>input_sequence_76756
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-----------------------------------------ATGGCGAACCGAGCAACATCTGTAGCCATGGTTTTCATT
ATTCTCGGCATCATGTCCTTCGGAATCTCTGTCGCCGATGCCGACGCCAGCTTTGTTGCCCGGACTTGCAACAAGACCAA
GAATGCCTTGTTGTGCATGTCCGTGCTGCACATAGATCCAAAGAGTACCTATGCCTCCACTGAGTTGGAACTTGCCAACA
TCGCGGTGAAGATCGCCGGTGACACCGCCAACCACAACGCCAAGGTCATCGATGACCTAGCCAAGAAAAAGAAGGGCACG
CCAGAGGGGGGCGTGTTAAACGTCTGCCTCTGGTCCTATCAATTCGCGGGCAACGAACTCGAGGTCGACGTCCGCACTCT
CCTTCATGATGGGGACTACATTACCGCGTCGAGTCTCATGTTGGATATCAAGGGCGTTGGTGATCATTGCGAGAATGCGT
TTAAGGGGATGGAGAAGAAATCCCCAGTGACAAACATAGATCGCGAGATGACAGAGCGATGTGGCGTCGCAGGCGAACTC
ATTGCCATGCTTATCCACAAGTGA--------------------------------------------------------
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>chr3A_1_TraesCS3A01G005800
CCGGGCGCGCAAGCTAGCCAGCTATCACGCGGCCACCGGCCGGCTAGCACGAGCGCAGCTAGCTACCTAGCATGCCGCGG
GCAACTAGCTAGCAAGCACGCACACGCGCAGCTAGCTAGCTAGCAAGGGCGCGGCCACGGTGAGCACAGATGGCGGCCGC
GCACTGGGGAGGCGAGGCCGACGCCGAGCGTCCGCCTTGTCTGAGCCGTTCGACGCACAGCGGTTCGACCTCCATGGTCT
CGTCCGTCTCCAGTACGACCTCCATGGCCTCGTCGGGCTGGAGACGAAGGTGCTCCGGTTGAGCGGCGAGGCTGCAGCAG
CCATGCGGCGGCGTGGCCAGTGGTGGGAGTGGCGGACCAAATTTGGGTTGAAAATGGGTGTGAATGGACACAAAACGGAC
ACAAAATAAAAATGGGTCTCTGCATTGGGCCGTCATTTTTGTCGGCGAAGACCCAAATGGACCCCCGCGAACAAAATGGG
TCTCTGTGTTGTGCCGTCATTTTTGTCGGCGCAGACCCAAACGGACGCCCGCGGACAAAATGGGTCTCCGCGTTGGGGTT
GATCGAAGGAGCCAATGCGTTTAAAAGGACTGCGGGTTGAATACTAAAAAATGCAGGGTCCTTTGTGTAAGAACGAAATA
TTTTCTCAGATTATCCACTTTAAAAAGGACTGTGGGTTGTATTATTGAGAAACACAGGGGGATTTTAGCAAAAGTGTCAC
TACGGTGAGCAGGCGGGTAGAGGCGATAATTGCTTTATTATTATATATATTATAGGGAAAGATCTGATTTGATTTGATTT
GATTTGATTTGATTCGGTTTGATTTGATTGATTTGATTTGATATGACATTTGATCTAGCGAGAACCAATAAATACACAAT
CATACAATCATTTAGGCGGGTCATATCATAAGGATTTTCTCGTGTGTGTACCT-TTACATATAGAAGAAAGAATCACCGA
GATAGCAACGACACCTAGGTAGGTGCAAACTAAAAGTTGCAATGGCGAACCGAGCAACATCTGTAGCCATGGTTTTCATT
ATTCTCGGCATCATGTCCTTCGGAATCTCTGTCGCCGATGCCGACGCCAGCTTTGTTGCCCGGACTTGCAACAAGACCAA
GAATGCCTTGTTGTGCATGTCCGTGCTGCACATAGATCCAAAGAGTACCTATGCCTCCACTGAGTTGGAACTTGCCAACA
TCGCGGTGAAGATCGCCGGTGACACCGCCAACCACAACGCCAAGGTCATCGATGACCTAGCCAAGAAAAAGAAGGGCACG
CCAGAGGGGGGCGTGTTAAACGTCTGCCTCTGGTCCTATCAATTCGCGGGCAACGAACTCGAGGTCGACGTCCGCACTCT
CCTTCATGATGGGGACTACATTACCGCGTCGAGTCTCATGTTGGATATCAAGGGCGTTGGTGATCATTGCGAGAATGCGT
TTAAGGGGATGGAGAAGAAATCCCCAGTGACAAACATAGATCGCGAGATGACAGAGCGATGTGGCGTCGCAGGCGAACTC
ATTGCCATGCTTATCCACAAGTGATCAATCTTTGATCATATGTACAAGCTCCCGTCAATAATTAATCAGTTCGTCATCTA
GCAACATGTTCGGTCATTGATGTTATTGTGAATTATTATTGAGCTTAGTACCACATAGAATGTCAATCTTACCAACTCGG
