>input_sequence_76755
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-----------------------------------------------ATGGCAAGCGCAGCAACATCCGTAGCTATTGTT
CTTATTGTGCTCGCCGGCGTGTCCTCCGGCCTCCCTGCCACCTATGCTGACACCAACGTGGCCGCCCGGATGTGCATGAA
GACCATGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTACGCCTCCACGGAGCAGGACGTCG
GCAGCGTCGCGCTGCAGATCGCGAGTGACACCGCTGAGTACAACGTCGGGGTCATCAACAACCTAAATAGGGGCAGCCTA
GGCAAGCCCGAGGGTGGCGCGCTGGCGCAATGCCTCTGGGCCTATCAGGACGCCGACAACAATCTCAAACACAACGCCCG
AACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTTTCGGGCGCCCAGATCGTCGGGGATATCTGCGAGA
ATGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATGTGGCGTCGCGGCG
GAACTCATTGGCCTGCTTACCCACAAGTGA--------------------------------------------------
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>chr3A_1_TraesCS3A01G005600
ATTATGGTACGAAATGAATCTTCATTCTCAGAATAATTATGGAACTCATTAAATGTATACAATGAGAGTACATTTATTTG
TTGATTCACTAAATATTTTGTACAT------CTATGCGAGTATGCGGCAACTAGTATTCATCAGATCCTTCATTTATTTA
TTTGGTTTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCAGATTTTTCAACAGTGGCGTCCAC
AAATAAGAAGAGTCGCCATGATGCACCAACACAACAACACCTTGCTAGGTGCAAAGTGCAAACAACAATGGTGAGCGCCA
CAACATCCACAATTGTGGAAGTCACCTCATCTTCTTCATATCCGCCGAATCATTCTTCCCTTTGATTTACTTTATGTGGG
GGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTCTGAAACAATATACGCTTGACCCTT
AGCTTTCAAAATCGGATAAATGCTGTCCCACAACCCTACCCAGAGTGGTCACTGTCGCATAATATTGGTTGCAGATATCT
CTCAATATACATTTTTTTTGCTGATTTGCTATTCCATTGCTGGTCATTTATAA-TACTCCATCTCACGGAAATTAATGGC
AGTACATTCACTATTTATTTATTGTAAGAGCACATTTATTACTCGATCTGTAGGATTCTGTTTCAAAATTTTTCCAACAT
AAAGAAAAATGTTAGTAACTTGGATCTAAACTCAGCGGAAGTATCAAGTGCATTTATTTGTTGCTGCATTGCACATTTCA
TGACTAAATCACTGTTTGATGAGCTATATTCATTTGATTTGTTGTTACATTTGATGCAGCGAAAGAAATAGATATACCAT
CACGAAGGCGCATCATATCATAAAGATTTTCTCTTGTGCATATCTTATAGATATATAAGAAAGAGTTGAGTGTACTGCAC
CAACAGAACAGAGACAACGCCTAGCTAGTTGCAAACCGAAAACCACAATGGCAAGCGCAGCAACATCCGTAGCTATTGTT
CTTATTGTGCTCGCCGGCGTGTCCTCCGGCCTCCCTGCCACCTATGCTGACACCAACGTGGCCGCCCGGATGTGCATGAA
GACCATGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTACGCCTCCACGGAGCAGGACGTCG
GCAGCGTCGCGCTGCAGATCGCGAGTGACACCGCTGAGTACAACGTCGGGGTCATCAACAACCTAAATAGGGGCAGCCTA
GGCAAGCCCGAGGGTGGCGCGCTGGCGCAATGCCTCTGGGCCTATCAGGACGCCGACAACAATCTCAAACACAACGCCCG
AACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTTTCGGGCGCCCAGATCGTCGGGGATATCTGCGAGA
ATGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATGTGGCGTCGCGGCG
GAACTCATTGGCCTGCTTACCCACAAGTGATCGATCCTATATAAATCTTGGCTCATATGTGTGCGCTCCCTTCAATAATT
AGTGAGTTGTTCATGTAGCGACATATTTTGGCATTGATGAAATTGTGAATTATCGAGCTTAACAACACACAAAACACAAA
-CTTACCAAGTAGACAACTAGTGCCTACAAGCGACCAAGCATGCATGATGCATGTATCAATGATGACATATGTTCGCTCA
