>input_sequence_76757
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-----------------------------------------------------------------------ATGGTCAGT
GTTTCAACATTTGTAGCTATGTTTCTCGCCGTGCTCGCCATCGTTTCCTCTAGCCTCCTTGTTGCCCATGCTGACACTGA
TTTCATCTCCTGCACATGTAACAAGACCAACAACACCGCATTGTGCATAGCCGTGATTACCGTCAAGCCACAAAGCTCCC
ATGCCTCCACTGAGCATGACCTCGCCAGTATTGCGTTGAATATCGCCACTAACACCGCCAAACACAATGTCGAGGTCATC
AGTGACCTATCCAAGAACAACCAGAGCACACCGGAGGGGTTTGCAATTGCCATCTGCCTCAAGGCTTACACTGAAGCCAC
TAGTGCCCTGGAGATTTTTGCCGACTTATACTTCGAAAGAGGGTTGTACCCTTCTACATTGAACGTTGTTTCATTTGCAA
TGGGTGCTAGTGACACATGCAAGGAAGCGTTCAAATGGATCAAGAAGAAGTCCCCCGTGTCCTACATAGATCGTGAGATG
ACGGAGCATTGTAGTGTCGTCAGCAACCTCATAAACCTACTTGTCCCCAAGTGA--------------------------
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>chr3A_1_TraesCS3A01G054300
GAAAAAAAGGTGATAACAGAGGCGCGCACAAAATGAGCCACTTGCAACGCGATTTTAGATTCAAATCAATTTTTCTGCTA
TACAATATAAATGATATCTATATCTACATTTGTCAATTGCTAGGTGGTGGCCCAGTGGCTAGTGCCATACGCGTGCAAGG
GGAAGTCTTATGTTAAAATCATGTAAGCATTA--TTGTTTATTGTGTTTCTATTTCATTCTTCGTCACTGACAAGTGGGA
CCCACATGCATGCATGAAGCGTGGGGCAACTAGCTGCAGAGTTAAGGGAAATGTACTCAAATGTACCCATAAAAAAGTTG
TGGGGCTGATTTGTGTCATTTTTGAAGTTTATGTTTGAATCTATACATCTAATGCAAGTTTATGTACTAAAAATGTAATT
AACTCTTTATTTGTTCATTTGCAAAACTGGTTGTACGTTGATTCAGTAGATGAATTCACGGGAGTTAGAGCACTCATTTG
ATCATTCATTCATTCATTTATTTGGTTTGCTGTTACAGTCCATGTAGCAAAAGCAATAAATATACTATAATTAAGGCAGA
TCAGACCACAAGGATTTTCCATATAGAGATATAGATTATGTTTATTTTATTTTTGATTTCTGAAATTGTTTGTACATTTA
TTCACTAGCTGGATTCACAAAAGCTAAATTACTCATTTTGTCATTGATTTATTGAAATGATTTGCCATCATATTCTATGT
AGCAAAAGCAATAAATACTATGTGACTAATATGGAGATCTGAGAAGGATTTTCTCTTGGAGGGGTGTCTATATATAGAAA
TACATATAGTCGGCATGCACCCCAAAAGCTAAAGCAGTCATTTTGTCATTCATTTATTGAAATGATTTGCCATCATATTC
TATGTAGCAAAAGAAATAAATACTATGTGACTAGTATGGAGATCTGAGAAGGATTTTCTCTTGGAGGGTTGTCTATATAT
AGAAATATATATAGTCAGCATGCACCCCA-----------------------------AATGCAAAATGCAATGGTCAGT
GTTTCAACATTTGTAGCTATGTTTCTCGCCGTGCTCGCCATCGTTTCCTCTAGCCTCCTTGTTGCCCATGCTGACACTGA
TTTCATCTCCTGCACATGTAACAAGACCAACAACACCGCATTGTGCATAGCCGTGATTACCGTCAAGCCACAAAGCTCCC
ATGCCTCCACTGAGCATGACCTCGCCAGTATTGCGTTGAATATCGCCACTAACACCGCCAAACACAATGTCGAGGTCATC
AGTGACCTATCCAAGAACAACCAGAGCACACCGGAGGGGTTTGCAATTGCCATCTGCCTCAAGGCTTACACTGAAGCCAC
TAGTGCCCTGGAGATTTTTGCCGACTTATACTTCGAAAGAGGGTTGTACCCTTCTACATTGAACGTTGTTTCATTTGCAA
TGGGTGCTAGTGACACATGCAAGGAAGCGTTCAAATGGATCAAGAAGAAGTCCCCCGTGTCCTACATAGATCGTGAGATG
ACGGAGCATTGTAGTGTCGTCAGCAACCTCATAAACCTACTTGTCCCCAAGTGATGACATGTCATTCCTGCCTCATGTAT
GCCTATTGATTTCAATAATTAGCCGACTGTATCTGAAAATGTTATGGCGGTCATGCAATTTATGAGTTATCGAGTTATAT
CAGTTTTATATGAGATGAACCCTAGGAATACCATATAGATTGCAACTCTATTAATTTTAACCACATGGTATTTAGTTTTC
TCTG-TTTTTCCTGGGATCCTAAACTCCCTTTTGTATAGTGCTGCTACAATTTCTCAAACAAAATCAATAAAAGTACACA
CACTAGGAGAAATCCTACTGTTTCTCGTAAAAGAATGAATGGGAAGTAACCTGTGAGTGAAGCCAAACATGGTAGTAGCA
TTTCCCTCCCATGCAGCCAAGAAGCAGAGCACCCTGTATTCTACATTGTATCTAGATAAATCTAAGACAAACTTTTTGAA
