>input_sequence_76760
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--------------------------------------------ATGGCACCATCAGCATCCACTGGTCAGAAAGTCAAC
CTGAAGGGGTACAAGACCCTACCCCATGCTATTCAGCTGGTAACGATGATGTCGGGGACGTCTTCAGCTTCAACATTGAC
GATTGGGGACC----------------AGAACAAGAAGTTCAAGGTGAGCCGTGCTTTGACGTGGATGGTGGTTATCTGC
ATACCGGCTACTTTCATTGCCGTCACAGCAGGTTCGGCCTACAGGATGTATAACAAACCCATCTGGGCCGCCGGCTTCCC
ATCGAGGCTGCCAGTTGTCTTGATGTTGGGAGCTTACCTGGCAGTGGTGAACCTGGCGCTGGGGTACTTGACCCTCTACT
TGCCACAGGCACCCTTCGCTGTGTGGAAAGCTCTGGATGATGTTGGTCTCAGGTTGATTGGCCTTGCCGTTATCTTAATC
TCTGGCCCTGTTTTGTTGTCTGCCCAGGCGTGGCTGCACATCATCTGGGCTTGCCTTCTTGGCGTCCTCATTGCTGCCAT
CCTTGCCTTCTGTGTCTGTCTTGCTCGGACGTACAGCAAGTAG-------------------------------------
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>chr3A_1_TraesCS3A01G329500
CGATAAACACGGGAATTTCACGGATTTGCTAGTGCAAAACAGAGGATTGCTGGTCACAGGAAAACTGCAAGATGATTGGA
AAACAA---AGGCTCTGTTCTTATTCCTAAAAAGAGGTTGGAGTGTTTGGTCAAATTCCTGTGGAATTGAGGCATATGAA
TCCAATCCATATGAATTTAGATAGCACCTGCCCTTTGAAGCAGAGTTAAACCATAGGGAAAAGTAAAGGATTGGAATCCC
ACAGAAATCCTATGAAATTCCTACAATCGCGCAGGGGTGAGCTGTAGACGTTTTAGTTGGGTGGAGGCCGCCGGGGAGGT
GGGTATGTTGTTGAAGTATATGAAGGGGCTAACTCACCTAATAATTAAGAAATGCATATGGCTGAGTCTGCTGCTGCCGT
GGCTGATGCTCTGGCCACTCTGACAATGTAAGCTGCCGTGGTCTGTTGTATGTACCTGATTTCGTTCCGTCTAGTTTAGT
TCAGATCATGACTGACCCTCCCACATTAAAAGCTTACTTTGGTTATATTCATGGTTGATATGTTCAGAATGGTACTGGTT
TCAGGCTTTTCATGAAAACCACTTGAACTGAGAACAAGTTGCAATCTATTGGATCACACAGTTTTGGGCTTAATCTGATA
CTCTGCGGGAACCATGTGGTCCTTACTGTCTTGACGAGGGCTAAGCTAATGCTATCTGATACACTATAGCTGGCTTCATT
TTAATAGGACCAGCTATTTCTCTTATATTTTGTGGTTGGGCGTGAACCTGCAGAGAATTTGTAGAATTATGTATACTCAG
TCCTAGTATTATTGTTTGGTGATGGATCGCTCCTTTTAGAGAAGTGTAGAGATAATTTACAGTTTTTGTATCAATAAGAT
TCCATGTATATACAATATTTCTATATGTCAGAACTATGT-GTTTTTTTTCAGGATACACTACAGCATACTTTGAAGAGTT
GTCCTGTGCCAAATCAAGAAAGAAGGCACCTTTTGCCTGGAATCATGGCACCATCAGCATCCACTGGTCAGAAAGTCAAC
CTGAAGGGGTACAAGACCCTACCCCATGCTATTCAGCTGGTAACGATGATGTCGGGGACGTCTTCAGCTTCAACATTGAC
GATTGGGGACC----------------AGAACAAGAAGTTCAAGGTGAGCCGTGCTTTGACGTGGATGGTGGTTATCTGC
ATACCGGCTACTTTCATTGCCGTCACAGCAGGTTCGGCCTACAGGATGTATAACAAACCCATCTGGGCCGCCGGCTTCCC