TCTAGGTCACCGAACTAACAGGGTTTCTTTGAC--------------------------------AACAATTTCAATCTC
GTCAATCGAGATCGTAAACTTTTTTGGCGGCGGCACACATCAGGTGCTATATTTTAAGTTAGATCTGTTCGGCACAAATT
AATTTCTTTGAGAATTGTTTCTGCCGGCTCGTGCAATTTTGTTTGCATCTATATCTATATCTATATCTATACCAATATAA
AAAGACCCAAAGGGGCAGATCCAATTAATCTCGGTCATCAAATCATGTCAATCCAATGACCTAGACTGTTTCAATGTCGA
GTGCTCAACACGTTTAGCGTGCAGTTAATTTCATGCCAAATATACTCCTGATGTTAATCACATAATAACACACAAATAAT
ATCTTACTTAATATCCGCATGCACTTAATATACTTTCAAATTAACGTTCATTGCACGTACACATTGACTATTACTATTAG
AAATGAAAGAATGTGTGGG-CCATACGGTTGCCTTGCATGGCCATCCACCCACTAGTTGCAGTCACTCAAATCGCATCAC
GGTGGTTAGACCCAAGTAGTCCCTTTTTTTTACATGTACTAGATAGTTTTCTGTGCGTTGCAACGAGACATAAATATTCT
AGTAAGTTGGCCCATGA-TTACCTGCTCATATTAATGTGATTATGTAAATAAATATTTATCATATCCTTCAATGATTTAC
CTACCTAAATAAAATTTAGTATTTTGTTTCGTAAGAATTAATTGTCTTACATAAAAAGTAAGTCGATAAAAGGTGGGACA
GTTAAGACAGTTAAAAAAAGAGATA
>chr3D_5
----TGGTACGAAATGAATCTTCCTTCTCAAAATAATTACGGAACTCATTAAATGTATACAATGAGAGTACATTTATTTG
TTGAATCACTAAATATTTTGTACAT------CTATGCGAGTATGCGGCAAGTAGTACTCATCAAATCCTTCATTTATTTG
TTTGATCTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCAGATTTTTCGAGGGTGGCGTCCAC
AAATAAGAAGAGTCG-CATGATGCACCAACACAACAACACCTTGCTAGGTGCAAAGTGCAAACAACAATGGCGAGCGCCA
CAACATCCAGAATTGTGGAAGTTACCTCATCTTCTTCATATCCGCCAAATCATTCTTCCCTCTGATTTACTTTGTGTGGG
GGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTTTGAAACAATATATGCTTGACCCTT
AGCTTTCAAAGTCGGATAAATGCTGTCCCACAACCCTACCCAGAGTGGTCACTGTCGCATAATATTGGTTGCATATGTCT
TTCAATATACCTTTA-TTTGCTGATTTGTTATTCCATTGCTGGTCATTTAGAA-TATACGATTTGCTA-AAATTAATGGC
AGTCCATTCACTATTTATTTATTGTAAGAGCACATTTATTACTCGATCTGTAGGATTTTGTTTCATT-TTTTTCCAACAT
AAAGAAAAATGTTCACTTGGAAATTCTAAACTCAGCGGAAGTATCGAGTGCATTTATTTGTTGCTGCATTGCACATTTAA
TGACTAAATCACTGTTTGATGAGCTATATTCATTTGATTTGTTGTTACATTTGATGCAGCGAAAGAAATAGATATACCAT
CATTAAGGCGCATCATATCATAAAGATTTTCTCTTGTGCAGATCTTAC--ATATATAAGAAAGAGTTGAGCGTACTGCAC
CAACAGAACA------ACGCCTAGCTAGTTGCAAACTGAAAACCACAATGGCAAGCGCAGCAACATCCGTAGCTATTGTT
CTTATTCTGATCGCCGGCGTGTCCTCCGGCCTCCCTGCCACCTATGCTGACACCAACGTGGCCGCCCGGATGTGCCTGAA
GACCACGAACCCCATGTTGTGCATGGTTGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACGGAGCAGGACGTCG
GCAGCGTCGCGCTGCAGATCGCGAGTGACACCGCTGAGTACAACGTCGGGGTCATCAACAACCTAAACAAGGGCAGCCTA
GGCAAGCCCGAGGGAGGCGCGCTGGCGCAATGCCTCTGGGCCTATCAGGACGCCGACAACAACCTCAAACACAACGCCCG
AACCGGTTTCGACCGTGGGGATTATGTTGGCGCGATGGCTCTCGTTTCGGGCGCCCAGATCGTTGGGGATATCTGCGAGA
ATGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCACGAGATGACTCAGCGATGTGGCGTCGCGGCG
GAACTCATTGGCCTGCTTACCCACAAGTGATCGATCATATATAAGTTTTGGCTCATATGTGTGTGCTCCCTTCAATAATT
AATTAGTTGTTCGTGTAGCAACATGTTTTGTCATTGATGCAACTGTGAAATAACGAGCTGAACAACACACAAAACACCAA
