTCAGAGTCTCTCTCGCGCTAACGAAGGCACAACATGGATCTGG
TGAACATTTCATGGTTCCGATGACA-------------------------------------------------------
--
>chr3B_1
GCTTGTCAGTGTGTTGGTAACCTAACCACCTCCACGAGAAGGTTACCAGCCGATATGCGTTGCATGTAACCAAACAACCT
AAATTGTGTTTCTACCTAAACAAGCCCATAACCAAACAACATGACTTTCGTTTATTTGTAACTAGGCTAGAGGGTATGTA
GACAACCAAACAACGTGCAGATAATTGTTCTTA-GACTGTATTGACTGAACTAGGC------------------CAATGC
AGGCAAGCAAACACGAGCAAGTGCACATTGTGATGATTTTTTGCCACTGTGAAGCAC--TGCGTCCGGTGCATC-TTGTC
GCGATTTATATT----------TTCGCCAATCAGCACACTGTTTTCGAATCAAAAGCA----------------------
-GCATTTCACTCCCTGGACGCGGTACGGTTGAGTGATTACCGAGGCGTGTTGCGAACACCGTGGCGATCTCCCTAAACAA
ATCGCAAAATGCGCAAATCATTCGGCCTTTTGCCTCTCGGCGAAACTGCTCCCGGCTTGCTCCGACGTAGCGCGCTGTGC
CCATGTGTAAACTGTAAAGGGCCATGTGTAAAACGCCAAGGTCGCT---CGCGCTGGCCGGCACCGCGCGCGCGCGAGCG
GTGCGCCGCCACCGCACGCGTCAGCTAGCGACAACGGCTCCAGCGGTCGGCCA-----------GCGCTCCGCTCCACCA
CCTACTGTACCGCACCAAAAGCCACCGCTTCCCTTCTCCTCTGCTCCGCGCACGCCTCCCCTGCGCGTACCGA-------
-----CGGACAGCGCAGCGCAGCTTCCGGCCACGCCACGCGTGGGCGTGGCTCCCTACCGTCCACGGATCCGCCGTCGAT
CTGGAGGGCCGACAAACGCCGCCCCGCTTTCCGCTGCCGCCCCCCGCCCACTGGATTAAGT---ACTCCCCTCACCCCGA
GACAGTCAGCTTCACTCCCTCACTCGCTCGGG--------------CTCCCACTCCCATCCCCATCACCAACCCCTCCCA
CATGGCCATGGCGCCCCACCCACCGGTCCTCCTCCTGCTGCTCCTCGCGCCGCTCCTCCTCTGCTCGCTGCTCCCCGATG
CGGCGCGGGCGGCCGGCGCCGAGGACGCCGGCGTGACCATCGTGCGCAAGGACGGCACGACCTGCACGCTCTGCGCCTCC
TGCGAGAACCCCTGCAACCCCAACCCAGGATACAACTACCCGTCGCCACCTCCCCCGGCTCAGGTCACCCCCGCGGCGCC
GGTGTACCCGCCTCCCACTTCCTACCCAGCTCCCTCCGGTGGAGGCGGCGGTGGCGGTGGCTACTTCTACCCTCCGCCCA
CCGGCGGGTACGGAGGAGGAGGCGGCGGCGGCGGCGGGTCCCAGGGAGGACAAGG---TGGAGGAGGAGGAGGCGGTGCG
TACCCGACGCCCCCGCCGCCCAACCCGTTCCTGCCCTACTTCCCCTTCTACTACTACAGCCCGCCACCCCAGCTCAAGAG
CTCGGCGCCGGCCGTCCCGTCGTCCGCCGCGGCGCCGCCGCTGCTGCTGCTCGCGCTCTCCGGGCTCCTGCTCTGGTGAG
GAGGAGGACGAGGGTGAGAATGCGAGGTAGATCCGCCGAGCTGACGCGCTCAGTGGATCCATTCAGCTGG----------
---------CATCTGCGCTGCAGTAATTTTCGATTTTATTTATTTATTCACCGCTGTAATTTTCTCTATTTTTTTGCTCC
TCCCTCCTCTCTGCTTCTGTGATTTATTATGTGCTGCCGGTATAGAACT---ATATAGGAGACCGTACCAAGTGTAAACC
AAGGGCGACCAATAATAAAGCACAAGTGCTGTTTTATATAGATGGATCTGGTAGGAGTAATTAAGATGTTCATGCGAAAG
GGGGGAGAGGAAGCTGTTCATTTCTCTCTTTGATTGCTTCAGGCGTTGTCAAAACGAATGTGCATCATACGGATCCGATT
A-------------------------------------------------------------------------------
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--
>SNPs
---------------------S--------------------------------S---------------S---------
-----S-------------------S------------------------------------------------------
-----S--------S-------S----------S----S-----------------S---S-S-S---------------
-------------------------------S-------------------S----------------------------
--------------------------S-----------------------------------------------------
---------------S-----------------------------S------S---------------------------
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--------------------S---------------------------------------------S-------------
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----------------------------------------------S---------------S-------------S---
----------------------------------------------------S---------------------------
-------------------------------------------------------------SSS----------------
---------------SS----SSSSS---SSSSSSSSSSSSSSS------------------------------------
---S-S---------------------------S--S-------------------------------------------
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-----------------------------------------------------S--------------------------
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----------------------------------------S--------------------------S------------
--------------------------------S---------------------------------------------S-
-------------------------------------S----S----------S------------S-------------
--------------------S----------------------------------------S------------------
----------------S---------------------------------------------------------------
----------------------------S---------------------------------------------------
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----------------S---------------------------------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----------
---------------------------------S----------------------------------------------
---------S--------------------------------------------------S-------------------
---SSSSSSSS-------S-------------------------------------------------------------
----S--------S--------------------S---------------------SSSSSSSSSSS-------------
SS-----S-SSSSS-S----------S---S---S--S-------SS--------------S----------------S-
---------------------------------S-------------------------S-------------SS--S--
-------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_1046
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------------------------------------------------------------------ACCAACCCCTCCCA
CATAGT--------------------------------------------------------------------------
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--
>reverse_2611
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--------------------------------------------------GGCCCGTATGTGTCGATCTT----------
--