ATCGAGGCTGCCAGTTGTCTTGATGTTGGGAGCTTACCTGGCAGTGGTGAACCTGGCGCTGGGGTACTTGACCCTCTACT
TGCCACAGGCACCCTTCGCTGTGTGGAAAGCTCTGGATGATGTTGGTCTCAGGTTGATTGGCCTTGCCGTTATCTTAATC
TCTGGCCCTGTTTTGTTGTCTGCCCAGGCGTGGCTGCACATCATCTGGGCTTGCCTTCTTGGCGTCCTCATTGCTGCCAT
CCTTGCCTTCTGTGTCTGTCTTGCTCGGACGTACAGCAAGTAGCCTCTTGCTACCATGGCTTAGATGCCGCCTTTTAGGC
CCGTACGTGCAGTACGGGCCTGTCCTCGTAAACTAGCTAGCGGCTTAGATGCCGCCTTAGACCCGTACGGGCAGTAGCGG
CTTAGATGCCTTCTTAGACCCGTATATGGGGCAGTACGGGTCTGTCTTTGTGAACTATACTAGCTGTCGTTTGCTAGTAG
GATAATAATGTCGTCTCTTCAAGGTGAAGTCACTCTGTAAACAGTCTGCTGCTCGTGTGTTATTAATTATTATTATTATT
GTCTTTTTTGTTACCTTTAGCAAAAAAA------ACTGTGTGCAATTGTGACTCTGTTTAAAAGTAAAGAC-TTTTTGCC
AGTACAGGTTACATTTAGAATTTTGAAACAGAGGGCCCAGTGCCATTATGACAAAACGTCCGCTGTCGTGTTCATTTGTC
ATAGTGGGAAGTAGTCTATACTA--AGCGTCAGCGCGCTTCGCTGCGCCGCTCCACGAGGGTCCAACATTGCATGTTCTT
TTTTTGAACATTTTGAGGCCTTTTTTACTACTGTACATGATTAGTTCCAAGTTACAGCTGGAACGAAGCATAGATAATCA
GGTGCAAGTTACAGCTCATGGTCGTGGAACTACAATATACGGAGAAAAAAATGCAGCAAATTT-AGGAGTAAAATCCACT
TGCGGTATGACAATATACATTTTATCCTGCTACTCCAATATCAAATGAGTATTTCTGAGAAGTTGAC-------------
---------GTAAAATCGGTGCAATTTAAAGTAAAATTCAGACTGTACAATATCAAGAAGATCGTTGCCTTCATTTGGCC
CAGGAAAGGTTTGAGA----AGATTCGGTCAAGTCTACAATCAAAAGAGGAGAAAAATTGACGAAGACCTTACTTCCTCA
ATCTCTTGCACCAAGCACTAATCCTAGATTGTCGCCTACCCCTAACATCAACAGAATTGTTACAAACATAGGTCACAAAA
ATTGTCTTGTCCATATTTCAAATTCATCTCTTTAGCAAC
>chr3A_1
CGATAAACACGGGAATTTCACGGATTTGCTAGTGCAAAACAGAGGATTGCTGGTCACAGGAAAACTGCAAGATGATTGGA
AAACAA---AGGCTCTGTTCTTATTCCTAAAAAGAGGTTGGAGTGTTTGGTCAAATTCCTGTGGAATTGAGGCATAGGAA
TCCAATCCATATGAATTTAGATAGCACCTGCCCTTTGAAGCAGAGTTAAACCATAGGGAAAAGTAAAGGATTGGAATCCC
ACAGAAATCCTATGAAATTCCTACAATCGCGCAGGGGTGAGCTGTAGACGTTTTAGTTGGGTGGAGGCCGCCGGGGAGGT
GGGTATGTTGTTGAAGTATATGAAGGGGCTAACTCACCTAATAATTAAGAAATGCATATGGCTGAGTCTGCTGCTGCCGT
GGCTGATGCTCTGGCCACTCTGACAATGTAAGCTGCCGTGGTCTGTTGTATGTACCTGATTTCGTTCCGTCTAGTTTAGT
TCAGATCATGACTGACCCTCCCACATTAAAAGCTTACTTTGGTTATATTCATGGTTGATATGTTCAGAATGGTACTGGTT
TCAGGCTTTTCATGAAAACCACTTGAACTGAGAACAAGTTGCAATCTATTGGATCACACAGTTTTGGGCTTAATCTGATA
CTCTGCGGGAACCATGTGGTCCATACTGTGTTGACGAGGGCTAAGCTAATGCTATCTGATACACTATAGCTGGCTTCATT