TCTTACCAAGTA--------------------------------------------------------------------
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>chr3B_5
----TGGTATGAAATGAATCTTCCTTCTCAGAGTAATTATGGAACTCATTAGATGTATACAATGAGAGTACATTTATTTT
TTGATTCGCTAAATATTTTGTACATCTATCACTATGCGAGTATGCGGCAACTAGTACTCATCAGATCCTTCATTTATTTA
TTTGATTTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCATATTTTTCGAGGGTGGCGTCCAC
AGATGAGAAGAGTCACCTTGATGCACCGACACAACAACACCTTGCATGGTGCAAAGTGC-AAAAACAATGGCGAGCACCA
CAACATCCACAATTGTGGAAGTTACCTCATCTTCTTCATATCCGCCAAATCGTTCTTCCCTCTGATTTACTTTGTGTGGG
GGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTTTGAAACAATATATGCTTGACCCTT
GGCTTTCAAAATCGGATAAATGCTGTCCCACAACCCTACCCGGAGTGGTTATTGTGGCTTAATATTGGTTGCATATATCT
CTCAATATGCATTTA-TTTGCTGATTTGCTATTCCATTGCTGGTCATTTATAACTATATGATTTGCAA-AAAATAATGGC
AGTACATTCACTATTTATTTGTTGTAAGAGCACATTTTTTTT-CAATTTATTGATG------------------------
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----------------------GCTATATTCATTTGATTTGCTGTTACATTTGATGCAACAAAAGAAATAGATAGACCAT
CATTAAGGCGCATCATATCATAAAGATTTTCCCTTGTGCATATCTTAC--ATATATGAGAAAGAGTTGAGTGTACTGCAC
CAACAGAACA------ACGCCTAGCTAGTTGCAAACTAAAAACCCCAATGGTGAGCGCAGCAACATCCATAGCTATTGTT
CTTATTGTGATCGCCGGCGTGTCCTCGGGCCTCCCTGCCACCTATGGTGACACCAACATGGCCGCCCGGATGTGCCTGAA
GACCACGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACGAAGCAGGACGTCG
GCAGCGTCGCGCTGCAGATCGCGAGTGACACTGCTGAGTATAACCTTGGGGTCATCAACAACCTAAACAAGGGAAGCCTA
GGCACGCCCGAGGGAGGCGCGCTGGCGCAATGCCTTTGGGCCTATCAAGACGCCGACAACAACCTCAAACACAACGCCCG
AACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTGTCGGGCGCCCAGATCGTCGGGGATATATGCGAGA
ACGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATGTGGCGTCGCGGCG
GAAGTCATTGGCCTGCTTACCCACAAGTGATCGATCCTATATAAATCTTGGCTCATATGTGTGTGCTCCCTTCAATAATT
AATTAGTTGTTCATGTAGCAACATGTTTTGTCGTTGATGAAATTGTGAATTATCGAGCTTAACAACACACAAAACACAAA
-CTTGCCAAGTAGACAACTAGTGCCTGCAAGCGACCAAGCAT----GATGCGTGTATCAATGATGACATATGTTCGCTCA
TCTAGGGCACCGAACCAACAAGGTTTCCTTGACAACAACATGTTTAGATGAGCTATTTCATCTACAACAATTTCAATCTC
GTCAATTGAGATCGTAAACTTTTTTTATGGCGGCACACATCAGGTGCTATATTTTAAGTTAGATCTGTTCCGCACAAATT
AATTTCTTTGAGAACTGTTTCTGCCGGCTCGTGCAATTTTGTTTTA----------------------------------
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--------------------------------------------------------------------------TATCAG
AAACGAAAGAATTTGTGTGGCCATTCGGTTCGCTTCCATGGCCATCCACCCACTAGTTGCAGTCACTCAAATCGCATCGC
ATTGGTTCTATCCAAGTAGT-CCTTTTTTTTACATGTACTAGATTGTTTTCTGTGCGTTGCAACGAGATATAAATATTCT
AGTACATTAGCCCGTGATTTACCTGCTCATATTAATGTGATTGTGTAAATAAATGTTTA-CATATCCTTTAATGATTTAC
CTACCTAAATAAAATTTAGTATTTTGTTTCGTAAGACA--------------AAAAAGTAAGTCAATAAAAGGTGCGACA
GTTAAGACAGTTAAAAAAA------