TAACTCCAGTACTACTTTGGTTCCAAAAGCGACCAAGCATGATATCTTGTGTTCCGAGT--TGGCTAGATGACGTATCGG
CAAACCTCCCACGTATATCCTAGTACACGAGGACATGGGTTCCTTCCTTTTTGATCCTGTGATCCCACACAGACACACAG
TAAGACAGTTACCTCGTAACAACCGATACTAAAATTGTTCTA--------------------------------------
-AGACGGAGGCTAGCGGCGATGTCTGCTAGTTTGTTTGATCGCTTGGTTTCCTGCCCGGAGGCGCAGCCCATAGGCCATA
GCCCTGCTCGCATGAGGAATTTCCATACCTTATGGCACAGCAAGCCA------TCCGCGCACAGGCGCACTGCATCACAA
GAAGGTGCCTTCTCAGATGATCTAGC-TTATTAATATAGCTTATGCTTTTGATTCTGTTGAATGGCCGTTCCTCGTTGAA
ATTATGCAGCCTTTTGGTTTTGGGAACAATTGGATTCGATGCACGACTCTGTTCCTCGTTGAAATTATGCAGCGTTT---
-----------TG-GTTTTGCTGAATGGACGTTTGGGTGACCCAATCTGGCAGGTTTCTTCGAGAGGTTGCTTAATGCCA
AGTTT-CTGCGC-GTAGGTCATCC-----------AGTTTTTCTTCGCTATAACACCATCCTGTAAATACTCTTTT-CTA
TTCTCAAT------ATAATGACACAAAAATCT------------------AAAAAAGCGCACAAGTAGAAAAACAGTCGG
TGGCCGATACCAAGGTCAGGACATCACCTATCTGTCCACCAGGTGCGCTCAAACTGAAACCATAT-TTAAATTAGACTAC
TTTGTTGTGTTGAAT----ATATAGATGAGTATATTGTGTGCAAATGCATCAGTTCATCAATCAAATTATCTTGAGAAGA
TACATAGTAG
>chr3B_621
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------------------------------------------------------------CTTTGTGTAGGAACGAAACA
TTTTCTCAGATTATCCACTTAAAAAAGGATTGTGGGCTGTATTACTGAGAAACACAGAGGGTC-TTAGGAAAAGTGTCAC
GACGGTGAACGGGCGGGCAGAAGCGATAATTGCTTTATTATTA-----------GGAAAAGATTTGATTTGATTTGATTT
GATTTGATTTGATTGAT----------TTGATTTGATTTGATATGACATTTGATATAGCGA-AAACAATAAATATACAAT
C--------ATTTAGGCGGGTCATATCATAAGGATTTTCTCGTGTGTGTGTACCTTATATATAGAAGAAAGAATCACCAA
GACAGCAACGACACCTAGCTAGGTGCAAACTGAAAGTTGCAATGGCGAACCGAGCAACATCTGTAGCCATGGTTTTCATT
ATTCTCGGCATCATGTCCTTCGGAATCTCTGTCGCCGATGCCGACGCCAGCTTTGTTGCCCGGACTTGCAAGAAGACCAA
GAATGCCTCGTTGTGCATGTCCGTGTTGCACATAGATCCAAAGAGTACCTATGCCTCCACTGAGTTGGAACTCGCCAACA
TCGCGCTGAAGATCGCCGGTGACACCGCCAACCACAACGCCAAGGTCATCGATGACCTAGCCAAGAAAAAGAAGGGCACG
CCAGAGGGGGGCGTGTTAAACGTCTGCCTCTGGGCCTATCAATTCGCGGGCAACGACCTCGAGGTCAACGTCCGCACTCT
CCTTCACGGTGGGGACTACATTACCGCGTCGAAACTCGTGTTGGATACCAAGGGCGTCGGTGATCATTGCGAGAATGCGT
TTAAGGGGATGGAGAAGAAATCCCCAGTGACAAACATAGATCGCGAGATGACAGAGCGATGTGGCGTCGCAGCCGAACTC
ATTGCCCTGCTTATCCACAAGTGATCAATCTTTGATCATATGTACAAGCTCCCGTCAATAATTAATCGGTTCGTCATCTA
GCAACATGTTCGGTCATTGATGTTATTGTGAATTATTATTGAGCTTAGCACCACATAGAATGTCAATCTTACCAACTGGG
TAACTCTAGTACTAGTTTGGTTCCAAAAGCGACCAAGCATGATAGTTTGTGTTCCGAGCTCTGGGTAGATGACGTATCGG
CAAACCTCCCCCGTATATCCAGGGTCCAGGCCCAGGGCTCTCCTCAATTTCCCGAATGACCCCTTCGGGAGTCTGGATCG
ACACAGCCTGCCGCCGATGGATCGATCTATCCATCTTCCCGAGACGAACTGAACTGACGGAAGTTCGGCGCCGCTGCACA
GAGACGGAGGCTAGCGGTGTTGTCT---AGTTTGTTTGATCGCTTCATTTCCTGCCCGGAGGCGCAGCCCATAGGCCATA
GCCCTGCTCGCATGAGGAATTTCCATACCTTATGCCCGGAGGCG------------------------------------
