>input_sequence_76758
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATGGAGCCGACAGAGACCGCCTTCCTCG
TCGCCGGAGACACGCCGCCGAAGAAGACGGTGCAGCTGGGCCAAGGTGAGGGCTCTGCGAAGCCCGGGTGCGGACGGGCG
TTCTGGGCGATCCTCTCGCTCGTCACCGGCAACTTAGCGTGGGGGTTGTACCGCGCGCGCCACAGCAGCGCGCATGACCT
CGCCTTCGTGATCATGGCCTACTACCCCACCTACTTCTGCCTCTGGGGGCTCTACGTCTGCACCAGGAGGCGCGAGCTCT
TGCGCCGCGACGACGACCCGGCGGCGGCGCCCGAGAGGCGGCGTGCCAGGTTCAGAGTGTGGGCGGCCTCACTGGCGGTG
GGCGCCATGATCGTGCTGCAGCTCGCGGGTGACACCCCGGACCTGCCGCCCAAGTTCGCCTTGACCGTGATCGGCTGTCT
CGCCATGGCACTCGCCTGGTGCTGCATATACGCCGGCTACAGAGCCCGTGCGGACGCCGCTGGAAGCTGGCCGGAGAAGG
ATCTTCACGAGGTGTCACCGGAGCACAGGGTTTGA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr3A_1_TraesCS3A01G113400
GTCATGGGGTACTCCGAGGTCGAGCGGCAAAGCATTGCTGGCCGACTCGATTGTCGGATGGGGATTACCTATCTCTTAGT
CCTTCTGTTCCCAAATTGGTGGCATATAAATTCAGCCAAAAAATCAATCTCTTTAAGTTTGACCAAATATATAGTAGAAA
ATATCAACAACTACAATACTGCATACATAGGTTATGAAAATATATCTAATGATGAATATAATGATATTGATTTGATATTG
TTTATTTTCATATAGACTTGGTGAAAATTAAAAACATTGACTTTTCTTTATAGAATTTATACACCAACTATTGAGGGGCG
GAGGTAGTGTCTGGCAATCCCTATTAGCGAGTCTAGCCTCTCTATTACCGATCTGCGTCCAATTGTGATCAAAATCTAAC
AAAGAGTCAAGCCTTGGCAGGCAGGTGACTCTTCAAGGCGGCAAGAACAGTGTTGATTTACCCATTCATGTCGAGTCTTC
TCATGTTTATTATAGGTTTCTATAACTTTTATGAAACCCTACACCACGAGATTGCAAAGTTTCAATCTAATCTTTTCTGG
GCTGACAATAGATGGACAGACATTTGCAAGCCTAAGAAAGAAATACAGTAAATTCCTTTAGAGGAACAATAAATTTCTAA
TCATAAAAATCATCTTCAGACTAAGTGAGTTGAATTATTCAGAAACTATTTTTTAGTTATCACCTGGCTATCCCATGACC
AAATCTGAGGAGAATTATTATTCAGACGCGCTTGCCGATTTGCCTCAACCGTGGACAGAGTCGCCCCTCAAAAAAAGAAA
AAAAACCATGGACAGAGTCGCTGTCCGGCTGCTCCGTCTCACCATGACCATATATGAAGGCCAGCGCTGCTCGCGACAGA
GAAACACCCTCGCAGCACCGACACCTGCAT-----CGCAACCCGTCCACTCGCGCAGTTACGCCGGCCGGCATCAGGTGC
A-------CCCTTTAAGCTCACGACGACCTTGCTCGGCGGCCAGTGGCGTCGATGGAGCCGACAGAGACCGCCTTCCTCG
TCGCCGGAGACACGCCGCCGAAGAAGACGGTGCAGCTGGGCCAAGGTGAGGGCTCTGCGAAGCCCGGGTGCGGACGGGCG
TTCTGGGCGATCCTCTCGCTCGTCACCGGCAACTTAGCGTGGGGGTTGTACCGCGCGCGCCACAGCAGCGCGCATGACCT
CGCCTTCGTGATCATGGCCTACTACCCCACCTACTTCTGCCTCTGGGGGCTCTACGTCTGCACCAGGAGGCGCGAGCTCT
TGCGCCGCGACGACGACCCGGCGGCGGCGCCCGAGAGGCGGCGTGCCAGGTTCAGAGTGTGGGCGGCCTCACTGGCGGTG
GGCGCCATGATCGTGCTGCAGCTCGCGGGTGACACCCCGGACCTGCCGCCCAAGTTCGCCTTGACCGTGATCGGCTGTCT
CGCCATGGCACTCGCCTGGTGCTGCATATACGCCGGCTACAGAGCCCGTGCGGACGCCGCTGGAAGCTGGCCGGAGAAGG
ATCTTCACGAGGTGTCACCGGAGCACAGGGTTTGAGCTTTGAAGCTTTGAACT------GTACATACGTGGAAGCAGCAG
GTTGTTTATATTCTTGT------TAATCTTGTAACCTTTGTCTCCTGATACTTTTTTTTAAACTGGTATCTTGAAACTTT
ATTGGTGAACTGTTCCGTCGGCGTCTGTCTATAAACCATACTACCTCTGTATTATAATGTTTTACTTCATCTGTCATCTG
