>input_sequence_76753
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-----------------------------------------------------------ATGGCCCATTCCTGCCACGCC
TACGATCTTGTGCTACGACGGTATCTCTTGGCCCTGCACCACCTCCTCGACTACGTCCGCTTCGTCGCGGCGGTCGTCCT
GGACCGCCTCGGCATCGTCTCGTTCGACGGCGAGATGCTGCCCGGTGAGCCTTGGAGCGAGCTCGTCGACACTGCGCCGA
TGGAGCGCCTCATGGAGGCAGCGTTCTGGCAGCCCAGCTCACCGCCGAAGGTGAATCGTTCGTCTTCGTGGACGGCGCCA
CAGTACAGACGACCGCGGGTTGCGCCGGCGGATGTCGAGGGAGCCGAGGACGACGACGGGTGCGTGGGCATCTGCGCGAT
TTGCTTGGCGGCGCTCGACGTGGGAGGGCAACTGGTCACGGAGTTGTGCAACTGCTCGCATGCGTTCCACGCCGCCTGCA
TCGATTCTTGGATCGGCAGCGGCGAGGC---CGGCACTTGCCCGATGTGCCGCACCCCGACGGTAC---CAACGGCGTGG
TGGAACGGTTGGCGAGAAGTAGTGCCACGCACGTCTTTATCTCCTTGA--------------------------------
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>chr2D_1_TraesCS2D01G392600
TGTAGAATTCATGGGCACAAGAGCACAACATGCCCTGCCAGAGGGGATGTGCCAAAGGCACCTAGGAAATCTCCGCGCTG
CTCAAAATGTGGGTGACAGGCCACAGGAATAACGCATGTAGCAACCCGCCTAAAGTCTGAGAAAATCTGAATTTTAGTGT
CTGTTCGGAGCCCCTCCGCTCCACAACTCTGCCACGGAGCGGAGCGGGCTGCAGTTCAAAATTTCAGAGCGGGGGAATTG
GTGCTCCGCCAGATTCGTGGAGCCGGTGGATTACCAAA-----CAGGCTCTTAGTGTTTGTTTTAGCGATTGTATGGATT
TGGCTGTGTGGCACTTTGTTATTAGAACCCGTATGTTATTTGTGTAAAACATCAAGAGAACGGTCAGCTGCAACATTCGG
ATCCGAGTTAGCTGGCTCCAACGGCCAGAAGCCCCTGATGAACATGAGAGCGTGAGCGTGCCCATGTTCATGAGTGTGCG
TGAGTGATGTTGGCACTGCAGGGCCATGATGGGGGAGTGCATCGCACGGATAACCAACCTGTCAGCGAGCCGTGGACGAC
ATGGGATGCTACTGTAGGAAAATACAGAATACGGGGTTGGGGTTGCAACTGCTAGCTCGAATACATGACATAAATGCGTC
GCTGCAGCATCTCGATGGGATTACTGACGACCAGGATAACGAGCTGCATGGAGCTCGGCCTCCAAACGGCATTTTCGCAA
CCTTCAGGGCTTTGTACTCCACGCTGTATACTGTTATTGAGCTGAATGAAATTTGTCTTGTTCAAAAAAAAGTGAGAGTG
CCACTGCATGGGCGCTCCCTACTGACCATGACTTTTCCTCAGGAAAATATCTTCGCACCTACCGGTTGTCAAA-TTGACA
GCCACCCAACTTTCAACCCCCTTGATGTATTGTAGAGCACCAA----ACGTACTTGCCAGGCGACGATTTATAAGGACTA
GCCCTGTTGCAAATTAGTAGGCGCAGCTCAAGCGTAGCTGATTAACC---------ACCATGGCCCATTCCTGCCACGCC
TACGATCTTGTGCTACGACGGTATCTCTTGGCCCTGCACCACCTCCTCGACTACGTCCGCTTCGTCGCGGCGGTCGTCCT
GGACCGCCTCGGCATCGTCTCGTTCGACGGCGAGATGCTGCCCGGTGAGCCTTGGAGCGAGCTCGTCGACACTGCGCCGA
TGGAGCGCCTCATGGAGGCAGCGTTCTGGCAGCCCAGCTCACCGCCGAAGGTGAATCGTTCGTCTTCGTGGACGGCGCCA
CAGTACAGACGACCGCGGGTTGCGCCGGCGGATGTCGAGGGAGCCGAGGACGACGACGGGTGCGTGGGCATCTGCGCGAT
TTGCTTGGCGGCGCTCGACGTGGGAGGGCAACTGGTCACGGAGTTGTGCAACTGCTCGCATGCGTTCCACGCCGCCTGCA
TCGATTCTTGGATCGGCAGCGGCGAGGC---CGGCACTTGCCCGATGTGCCGCACCCCGACGGTAC---CAACGGCGTGG
TGGAACGGTTGGCGAGAAGTAGTGCCACGCACGTCTTTATCTCCTTGATCGCTGAAGGGCTGAGGAGGACCGAAACATCT
CGATCTCCTCACTGGAGGCAGGGCGACACGCCGCGATGTGTACATGTATAGCATAGTCCCTCCAATGTTTTTCCGTTGTT