----------------------------------------------TTTTGGTTTTGGTGAATGGACG------------
------------TTTGGTTTTGGGAACAATTGGATTCGATGCACG-----------------------------------
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>chr1A_1880
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-AGACGGAGGCTAGCGGCGTTGTCT---A----GTTTGATCGCA-TGGTTCCTGCCCGGAGGCGCAGCCCATAG------
-CCCTGCTCGCATGAGGAATTTCCTTAT-----GGTACGGCAAGCCA------TCT--------GCGCACTGCATGGCAA
GAAGGTGCCTTCTCTGATGATCTAATTTTATTGATATAGCTTGTGCTTTTGACTTTGTTGGATGGCCGTTCCTCGTTGAA
ATTATGCAGCATTTCGGTTTTGGGAACAATTGGATTCGATGCACAACTCTGTTCCTCTGTTG--CTGTTACAAGCATGTA
TATGGTTACAA-GGGTCATGGTGAATGGACGTTTGGGTGACCCAATCTGGCAGGTTTCTTCAAGAGGTTGCTTAATGACA
AGTTT-CGGCAGTTTAGGTTGTCC-----------GGTTTTTCTTCGCTATAATACCATCCTGTAAATACTCTTTT-CTA
TTCTTAAT------ATAATGACGCAGAAATCTTTTGCGTGTTCTAAAAGGAAAAAGGCGCACAAGTA--AAAACAGTTGT
TAGCCGATACCAAGGTGAGGGCATCACCCATCTGTCCACCAGGTGCGCTCAAACTGAAACCCTATATTAAGTTGGACTAT
TTTGTTCCGTTGAATGATTATATTAGTGCGTATATTGTGTGCACATGCAT-AGTTCATCAATCAAATTATCTAGGGAAGA
TATATGGTAG
>chr1B_1881
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--GACGGAGGCTAGCGGTGTTGTCT---A----GTTTGATCGCTTTGTTTCCTCCCCGGAGGTGCAGCCCATAT------
-CCCTTCTTGCATGAAGAATTTTCATAT-----GGTACAGCAACAACAAGTCGTTT--------GTGCACTGCATCGCAA
GAAGGTGCCTTCTCTGATGATCTGAC----TTACTATAGCTTGTGTTTTTTAGTCTGTTGGCTGGCCATTCCTCATTGAA
ATTATGCAGCGTTTCAATTTTAGGAACAATTGGATTCGATGCACGGCTTTGTTCCTCT-TTG--CTGCTAC---------
------TACAA-GGGCCATGGTGAATGGACGTTTGGGCGACCCACTCTGGCAGGTTTCTTCAAGGGGTTGCTTAATGTCA
AGTTT-CGACAGTGTACGTCATCC-----------AGTTTTTCTTCGCTATAACACCATCCTGTAAATACTCTTTTTCTA
TTCTTAAC------ATAATG-----------TTTTGCGCATTCTGTAAT---AAAAATGCACAAGTA--GAAACAGCCGG
TGGCCCATACCAAGGCGAGGGCACCACCGATCTGTCCACCAGGTGCGCTCAAACCGAAACCCTAT-TTAATTTAGACTAT
TTTGTTCTGTTGAATGATTATATTAGTGAGTATATTGT------------------------------------------
----------
>chr7D_1882
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---ACGGAGGCTAGCGGCGTTGTCT---A----GTTTGATCGCTTCGTTCCCTGCCCGGAGGCGCAGCCCATAG------
-CCCTGCTCACATGAGGAATTTCCTTAT-----GGTACGGCAAGCCA------TCT--------GCGCATTGCATGGCAA
GAAGGTGCCTTCTCTGATGATCTAATTTTATTGATATAGCTTGTGCTTTTGACTTTGTTGGATGGCCGTTCCTCGTTGAA
ATTATGCAGCGTTCCGGTTTTGGGAACAATTGGATTCGATGCACAACTCTGTTCCTCTGTTG--CTGTTACA--------
----------A-GGGTCATGGTGAATGGACGTTTGGGTGACCCAATCTGGCAGGTTTCTTCAAGAGGTTGCTTAATGACA
AGTTT-CGGCAGTGTAGGTTGTCC-----------AGTTTTTCTTCGCTATAATACCATCCTGTAAATACTCTTTT-CTA
TTCTTAAT------ATAATGACGCAGAAATCTTTTGCGTGTTCTAAAAGGAAAAAAGCGCACAAGTA--AAAACAGTGGG
TAGCCGATACCAAGGTGAAGGCATCACCCATCTGTCCACCAGGTGCGCTCAAACTGAAACCCTAT-TTAAGTTGGATTAT