TTAATAGGACCAGCTATTTCTCTTATATTTTGTGGTTGGGCGTGAACCTGCAGAGAATTTGTAGAATTATGTATACTCAG
TCCTAGTATTATTGTTTGGTGATGGATCGCTCCTTTTAGAGAAGTGTAGAGATAATTTACAGTTTTTGCATCAATAAGAT
TCCATGTATATACAATATTTCTATATGTCAGAACTATGT-TTTTTTTTTCAGGATACACTACAGCATACTTTGAAGAGTT
GTCCTGTGCCAAATCAAGAAAGAAGGCACCTTTTGCCTGGAATCATGGCACCATCAGCATCCACTGGTCAGAAAGTCAAC
CTGAAGGGGTACAAGACCCTACCCCATGCTATTCAGCTGGTAACGATGATGTCGGGGACGTCTTCAGCTTCAACATTGAC
GATTGGGGACC----------------AGAACAAGAAGTTCAAGGTGAGCCGTGCTTTGACGTGGATGGTGGTTATCTGC
ATACCGGCTACTTTCATTGCCATCACAGCAGGTTCGGCCTACAGGATGTATAACAAACCCATCTGGGCCGCCGGCTTCCC
ATCGAGGCTGCCAGTTGTCTTGATGTTGGGAGCTTACCTGGCAGTGGTGAACCTGGCGCTGGGGTACTTGACCCTCTACT
TGCCACAGGCACCCTTCGCTGTGTGGAAAGCTCTGGATGATGTTGGTCTCAGGTTGATTGGCCTTGCCGTTATCTTAATC
TCTGGCCCTGTTTTGTTGTCTGCCCAGGCGTGGCTGCACATCATCTGGGCTTGCCTTCTTGGCGTCCTCATTGCTGCCAT
CCTTGCCTTCTGTGTCTGTCTTGCTCGGACGTACAGCAAGTAGCCTCTTGCTACCATGGCTTAGATGCCGCCTTTTAGGC
CCGTACGTGCAGTACGGGCCTGTCCTCGTAAACTAGCTAGCGGCTTAGATGCCGCCTTAGACCCGTACGGGCAGTAGCGG
CTTAGATGCCTTCTTAGACCCGTATATGGGGCAGTACGGGTCTGTCTTTGTGAACTATACTAGCTGTCGTTTGCTAGTAG
GATAATAATGTCGTCTCTTCAAGGTGAAGTCACTCTGTAAACAGTCTGCTGCTCGTGTGTTATTAATTATTATTATTATT
GTCTTTTTTGTTACCTTTAGCAAAAAAA------ACTGTGTGCAATTGTGACTCTGTTTAAAAGTAAAGAC-TTTTTGCC
AGTTTAGGTTACATTTAGAATTTTGAAACAGAGGGCCCAGTGCCATTATGACAAAACGTCCGCTGTCGTGTTCATTTGTC
ATAGTGGGAAGTAGTCTATACTA--AGCGTCAGCGCGCTTCGCTGCGCCGCTCCGCGAGGGTCCAACATTGCATGTTCTT
TTTTTGAACATTTTGAGGCCTTTTTTATTACTGTATATGATTAGTTCCAAGTTACAGCTGGAACGAAGC-----------
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>chr3D_2
-GATAAACACGGG-ATTTCACGGGTTTGCTAGTGCAAAACAGAGGATTGCTGGTCACAGGAAAACTGCAAGATGATTGGA
AAAAAAAAGAGGCTCTGTTCTTATTCCTAAAAAGAGGTTGGAGTGTTTGGTCAAATTCCTGTGGAATTGAGGCATAGGAA
TCCAATCCATATGAATTTAGATAGCACCTGCCCTTTGAAGCAGAGTTAAACCATAGGGAAAAGTAAAGGATTGGAATCCC
ACAGAAATCCTATGAAATTCCTACAATCGCGCAGGGGTGAGCTGTAGACGTTTTAGTTGGGTGGAGGCCGCCGGGAAGGT
GGGTATGTTGTTGAAGTATATGACGGGGCTAACTCACCTAATAATTAAGAAATGCATATAGCTGAGTCTGCTGCTGCCGT
GGCTGATGCTCTGGCCACTCTGACAATGTAAGCTGCCGTGGTCTGTTGTATGTACCTGATTTCGTTCCGTCTAGTTTAGT
TCAGATCATGACTGACCCTCCCACATTAAAAGCTTACTTTGGTTATATTCATGGTTGATATGTTCAGAATGGTACTGGTT
TCAGGCTTTTCATGAAAACCACTTGAACTGAGAACAAGTTGCAATCTATTGGATCACACAGTTTTGGGCTTAACTTGATA