TGGAGCTAATACTATGGTAGATAAGAAAAAGAAGCAGAGCACCCCTCCATGCTGCAAGAGATGAAGACATCTCTAGATAT
CCACATAGACAAAAATGACAAAGGAACATTGACTACAAAGTGTAAAGAGTTATGGAAGCATCTCAACCCTCATACACGAG
AGCCCGCATGTATATATTGATAGGATGATCAATGGGTACAAGCCTAGGTAGAGATTGCATAATTGAGAGCGGTGGTTATA
GAGAGAATCAGAGGAAGAGATAGAATTAGTTAAACATGAGAACTATCTCTAACAACCTCAACAGAAAGCCTACGCTAGAG
TAGTCACCATGTCGAGCATGTCAAGGGTGCGGCCACGCCAAAGGCTGGCCCATGCCAAGTGTCAACGGCGCCTCCTCCTC
TGTAACATATTGCATGTTCAACACCCTCCCTTAATCTGAACTTCTCAGCTTAAGATTACGTTTGAACTCTTCAAATTGTC
TTGTAGCCAAGGCCTTTGTAAACCCATCTGCAACTTGGTCTTTTGAAGGAATAAATCAAATCTCCAACTCCTTGCTTGCA
ACCCTTGTTGGGGAA
>chr3B_3
--AAAAAAGGTGATAATAGAGATGCGCAAG-AATGAGGCACTTGCAACATGATTTTAGATTCAAATCAATTTTTCTGCTA
AACAATATAAATGATGTTTATATCTACATTTGTCAATTGCTAGGTGGTGGCCCGGTGGCTAGTGGAATACACGTGCAAGG
GGAGGTCTTATGTTAAAATCATGTAAGCATTATTTTTTTTATTATGTTTCTATTTCATTATTTGTCACTGACAAGTGGGA
CCCACATGCATGCATGAAGCGTGGGGCAGCTGGCTGCAGAGTTAAGGGAAATGTACTCAAATGTACCCATAAACAAGTTG
TGGGGCTGATTTGTGTCATTTTTTAAGTTTATGTTTGAATCTGTACATCTAATGCAAGTTTATGTACTAAAAGTGTAATT
AACTCTTTATTTGTTCATTTGCAAAACTGGTTGTGCGTTGATTCACTAGATGAATTCATGGGAGCTAGAGCACTCATTTG
A----TCATTCGTTCATTTATTTGGTTTGCTGATGCAATCCATGTAGCAAAAGCAATAAATATACTATAGTTAAGGCAGA
TCA-ACCACAAGGATTTTCCATATAGAGATATAGATTACGTTTACTGTTTGATTTG----TGAAATTGTTTGTACATTTA
TTCACTAGCTGGATTCACAAAATCTAAAGCACTCATTTTATCATTCATTTATTGAAATGATTTTCCATCATATTCTATGT
AGCAAAAGCAATAAATACTATGTGACTAATATGGAGATCTGAGAAGGATTTTCTCTTTGAGGGG----------------
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---------------------------------------------------------------------TGTCTATATAT
AGAAATATATATAGTTAGCATGCACCCCAACAACACAACAATACCAAGCTAGGTGAAAGATGCAAAATGCAATGGTGAGT
GTTTCAACATTTGTAGCTATGTTTCTCGCCGTGCTCGCCATCGTGTCCTCTAGCCTCCTTGTTGCCCATGCTGACACTGA
TTTCATCTCCCGCACATGCAACAAGACCAACAACACCGCATTGTGCATAGCCGTGCTTACCGCCAAGCCACAAAGCTCCC
ATGCCTCCACTGAGCATGACCTCGCTAGTATTGCGTTGAAGATCGCCACTAATACCGCCAAACACAATGTCAAGGTCATC
AGTGACCTATCCAAGAACAACCAGAGCACACCAGAGGCGTTTGCAATTGCCATCTGCCTCAAGGCTTACACTGAAGCCAC
TAGCGCTCTAGAGATTTATGCCGACCTATACTTTGAAAGAGGGTTTTACTCTGATACGTTGACCGTTGTTTCATTTGCAA
TGGGTGCTAGTGACACATGCAAGGAAGCGTTCAAATGGATTAAGAAGAAGTCCCCAATGTCCTACATAGATCGTCAGATG
ACGGAGCATTGTAGTGTTGCCAGCAACCTCATCAACCTACTTGTCCCCAAGTGATGACATGCCATTCCTGGCTCATGTAT
GCCTATTGATTTCAATAATTAGTCGACTGTATCTAAAAATGTTATGGAGGTCATGCAATTTATGAGTTATCGAGTTATAT
CAGTTTTATATGAGATGAACCCTAGGAATACCATATAGGTTGCAACTCTATTAATTCTAACCACATGGTATTTAGTTTTC
TATGTTTTTTCCTGGGATCCTAAACTCCCTTTTGTATAGTGCTGCTACAATTTCTCAAACAAAATCAATAAAAGTACACA
CACAAGGAGAAATCCTACTGTTTCCCGTAAAA-AATGAATGGGAAGTAACCTATGAGTGAAGACCAACATGGCAGTAGCG
TTTCCCTCCCATGCAGCCAAGAAGCAGAGTACCCTGTATTCTACATTGTATCTAGATAAATCTAAGACAAAGTTTTTGAA
CGAAGGTAATACTATAGTAGATAAGAAAATGAGGCAAAGCACCCCTCCATGCTGCAAGAGATGAAGACATCTCTAGATAT
CCACATAGACAAAAATGACAAAGGAACATTAGCTACAAAGTGTAAAGAGATATGGAAGCATCTCAACCCTCATACACGAG