TTTGTTCCGTTGAATGATTATATTAGTGCGCATATTGTGTGCTTATGCAT-AGTTCATGAATCAAATTATCTAGGGAAGA
TATATGGTAG
>chr5D_1882
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---ACGGAGGCTAGCGGCGTTGTCT---A----GTTTGATCGCTTCATTCCCTGCCCGGAGGCACAGCCCATAG------
-CCCTGCTCACATGAGGAATTTTCTTAT-----GGTACGGCAAGCCA------TCT--------GCGCAGTGCATGGAAA
GAAGGTGCCTTCTCTGATGATCTAATTTTATTGATATAGCTTGTGCTTTTGACTTTGTTGGATGGCCGTTCCTTGTTGAA
ATTATGCAGTGTTTCGGTTTTGGGAACAATTGGATTCGATGCACAACTCTGTTCCTCTGTTG--CTGTTACA--------
----------A-G-GTCATGGTGAATGGACGTTTGGGTGACCCAATCTGGCAGGTTTCTTCAAGAGGTTGCTTAATGACA
AGTTT-CGGCAGTGTAGGTTGTCC-----------AGTTTTTCTTCGCTATAATACCATCCTGTAAATACTCTTTT-CTA
TTCTTAAT------TTAATGACGCAGAAATCTTTTGCGTGTTCTAAAAGGAAAAAAGCGCACAAGTA--AAAACAGTGGG
TAGCCGATACCAAGGTGAAGGCATCACCCATCTGTCCACCAGGTGCGCTCAAACTGAAACCCTAT-TTAAGTTGGACTAT
TTTGTTCCATTGAATGATTATATTAGTGCGTATATTGTGTGCTTATGCAT-AGTTCATGAATCAAATTATCTAGGGAAGA
TATATGGTAG
>chr1D_1912
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---------------------------------GTTTGATCGCTTTGTTTCCTCCCCGGAGGTGCAGCCCATAT------
-CCCTTCTCGCATGAAGAACTTTTATAT-----GGTACAGCAACAACAAGTCGTCT--------GTGCACTGCATTGCAA
GAAGGTGCCTTCTCCGATGATCTGATTT----ACTATAGCTTGTGTTTTTTGGTCTGTTGGCTGGCCATTCCTCATTAAA
ATTATGCAATGTTTCAGTTTTAGGAACAATTGGATTCGATGCACGGCTTTGTTCCTCTCTGCTGCTACTACA--------
----------A-GGGCCATGGTAAATGGACGTTTTGGTGACCCAATCCGGCAGGTTTCTTCAAGGGGTTGTTTAATGTCA
AGTTTTCGACAGTGTACGTCATCC-----------AGTTTTTCTTCGCTATAACACCATCTTGTAAATACACTTTT-CTA
TTCTTAAC------ATAATG-----------TTTTGCGTATTCTGAAAT---AAAAATGCACAGGTA--GAAACAGCCGG
TGGCCCATACCAAGGCGAGGGCACCACTGATCTGTCCACCAGGTGCATTCAAACCGAAACCCTAT-TTAATTTGAACTAT
TTTGTTCCGTTGAATGATTATATTAGTGAGTATATTGTGTGCATATGCATCAGTTCATCAA-------------------
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>chr6D_2018
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-----------------------------------------------------------------CGCACTGAATCGCAA
GAAGGTGCCTTCTCTGATGCTCAAAC----TTGATATAGCTCGTGCTTTGGACTCTGTTGGATGGCTGTTCTTCATTGAA
ATTATGCAGCTTTTCGGTTTTGGGAACAATTGGATTCGATGCACGTCTCTCGTCCTCTCTTCTGCTATTACA--------
----------ATG-GTCATGGTGTATGGACGTTTGGGTGACTCAATCTTGCAGGTTTCTTCGAGAGGTTGCTTAATGC--
AGTTT-CGGCAGTGTAGAGCGTCCAGTTATGACGTAGTTTTTCTTCTCCATAACACCATCCTGTAAATACTCTTTT-ATA
TTCTTAATCTTAGAATAATGGCACACTAATCTTTTGCATGTTCTAAAAA---AACA------AGGTA--GAAACTGCCGG
TGTCCGATA-CAAGGTGAGGGCATGACCGATCTGTCCACCAGGTGCAATCAAACTGAATCCCTAT-TTAATTTATACTAT
TTGGTTCGGTTGAATAATTATATTAGTGAGTACA-TGTGTGCATATGCATCAATTCATCAATCAAATTATTTAGGGAATA
TATATAGTAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--------S-