CTCTGCGGGAACCATGTGGTCCATACTGTGTTGACGAGGGCTAAGCTAATGCTATCTGATACACTATAGCTGGCTTCATT
TTAATAGGACCAGCTATTTCTCTTATATTTTGTGGTTGGGCGTGAACCTGCAGAGAATTTGTAGAATTATGTATACTTAG
TCCTAGTATTATTGTTCGGTGATGGATCGCTCCTTTTAGAGAACCATAGAGATAATTTACAGTTTTTGTATCAATAAGAT
TCCATGTATGTACAATATTTCTATATGTCAAAACTATGT-TTTCTTTTTCAGGATACACTACAGCATACTTTGAAGAGTT
GTCCTGTGCCAAATCAAGAAAGAAGGCACCTTTTGCCTGGAATCATGGCACCATCAGCATCCACTGGTCAGAAAGTCAAC
CTGAAGGGGTACAAGACCCTACCCCATGCTATTCAGCTGGTAACGATGATGTCGGGGACGTCTTCAGCTTCAACATTGAC
GATTGGGGACC----------------AGAACAAGAAGTTCAAGGTGAGCCGTGCTTTGACGTGGATGGTGGTTATCTGC
ATACCGGCTACTTTCATTGCCATCACAGCAGGTTCGGCCTACAGGATGTATAACAAACCCATCTGGGCCGCCGGCTTCCC
ATCGAGGCTGCCAGTTGTCTTGATGTTGGGAGCCTACCTGGCAGTGGTGAACCTGGCGCTGGGGTACTTGACCCTCTACT
TGCCACAGGCACCCTTCGCTGTGTGGAAAGCTCTGGATGATGTTGGTCTCAGGTTGATTGGCCTTGCTGTTATCTTAATC
TCTGGCCCTGTTTTGTTGTCTGCCCAGGCGTGGCTGCACATCATCTGGGCTTGCCTTCTTGCCGTCCTCATTGCTGCCAT
CCTTGCCTTCTGTGTCTGTCTTGCTCGGACGTACCGCAAGTAGCCTCTTGCTACCATGGCTTAGATGCCGCCTTTTAGGC
CCGTACGCGCAGTACGGGCCTGTCCTCGTAAACTAGCTAGCGGCTTAGATGCCGCCTTAGACCCGTACGGGCAGTAGCGG
CTTAGATGCCTTCTTAGACCCGTATATGGGGCAGTACGGGTCTGTCTTTGTGAACTATACTAGCTGTCGTTTGCTAGTAG
GATAATAATGTCGTCTCTTCAAGGTGAAGTCGCTCTGTAAACAGTCTGCTGCTCTTGTGTTATAT-TAATTATTATTATT
GTCTTTTTTGTTACCTTTAGCAAAAAAAAAAAAAACTGTGTGCAATTGTGACTCTGTTTAAAAGTAA-GACGTTTTTGCC
AGTTCAAGTTACATTTAGAATTTTGAAACAGAGGGCCCAGTGCCATTACGACAAAACGTCCGCTGTTGTGTTCATTTGTC
ATAGTGGGAAGTAGTCTATACTAGAAGTGTCAGCG-----CGCTTCGCCGCTCCGCGAGGGTCCAACATTGCATGTTCTT
TTTTTGAACATTTTGAGGCCTTTTTTAC-----TATATGATTAGTTCCAAGTTACAGCTGGAACGAAGCATAGATAATCA
GGTGCAAGTTACAGCTCATGGTCGTGGAACTACAATATACGGAGAAAAAAATGCAGCAAATTT-AGGAGTAAAATCCACT
TGCGGTATGACAATATACATTTTATCCTGCTACTCCAATATCAAATGAGTATTTCTGAGAAGTTGAC-------------
---------GTAAAATCGGTGCAATTTAAAGTAAAATTCAGACTGTACAATATCAAGAAGATCGTTGCCTTCATTTGGCC
CAGGAAAGGTTTGAGAACAAAGATTCGGTCAAGTCTACAATCAAAAGAGGAGAAAAATTGACGAAGACCTTACTTCCTCA
ATCTCTTGCACCAAGCACTAATCCTAGATTGTCGCCTACCCCTAACATCAACAGAATAGTTACAAACATAGGTCACAAAA
ATTGTCTTGTCCATATTTCAAATTCATCTCTTTAGCAAC
>chr3B_258
CTC-----------------------------------------------------------------------------