TCCTAAAATATTAGTCACTCAACTTTATACTAACTTTGTACTAAAGCTAATATAAAGTTGAGTCACTTATTTTGGGATGA
AGGAAGTATAATATAAGATGTTTTTTTGACATTTTAAGAAACATCTTATATTATAGTAATACAGAGGGAGTAACTAGTTG
TATGTGTCTATTCTGTAAAGTTTGGCTGATGATTATATTTTTGAGATTTTTTACATCTTTCCGCTGTTGTTTTTTCGTCT
CATTTCTTCAACTCTTTCCACCATCGCACAATAATACAGGAACACCCGAATGCCAACAATGT---AATCCAACACGACAC
GCAAAAACATCTTGTCGTCAAAATGCGCTTCTTTTCTCCTATGTGTTTCATAAGCAAAAGTAAAAAAACAAAACAAGGAA
ACCAAAACCATGTATCAAAATTCTTCAACAACTGTCACGCCATGAAGAACAAGACGGTGAGGGGGATGGGGGCGACCATC
CCTGTTCTGACCATAGAACCAGAGAGGCCTTACCTTAGTAGCTTCTTGACAAAGTCGAAGCTGACCGTGCATCGTCAAAC
AGAGAAGCCATCTTCCCCTAATAATAACTAGCAAAAGAGTTCGTGCGTTGTAACGAGAGAAAAAACATAACACACGCTCT
TAACTCAACAATCATCACTCAAGACCACAATAGGTCCATCTCCTTTATTTTTGCGAGGCATCATATTTGTGTTGCCGCTT
ATCCTCCTTCTCATTCTCGCCGGTGATGGCATCAGTGTTCACATAAAACAACAAAAAACGTGTGTTGAATATGGTTAATC
CTAAGACGTC
>chr3B_707
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCTATCCCATGACC
AAATCTGAGGAGAAATACTATTCAGACGCGCTTGCCGATTTGCCTCGACCATGGACC-----------------------
--------------GAGTCGCTGCCCAGCTGCTCCGTCTCACCATGACCATATATG-------ACGCTGCTCGCGCCAGA
GAAACACCCTCGCAGCGCCGAAACCTGCAGCATAGCGTAACCCGTCCACG--------TACGCCGGCCGGCATCAGGCAT
CAGCCGCGCCCTTTAAGCTCACGACGACCTTGCCCGGCGGCCAGTGGCGCCCATGGAGCCCACAGAGACCGCCTTCCTCG
TCGCGGGAGACACGCCGCCGCCGAAGACGGTGCAGCTGGGCCAAGGTGAGGGGTCGGAGCAGCCCCGGTGCGGATGGGCG
TTCTGGGCAATCCTCTGGGTCGTCACCGGCAACTTAGCGTGGGGGTTGTACCGCGCGCGCCACAGCAGCGCGCACGACCT
CGCGTTCGTGATCATGGCATACTACCCCACCTACTTCTGCCTCTGGGGGCTCTACGTCTGCATCAGGAGGCACGAGCTCC
TGCGCCGCGACGACGACCCGGCGGCGGCGCCCGAGCAGCGGCGGGCCAGGTTCAGAGTGTGGGCGACCTCGCTGGCGGTG
GGCAGCATGATCGTGCTGCAGATCGCGGGTGACACCCCGGACCTGGCGCCCAAGTTCGCCTTGACCGTGCTCGGCTGTCT
CGCCATGGCACTCGCCTGGTGCTGCATATACGCCGGCCACAGAGCCCGTGCGGACGCCG---GAAGCTGGCCGGAGAAGG
ATCTCCACGAGGTGTCCCCGGAGCACCGGGTTTGAGCTTTCAAGCTTTAATTTGAACTGGTACATACGTGGAGGCAGCCT
-TTGTTTATATTCTTATACTGTATAATCTTGTAACCTTTGTATC--------------------------TTGAAACTTT
ATTGGTGAACTGTTTCGTCGGCGTCTGTCT----ACCATACTACCTCTGTATTACTA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TAATACAGAGGGAGTAACTAATTG
TTTGTGTCAAATCTGTAAAGTCTGGCTG--------------------------ATCTTTCCGCTGTTGATTTTTCGTTT
CATTTCGCCAACTCTTTCCACCGTCGCA--ATAATACAGTGACACCACCGTGTGGCAACAACGTAAATCCAACACGACAC
GCAAAAACATCTTGTCATCAAAACGTGTTTCTTTTC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr3D_739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TATTCAGACGCGCTTGCCGATTTGCCTCGACCGTGGACC-----------------------
--------------GAGTCGCTGCCCAGCTGCTCCGTCTCACCATGGCCATATATGAAGGCCAACGCTGCTCGTGCCAGA