TTCTTTTTTACGTCAACAAATGTTTTCCGTTGTTTTCGTTC-TGCATGAACGAATGTTTATGTTTTCCGTTGGATAAAGA
GTGTGGTTTTTCTAAAAATGTACTAACACTGAAAAGGACATAAA---TATTATACGACTTACATA---------------
--------------------------------------------------------------GAACATAAAAAATATACC
ACTGGAAAGGTCTTCCAAGTGGCACAAACGACGGTGGGAGATGGCACGAAGGCATTATTC-TGGGAAGATCGTTGGGTGC
TTGGTTGGCAGGTTCAGGATATAGCTCCACGGATTTACGACAGAATTACGGCCAGAGTAAGGACAACTAGAACAGTTCAC
GAGGGGCTC--AAATGGAGCATGGGCTCGAGACATTGGCCTCGATATAAGCCTTGAGATACTTTTCAGTTTGGTCTTCGG
TTGCACAGATTGAGCTTGACCCACTTAAAAGCGACCAGGTGCGGGGAGGGGAACTTTTGGTCTATGGGGACATGTGCACC
CTATACCGAAAAAAATTTAGTAATTCAACAAAAAGTCAAAAATTACTGAAAATATTTTTGAAATAAACTTGACCTTCTAT
TGTACTCGTGAGAAATGAAATCCACAAAAAAATATCTTTTTGACTTCTTTTCAAAAAAAACAAATTTTTGGCTAAAATAG
TGTGAATAGTGACCTATAATAGCAAATAAATTTTGTCTTTTTTGCTGTGAGGTCAACTTTAGTTTTTTTCTCATCGACAT
TTATATATCAGTGGTGCAAAAGTAAGTCAAGTGTTTTTTCAAAATAGTTCTTACCTATTTTGACTTTTTATGAAAATATT
AAAAAAAAATCCCCATATAGGGTGCATATACAACCAAGAACCAAAGTGTATTTCCTCCAGGTGCGGTGGGAAGGATGGAG
AGTACTCGGCCC
>chr3D_1
TGTAGAATTCAAGGGCACAAGAGCACAACATGCCCTGCCAGAGGGGATGTGCCAAAGGCACCTAGGAAATCTCCGCGCTG
CTCAAAATGTGGGTGACAGGCCACAGGAATAACGCATGTAGCAACCCGCCTAAAGTCTGAGCAAATCTGAATTTTAGTGT
CTGTTCGGAGCCCCTCCGCTCCACAACTCTGCCATGGAGCGGAGCGGGCTGCAGTTCAAAATTTCAGAGCAGGGGAATTG
GTGCTCCGCCAGATTCGTGGAGCCGGTGGATTACCAAG-----CAGGCCCTTAGTGTTTGTTTTAGCGATTGTATGGATT
TGGCTGTGTGGCACTTTGTTATTAGAACCCGTATGTTATTTGTGTAAAACATCAAGAGAACGGTCAGCTGCAATGTTCGG
AT----------TGGCTCCAACGGCCAGAAGCCCCTGATGAACATGAGAGCGTGAGCGTGCCCATGTTCATGAGTGTGCG
TGAGTGATGTTGGTACTGCAGGGCCATGATGGGG-AGTGCATCGCACGGATAACCAACCTGTCAGCGAGCCGTGGACGAC
ATGGGATGCTACTGTAGGAAAATACAGAATACGGGGTTGGTGTTGCAGCTGCTAGCTCGAATACATGACATAAATGCGTC
GCTGCAGCATCTCGATGGGATTACTGACGACCAGGATAGCGAGCTACATGGAGCTCGGCCTCCAAACGGCATTTTCG---
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>chr4D_1
TGTAGAATTCAGGGGCACAAGAGCACAACATGCCCTGCCAGAGGGGATGTGCCAAAGGCACCTAGGAAATCTCCGCGCTG
CTCAAAATGTGGGTGACAGGCCACAGGAATAACGCATGCAGCAACCCGCCTAAAGTCTGAGAAAATCTGAATTTTAGTGC
CTGTTCGGAGCCCCTCCGCTCCACAGCTCTGCCACGGAGCGGAGCGGGCTGCAGTTCAAAATTTCGGAGCAGGGGAATTA
GTGCTCCGCCAGATTCGTGGAGCCGGTGGATTACCATACCAAACAGGCCCTTAGTTTTTGTTTTAGCGATTGTATGGATT
TGGCTGTGTGACACTTTGTTATTAGAACCCGTATGTTATTTGTGTAAAACAT--AGAGAACGGTCATCTGCAACGTTCAG
ATCCCAGTTAGCTGGCTCCAACGGCCAGAAGCCCCTGATGAACATGAGAGCGTGAGCGTGCCCATGTTCATGAGTGTGCG
TGAGTGATGCTGGCACTGCAGGGCCATGATGGGGGAGTGCATCGCATGGCTAACCAACCTGTCAGCGAGCCGTGGACGAC
ATGGGATGCTAATGTAGGAAAATACAGAATATGGGGTTGGGGTTGCAGCTGCTAGCTCGAATACATGACATAAATGCGTC
GCTGCAGCATCTCGATGGGATTACTGACGACCAGGATAGCGAGCTGCATGGAGCTCGGCCTCCAAACGGCATTTTCGCAA