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-----------------------CAATCGCGCAGGGGTGAGCTGTAGACGTTTTAGTTCGGTGGAGGCCGCCGGGGAGGT
GGGTATGTTGTTGAAGTATATGCCGGGGCTAACTCACCTAATAATTAAGAAATGCATATAGCTGAGTCTGCTGCTGCCGT
GGCTGATGCTCTGGCCACTCTGACAATGTAAGCTGCCGTGGTCTGTTGTATGTACCTGATTCCGTTCCGTCTAGTTTAGT
TCAGATTACGACTGACCCTCCCACATTAAAAGCTTACTTTGGTTATATTCATGGTTGATATGTTCAGAGTGGTACTGGTT
TCAGGCTTTTCATGTAAACCACTTGAACTGAGAACAAGTTGCAATCTATTGGATCACACAGTTTTGGGCTTAATTTGATA
CTCTGCGGGAGCCATGTGGTCCATACTGTGTTGACGAGGGCTAAGCTAATGCTATCTGATACACTATAGCTGGCTTCATT
TTAATAGGACCAGCTATTTCTCTTATATTTTGTGGTTGGGCGTGAACCTGCAGAGAATTTGTAGAATTATGTATACTCAG
TCCTATTATTATTGTTTGGTGATGGATCGCTCCTTTTAGAGAAGTGTAGAGATAATTTGCAGTTTTTGTATCAATAAGAT
TCCATGCATATACAATATTTCTATATGTCAAAACTATGTCTTTTTTTTTCAGGATACACTACAGCATACTTTGAAGAGTT
GTCCTGTGCCAAATCAAGAAAGAAGGCACCTTTTGCCCGGAATCATGGCACCATCAGCATCCACTGGTCAGAAAGTCAAC
CTGAAGGGGTACAAGACCCTACCCCATGCTATTCAGCTGATAACGATGATGTCGGGGACGTCTTCAGCTTCAACATTGAC
GATTGGGGACC----------------GGAACAAGAAGTTCAGGGTGAGCCGTGGTTTGACGTGGATGGTGGTTATCTGC
ATACCGGCTACTTTCATTGCCATCACAGCAGGTTCGGCCTACAGGATGTATAACAAACCCATCTGGGCCGCCGGCTTCCC
ATCAAGGCTGCCAGCTGTCTTGATGTTGGGAGCTTACCTGGCAGTGGTGAACCTGGCGCTGGGGTACTTGACCCTCTACT
TGCCACAGGCGCCCTTCGCTGTGTGGAAAGCTCTGGATGATGTTGTTCTCAGGTTGATTGGCCTTGCCGCTATCTTAATC
TCTGGCCCTGTTTTGTTGTCTGCCCAGGCGTGGCTGCACATCATCTGGGCTTGCCTTCTTGGCGTCCTCATTGCTGCCAT
CCTTGCCTTCTGTGTCTGTCTTGCTCGGACGTACAGCAAGTAGCCTCTTGCTACCATGGCTTAGATGCCGTCTTTTAGGC
CCGTACGCGCAGTACGGGTCTGTCCTCGTAAACTAGCTAGCGGCTTAGATGCCGCCTTAGACCCGTACGGGCAATAGCGG
CTTAGATGCCTTCTTAGACCCGTATATGGGGCAGTACGGGTCTGTCTTT-------------------------------
------------------TCAAGGTGAAGTCACTCTGTAAACAGTCTGCTGCTCTTGTGTT----ATAATTATCATTATT
GTCTTTTTTGTTACCTTTCGCAAAAA----AAAAACTATGTGCAATTGTGACTCTGTTTAAAAGTAA-GAC-GTTTTGCC
AGTTCAAGTTACATTTAGAATTTTGAAACAGAGGGCCCAGTGCCATTACGACAAAACGTCCGCTGTCGTGTTCATTTGTC
ATAGTGGGAAGTAGTTTATACTAGAAGCGTCAGCGCGCTTCGCTACGCCGCTCCGCGAGGGTCCAATGTTGCATGTTCTT
TTTTTGAACATTTTGAGGCCTTTTTTA------TATATGATTAGTTCCAAGTTACAGCTGGAACGAAGCATAGATAATCA
GGTGCAAGTTACAGCTCATGGTTGTGGAACTACAATATACGGAGAAAAAAATGCAGCAAATTTTAGGAGTAAAATCCACT