>chr3B_5
----TGGTACGAAATGAATCTTCCTTCTCAGAATAATTATGGAACTCATTAGATGTATACAATGAGAGTACATTTATTTT
TTGATTCGCTAAATATTTTGTACATCTATCACTATGCGAGTATGCGGCAACTAGTACTCATCAGATCCTTCATTTATTTA
TTTGATTTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCATATTTTTCGAGGGTGGCGTCCAC
AGATGAGAAGAGTCACCTTGATGCACCGACACAACAACACCTTGCATGGTGCAAAGTGC-AAAAACAATGGCGAGCACCA
CAACATCCACAATTGTGGAAGTTACCTCATCTTCTTCATATCCGCCAAATCGTTCTTCCCTCTGATTTACTTTGTGTGGG
GGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTTTGAAACAATATATGCTTGACCCTT
GGCTTTCAAAATCGGATAAATGCTGTCCCACAACCCTACCCGGAGTGGTTATTGTGGCTTAATATTGGTTGCATATATCT
CTCAATATGCATTTA-TTTGCTGATTTGCTATTCCATTGCTGGTCATTTATAACTATATGATTTGCAA-AAAATAATGGC
AGTACATTCACTATTTATTTGTTGTAAGAGCACATTTTTTTTTCAATTTATTGATG------------------------
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----------------------GCTATATTCATTTAATTTGCTGTTACATTTGATGCAACAAAAGAAATAGATATACCAT
CATTAAGGCGCATCATATCATAAAGATTTTCCCTTGTGCATATCTTAC--ATATACAAGAAAGAGTTGAGTGTACTGCAC
CAACAGAACA------ACGCCTAGCTAGTTGCAAACTAAAAACCCCAATGGTGAGCGCAGCAACATCCATAGCTATTGTT
CTTATTGTGATCGCCGGCGTGTCCTCGGGCCTCCCTGCCACCTATGGTGACACCAACATGGCCGCCCGGATGTGCCTGAA
GACCACGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACGAAGCAGGACGTCG
GCAGCGTCGCGCTGCAGATCGCGAGTGACACTGCTGAGTATAACCTTGGGGTCATCAACAACCTAAACAAGGGAAGCCTA
GGCACGCCCGAGGGAGGCGCGCTGGCGCAATGCCTTTGGGCCTATCAAGACGCCGACAACAACCTCAAACACAACGCCCG
AACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTGTCGGGCGCCCAGATCGTCGGGGATATATGCGAGA
ACGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATGTGGCGTCGCGGCG
GAAGTCATTGGCCTGCTTACCCACAAGTGATCGATCCTATATAAATCTTGGCTCATATGTGTGTGCTCCCTTCAATAATT
AATTAGTTGTTCATGTAGCAACATGTTTTGTCGTTGATGAAATTGTGAATTATCGAGCTTAACAACACACAAAACACAAA
-CTTGCCAAGTAGACAACTAGTGCCTGCAAGCGACCAAGCAT----GATGCGTGTATCAATGATGGCATATGTTCGCTCA
TCTAGGGCACCGAACCAACAAGGTTTCCTTGACAACAACATGTTTAGATGAGCTATTTCATCTACAACAATTTCAATCTC
GTCAATTGAGATCGTAAACTTTTTTTATGGCGGCACACATCAGGTGCTATATTTTAAGTTAGATCTGTTCCGCACAAATT
AATTTCTTTGAGAACTGTTTCTGCCGGCTCGTGCAATTTTGTTTTA----------------------------------
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--------------------------------------------------------------------------TATCAG
AAACGAAAGAATTTGTGTGGCCATTCGGTTCGCTTCCATGGCCATCCACCCACTAGTTGCAGTCACTCAAATCGCATCGC
ATTGGTTCTATCCAAGTAGT-CCTTTTTTTTACATGTACTAGATTGTTTTCTGTGCATTGCAACGAGATATAAATATTCT
AGTACATTATCCCGTGATTTACCTGCTCATATTAATGTGATTGTGTAAATAAATGTTTA-CATATCCTTTAATGATTTAC
CTACCTAAATAAAATTTAGTATTTTGTTTCGTAAGACA--------------AAAAAGTAAGTCAATAAAAGGCGGGACA
GTTAAGACAGTTAAAAAAA------
>SNPs
SSSS-------------------S--------------------------------------------------------