AGCCCGCATGTATATATTGATAGGATGGTCAATGGGTACAAGCCTCGGTGGAGATTGCATAATCGAGAGCGGTGGTTATC
GAGAGAATTAGAGGAAGAGATAGAATTAGTTAAACATGAGAACTATCTCTAACAACCTCAACAGAAAGCCTATGCTAGAG
TAGTCACCACGTCGAGCACGTCAAGGGTGCGACCACGCCAAAGGCTGGCCCATGCCAGGTGTCAATGGCACCTCCT----
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>chr3B_821
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----------------------CAAAAGTTAGAGTACTCATTTGATCATTCATTTATTCGTATGATTTGCAATCGTATTC
CATGTAGGAAAAGCAATAAATGTAATGCGACTAATATATAGATATGATAAGGATTTTCTCTTGCAGGGGTGTC-------
-----TATATATAGTCACCATGCACCACACCTACACAACAATACCTAGGTAGGTGCAAAATGCAAACTGCAATGGCGAGT
GTTTCAACCTTTATAGCTATGTTTATCATCATGCTCGCAGCCATGTCCTCTGGCATCCTTGTTGCCTATGCTAACACCGA
ATTCATCTCCCGCACATGCAACAAGACCAACAACACCGCATTGTGCATTGCCGTGCTTACCACAAAGCCACAAAGTGCCC
ATGCCTCCACCGAACACGACCTCGCCAGAATCGCATTGGAGCTCACCATTGACACCGCCAAACACAACGTCAAGGTCATC
AATGACCTAGACAAGAAAAAACAGAGCAAGCCGAAGGCATTTGCACTGGCCATCTGCCTTAAGGCTTACACTGAAGCCAC
TAGTGCCCTTGAGATTTATGCTGTCTCGAACTTCCAAATGGGGTCGTACCCCAGTACGTTGGCCAATGTTTCATTCGCGA
TGGGCGCTAGTGATACATGCAAGAAAGCGTTCAAAAGGATCGGCAAGGAATCCCCAGTGTCCTACATAGACCGCGAGATG
ATAGAGCACTGCAGTGTCGCCAGCAACCTCATCAACCTACTTGTCCGCAAGTGATGACATTGCATTCCTGGCACATAGAT
GCCTATTG------------------------------------------------------------------------
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>chr3D_821
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----------------------CAAAAGTTAGAGTACTCATTTGATCATTCATTTATTCGTATGATTTGCAATCGTATTC
CATGTACGAAAAGCAATAAATGTAATGCGACTAATATGTAGATATGATAAGGATTTTCTCTTGCAAGGGTGTC-------
-----TATATATAGTCACCATGCACCACACCTACACAACAATACCTAGGTAGGTGCAAAATGCAAACTGCAATGGCGAGT
GTTTCAACCTTTATAGCTATGTCTCTCGTCATGCTCGCCGCCATGTCCTCTGGCCTCCTTGTTGCCTATGCTAACACCGA
ATTCATCTCCCGCACATGCAACAAGACCAACAACCCCGCATTGTGCATTGCCGTGCTTACCACAAAGCCACAAAGCGCCC
ATGCCTCCACCGAACACGACCTCGCCAGAATCGCATTGGAGCTCACCATTGACACCGCCAAACACAACGTCAAGGTCATC
AATGACCTAGACAAGAAAAAACAGAGCAAGCCGGAGGCATTTGCACTGGCCATCTGCCTTAAGGCTTACACTGAAGCCAC
TAGTGCCCTTGAGATTTATGCA-TCTCGAACTTCCAAATTGGGTCGTACACCAGTACGTTGGCCAATGTTTCGTTCGTGA
TGGGCGCTAGTGATACATGTAAGAAAGCGTTCAAAAGGATCGGCAAGGAATCCCCAGTGTCCTACATAGATCGCGAGATG
ACAGAGCACTGCAGTGTCGCCAGCAACCTCATCAACCTACTTGTCCGCAAGTGATGACATTGCATTCCTGGCACATATAT
GTCTATTGCTTTCAATAA--------------------------------------------------------------
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>SNPs
SS--------------S----SS-----SSS------S----------SS------------------------------
S--------------S-S-----------------------------------S----------SS----S---------
---S--------------------------------S------S---------------S--S-----------------
----------------------------S--S-----------------------------------------S------
-----------------------S------------------S-----------------------------S-------
----------------------------------S----------S------------S-----S---------------