TGTCGTATGACAATATACATTTTATCCTGCTACTCCAATATCAATTGAGTATTTCTGAGAAGTTGATGTAAAATTTCTGA
GAAGTTGATGTAAAATCGGTACAATTTAAAGTAAAATTCAGACTGTACAATATCAAGAAGATCGTTGCCTTCATTTGGCC
CAGGAAAGGTTTGGGAACAAGGATTCGGTCAAGTCTACAATCAAAAGAGGAGAAAAATTGACGAAGACCTTACTTCCTCA
ATCTCTTGCACCAAACACTAATCCTAGGTTGTCGCCTACCCCTAACATCAACATAATTGTTACAAACATGGGTCACAAAA
ATTGTCTTGTCCATATTTCAAATTCATCTCTTTAGCAAC
>chr3D_1024
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-------------------------------------------------------------------TCAGATAGTCAAC
CCGAAGGGAGACAGGACCGTACCCCGTGCTATTCAGTTGGTAATGAAGATGTCGGGGACGTCTTCAG------CAATGAC
GGTAGGGGAGTGGAACGGTAGGGGAGTGGAACAAGAAGTTCAGGGTGAGCCGTGTTGTGACGTGGATACTGGTTGTTTGG
ATATCATCCCTTTTCACTGCGACCACGGCAGGTTGGTCCTATAGCATGTATAACAAACCCATCTGGGCCGCCGGCTTCCC
ATGGTGGTTGCCGGTGGTCATCTTGTTGGGCGCCTACATGACAGTGGTGTACCTGGCGATGGGCTACTTGACCCTCTTCT
TGCCGCAGGCACCATTCGCGGTGTGGAGAGCTCTTGATGATGTTGGTTTCAGGGAGATTGGCTTTGCCGCCATCTTAACC
TCTATCCCTGTTTTGTTGCTGGACCAGGCGTGGCTACACATCACCTTTGCTTGTCTTCTTGCCATCCTCATTGCAGCCGT
CCTTGCCTTGTGTGTGTGTCTTGATCGGACGTATGGCCAGTAGCCTCTTGCTAC--------------------------
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>SNPs
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----------------------S------S--------------------------------------------------
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---------------------S----------------------------------------------------------
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---S----------------------------------------------------------------------------
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-----------------------------------S--------------------------------------------
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>forward_157
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-------------------------------------------------------TTCCTGTGGAATTGAGGCATAT---
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>reverse_2055
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------------------------------------------------------ACGAGGGTCCAACATTGCAT------
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