--------------------------------------------------------S-----------------------
----S------------------------------------------------------------S-SS-----------
-----------------------------------------------------------------------S--------
----------------------S-----------------------S--------------S-----------S------
-------------------------------------------------------S------------S-----------
-------------------------------------------------------------------------S------
--------------SS----------------------------------------SS-S--S-SSSSS-----------
---------------------------------------------------------S-------SSS------------
-------------SSSSSSSSSSS---------------------S--------------------------------S-
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--SS-------------------------------------------SSS------------------------------
----------SSSSSS--------------------S-------------------------------------------
---------S-----------------------------------------------------------------S----
-----S---------------------------------------------------S----------------------
-------------------------------------------------------------------S-S----------
--------------S-----------------------------------------------S-----------------
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---------------------------------------------------------------S----------------
-S-S---------------S----S-----S-------------------------------------------------
--------------------------S---------------SSSS-----S----------------------------
------S--------S----S------S----------------------------------------------------
------S------------------SSS------------------------------------------S---------
--------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--
---S--------S----S------S-----SS---S------------------------------------------S-
SS-----SS-S---------S-----------------------S-----------------------S-----------
----SS--S----S----------------------------S-----------S----S---------S----------
------------------------------------SSSSSSSSSSSSSSSS------------S---------------
-------------------SSSSSS
>forward_976
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---------------------------------------------------------------------------TGCAC
CAACAGAACAGAGACA----------------------------------------------------------------
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>reverse_2409
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--------GGCCCATGATTACCTGCTCA----------------------------------------------------
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