--------------------S--------S------S-------S------------S---SSS----S-----------
S-------S-S------S---S---------------------SSSSSSSSSSS--S------S----------------
--------------SSSSSSSSSSSSS---------------------------S------S--S---------S-----
-SSSSSSSS----------------------------------------SSSS----S--------------------S-
--S---------------S------------S------------------------------------------------
-----------------------------------------------------------------------S--------
--------S----------------S----------------------------------------------S-------
-----S--------------------------------------------------------------------------
---------------------------------S----------------------S---------S-------------
------S-S-----------------------SS---S---------S---------S----------------------
------------------------------------------------------------------------S-------
------S------------------------------------------------------------S------------
------------------------------------------------S----------------------------S--
------S-------S-----------------------------SS------------S-----S---------------
----------S---------SS-SS-SS-SSSSSSS-SSS----SSS---SSSSSSSSSSSSSSS-SSSSSSSSSS-SS-
SS-S-SSS-SS-SS--SSSS-S-SSSSSS-SS-SS-SSS-S---------------------------------------
-------------------S-----SSS-----------------S----------------------------------
-------------------------------------------------------SSSSSSSSS------------S---
--------------S---------S-----------------S-------------------------------------
----------S----------------------------------------------SS--SSSS---SSSSS-SS----
----------------SS--S-----------------------------------------------------------
-------S--SS--------------------------------------------------------------------
----S--------------------S-----------------------------------------SS-----------
----------------S---S-------S--------------------------------S--------S--------S
------S----------------SSS-----------------S----------------------------S-S-----
--S-------
>forward_572
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------------------------------------------------------------------------TTGGGGTT
GATCGAAGGAGC--------------------------------------------------------------------
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>reverse_1788
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---------------------------CGAGGACATGGGTTCCTTCC---------------------------------
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