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>chr2B_797
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-CATTGCATGGGCGCTCCCTACTTACCACGACTTTTGCTCAGGAAAATATCTTCGCACCTACCAGTTGCCAAATTTGACA
GCCACCCAACTTTCAACCCCCTTGATGCATTGCAGAGCACCAA----ACGTACTTGCCAGGCGACGATTTATAAGGCCGA
GCCCTGTTGCAAATTAGTAGGCGCAGCTCAAGCGTAGCTGATTAACC---------ACCATGGCCCATTCCTGCCACGGC
TACGATCTTGTGCTGCGACGGTATCTCTTGGCCCTGCACCACCTCCTCGACTGCGTCCGCTTCGTCGCGGCGGTCGTCCT
GGACCGCCTCGGCATCGTCTCGTTCGAAGGCGAGATGCTGCCCGGTGAGCCTTGGAGCGAGCTCGTTGACACTGCGCTGA
TGGAGCGCCTCATGGAGGCAGCGTTCTGGCAGTCCAGCTCGCCGCCGAAGGTGAATCGTTCGTCCTCGTGGACGGCGCCA
CAGTACAGACGACGGCGGGTTGCGCCGGCGGATGTCGAGGGAGCCGAGGACGACGACGGGTGCGTGGGCATCTGCGCCAT
TTGCTTGGCGGCGCTCGACGTGGGAGGGCAACTGGTCACGGAGTTGTGCAACTGCTCGCATGCGTTCCACGGCGCCTGCA
TCGGTTATTGGATCGGCAGCGGCGAGGC---TGGCACTTGCCCGCTGTGCCGCACCCCGACGTTAC---CAACGGCGTGG
TGGAACGGTTGGCGAGAAGTAGTGCCACACACGTCTTTATCTCCTTGATCGCTGAAGGGCTGAGGAGGACCGAAACATCT
CGATCTCCTCACTCAAGGCAGGGCGACACGCCGCGATGTCTACATGTATAGCATAGTTACTCCAATGTTTTTCCGTTGTT
TTCCTTTTTGCGTCAACAAATGTTTTCCGTTATTTTCGTTTTTGCATGAACGA------ATGTTTTCCGTTGGATAAAGA
GTGTGGTTTTTCTAAAAATGTACTAACACTGAAAAGGACATAAAAAATATTATACGACTTACATACTACCTCTGTATCGA
AATAGTTGAGAAAACTTATACTAGTTTGTCCCAACTACAAGTATTTCGATACTGAGGGAGTAGAACATAACAAATATACC
ATTAAAAAGGTCTACCAAGTGGCACAACCGACGGTGGGAGATGGCACGAAGGCATTATCCTTGGGAAGATCATTGGATGC
TTGGTTGGCGGGTTCAGGATATAGCTCCGCGGATTTATGACAGCATTACAGCCAGAGTAAGGACAACTAGAACAGTTCAC
GAGGGGCTCTCAAATGGAGCATGAGCTCGAGACATTGGCCTCGATATTGGCCTTGAGCTACTTTTCAGTTTGGTCTTCAG
TTGCACAGATTGAGCTTGACCCACTTAAAAGAGACCTGGTGCGG------------------------------------
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>chr2A_894
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-------------------CCTTGATGCATTGTAGAGCACCAAACGTACGTACTTGCTAGGCGACGATTTATAAGGCCGA
GCCCTGTTGCAAATTAGTAGGCGCAGCGCAAGCGTAGCTGATCATTAACCACCATGACCATGGCCCATTCCTGCCACGGC
TACGATCTTGTGCTGCTACGGTATCTCTTGGCCCTGCACCACCTCCTCCACTGCGTCCGCTTCGTCGCGGCGGTCGTCCT
GGACCGCCTCGGCATCGCCTCGTTCGAAGGCGAGATGCTGCCCGGTGAGCCTTGGAGCGAGCTCGTCGACACTGCGC---
----------------------------------------------------GAACCGTTCGTCTTCATGGACGGCGCCA
CAGTACAGACGACGGAGGGTTGCGCCGGCGGATGTGGAGGGAGCCGAGGACGACGACGGGAGCGTGGGCATCTGCGCGAT
TTGCTTGGCGGCGCTCGACGTGGGAGGGCAGCCCGTCGCGGAGTTGTGCAACTGCTCGCATGCGTTCCACGCCGCCTGCA
TCGACTCTTGGATCGGCAGCGGCGAGGCCGCCGGCACTTGCCCGTTGTGCCGCACCCCGACGGTACCAACAACGGCGTGG
TGGAACGGTGGCG-------------------------------------------------------------------
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>SNPs
-----------S--------------------------------------------------------------------
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----------------------------------------------------------------------S---------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------S-----
----S---------------------------------------------------------------------------
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-----------------------------------------------S--------------------------------
--------------------------------------S-----------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S-------------------S----S-------S--------------------------S----S-----------
---------------------------S------------------------------------------------S-S-
------------------------------------------------------------------------------S-
--------------S-------------------------------------S---------------------------
---------------------------S-------------------------------------------------S--
--------------------------------S-------S---------------------------------------
-------------S------------------------------------------------------------------
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--------------------------------------------S-----------------------------------
----------------------------S---------------------------------------------------
-------------SS------------------------S-----------------SS---------------------
---S-----S---------------------S--------S------------SSSSSS---------------------
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----------------------------------------------------------------------S---------
-S-SS--------S-------------S------------------------------S------------S----S---
---------S------------------S--------S-----S-----S------------------------------
-----------------------S-----------------------SS--------S--------------------S-
-------------------------------S----S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_725
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-----------------------------------------------------------------ACGGCATTTTCGCAA
CCTTC---------------------------------------------------------------------------
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>reverse_2607
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----------------------------------------------TGTATTTCCTCCAGGTGCGG--------------
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