-SSSS------S--------------------S-S--S-------------------------------S----------
---S----------------------------------S-----S-S-S-SS--SSSSSS--------------------
----------------------S-----SS---------S-----S-----------------S----------------
---------------------------------------------------------S------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS------S--S--S-S------SS-------------SSS---------S---S-----
S------S-----S-------SSS---S-----S----S----S---S---------------S----S-----------
----------------------------------------------------------------------------S---
--------------------------------------------S-----------------------------------
----------S-------S------------------------------------S------S-----------------
----------------------------------------S------------------------------S--------
-------------------------------------S------------------------------------------
---------S-------S----------------------------------SS---S----S-----------------
-------------------------------------------------------S------------------------
-------------------S------------S----------------------------S--------S---------
----------------------S-----------S------------S--------------------------------
--------------------------------------S-----------------S-----------------------
-S------------------------------------------------------------------------------
---S--------------------S-------S-------------------S---------S-S-------S------S
-----------------------------S-----------------------------------------S--------
S-S--S---------S-------------S--S---S-------------------------------------------
------------------------------SS-----------------S------------------------------
---------------------------S-----------------S---S-------------S---------------S
--------S---------------------------------------------------------------S-------
---------S--------S------------S-------------------------S-------S---S------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_50
------------------------------AAATGAGCCACTTGCAACGC------------------------------
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>reverse_1183
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--------------------------------------------------------------TCAAGCCACAAAGCTCCC
AT------------------------------------------------------------------------------
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>forward_832
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------------GCATGCACCCCAAAAGCTAA------------------------------------------------
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>reverse_2544
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---------------------------------------------------------------CCAACTCCTTGCTTGCA
ACC------------