GAAACACCCTCGCGGCGCCGACACCTGCAGCATAGCGTAACCCGTCCACG--------TACGCCGGCCGGCATCAGCTGC
A-------CCCTTTAAGCTCACGACGACCTTGCCCGGCGGCCAGTGGCGTCCATGGAGCCCACAGAGACCTCCTTCCTGG
TCGCGGCAGACACGCCGCCGCCGAAGACGGTGCAGCTGGGCCAAGGCGAGGGCTCGGCGCGGCCCGGGTGCGGATGGGCG
TTCTGGGCGATCCTCTCGCTCGTCACCGGCAACTTAGCGCGGGGGTTGTACCGCGCGCGCCACAGCAGCGCGCACGACCT
AGCGTTCGTGATCATGGCATACTGCCCCACCTACTTCTGACTCTGGGGGCTCTACGTTTGCATCAGGAGGCACGAGCTCC
TGCGCCGCGACGACGACCCGGCGGCGGCGCCCGAGCAGCGGCGGGCCAGGCTCAGAGTGTGGGCGGCCTCGCTGGCGGTG
GGCGGCATGATCGTGCTGCAGCTCGCCGGTGACACCCCGGACCTGGCGCCCAAGTTCGCCTTGACCGCGCTCGGCTGTCT
CGCCATGGCACTCGCCTGGTGCTGCATATACGCCGGCCACAGAGCCCGTGCCGACGCCG---GAAGCTGGCCGGAGAAGG
ATCTCCACGAGGTGTCCCCGGAGCACCGGGTTTGAGCTTTCAAGCTTTAATTTGAACTGGTACATACGTGGAGGCAGCCT
-TTGTTTATATTCTTAT------TAATCTTGTAACCTTTGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
--------------S--S----------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------S--S------------------------------------S-----------S----
----------------S------------S-------S-----------SSSSSSSSS----------------------
---------------------------------S-----------------S--------S-------------------
----S---------------SS---------------------------------S---S--------------S-----
--------------------------------------------------------------------------S-----
---S--------------S-------------------------------------------S--------S-------S
-----------------------------------SS------S--------------------------S---------
----S----------------------------------------S-----------------------S----------
-------------------------------------S---------------------SSS------------------
----S-----------S---------S-------------S-------S-SS--------------------S-----SS
S--------------S-------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSS----------
--------------S---------------SSSS--------------------SS-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S---
-S------S-S----------S------SSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--------S-
------SS--------------S-----SS---------SS-----SSSS--SSSSS-SSSS------------------
----------------S------S-S-S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_793
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GACAGAGTCGCCCCTCAAAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_2489
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTCATTCTCGCCGGTGATG----------------------------------------------------
----------
