>input_sequence_76730
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-ATGAGCAAG---AGGCGCGGGGCGACGGAGAGCGCCGGGAACGACCCGGCCGGCGCGCCGGTGCGCCTCCCGGGGTCGC
CGCGGCGCGGCGCGAGCCGGGGCG---------------------------GCGTGTTCGAGTGCAGGACGTGCGGCAGG
CGGTTCCCGACGTACCAGGCGCTGGGCGGGCACCGGGCCAGCCACGGGCGACATCTCCCCAGCGCCAGCGGGCTGC----
-----------GCGACGGCGACGCCCTCGGGCTCCGGCTGCTGGAGCCACGCGGTGGAGAGGCGAGGCCGAGGACGCATG
GGTGCCCCGTCTGCGGCGTGGAGTTCGCTGTCGGGCAGGCGCTCGGCGGGCACATGAAGCGGCACCGTGA---CATGGCC
GACGCCGACGCCGACGCGAACGCGCACGGCACCATGGCGGCAACGTCCGTGAAGGATGACGGCGCTGGAGCCGGCTGCAC
GGCCGAGATCTGCCTGGACTTGAACCTGGCGCAGGCGGAGAACTGCGCAAAGTGCAGGAATGCTAGGGCCAGCGGCGAAG
CCCAGAGACCGCTACTAGGGTGGAATCCGTGA------------------------------------------------
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>chr1A_1_TraesCS1A01G286100
GTCGTCCTCGACGACAGCGACGACGACGACGCGCCGCCACCGCCTGTCCGTCATGGAGACGCGGGACAGGGGTCCAGCAT
TGGCGGCCGCGCCATCAAGAAGGAGAAGGCCGCCGACGACGAGGAGGACGGCGGTGACGTCGGCGACTTCGCCGCGCTGA
TCGAGTTCTTCACCTCATAGATTAGTTTTTTTAATAATTTATGTAAAACGCCGAACATGTTTAATATGAATATCAAGTTT
GCCGAATTTTAGCCAAACTTTACTGAACTTCATCGAATTTAGCTTTTTTTTAATAAAAAAATACGTCCGGAACGACCCTG
TGGCGAGCGGCTGGGAACCCGCTCGCCTCCGCGCCGATTTAAGCGCCGGCTCGCCCCGAGGGCGCGTAAAATCGCCGCCT
GGGGTGCCAACGGCTGAAGATGCTCTAAGCCAGCAAGAGCCAAAGCTGCAGGTTGGAGTACCAATCATCGGTTAGTG---
--------TCAGCCACCAACCTAGCAACGTGGAAAGCACTGGCATG-----CATGCACGAACGCCGGCCAGGCTAAAGAA
ACCTACCGCGGCGCTCCGATCCGGCGTCCGGACCTCGAGAAACGATTGATCCTACTGGAAATCGATTGATCCCGGAGAAA
CGACCGCGCGATCGGACGGCGGCAGGTACACGTCCGGTCGCCG----CAGACCGCACCACCTACCATTAGCGCCCGCCTT
TCGACCTCAGACCGCAGCTACGTGCCACGTACTGGCTACGTCTACTGTGCCAATTAATCCTTTCAGACCACGACACGGAA
ATGCATACCGACATCTAGAAACCCAAGAAATTCTCATTCTGCTCCAGGTCTCCAGTGCACTCCTTGTCCTGCAGGAGGAG
CACAGTAGTCTGGCTAGCTAGCTGTAAACACAGGCAAATTCGAGGACCCTCGGATCCATGTACGCTGCGCTATATATGGC
CGTCCGCACTGCATGCCTCCGGA---------------------GCACGTACCGTTCGTTCGCCGTGGCAGCGACATCGA
CATGAGCAAG---AGGCGCGGGGCGACGGAGAGCGCCGGGAACGACCCGGCCGGCGCGCCGGTGCGCCTCCCGGGGTCGC
CGCGGCGCGGCGCGAGCCGGGGCG---------------------------GCGTGTTCGAGTGCAGGACGTGCGGCAGG
CGGTTCCCGACGTACCAGGCGCTGGGCGGGCACCGGGCCAGCCACGGGCGACATCTCCCCAGCGCCAGCGGGCTGC----
-----------GCGACGGCGACGCCCTCGGGCTCCGGCTGCTGGAGCCACGCGGTGGAGAGGCGAGGCCGAGGACGCATG
GGTGCCCCGTCTGCGGCGTGGAGTTCGCTGTCGGGCAGGCGCTCGGCGGGCACATGAAGCGGCACCGTGA---CATGGCC
GACGCCGACGCCGACGCGAACGCGCACGGCACCATGGCGGCAACGTCCGTGAAGGATGACGGCGCTGGAGCCGGCTGCAC
GGCCGAGATCTGCCTGGACTTGAACCTGGCGCAGGCGGAGAACTGCGCAAAGTGCAGGAATGCTAGGGCCAGCGGCGAAG
CCCAGAGACCGCTACTAGGGTGGAATCCGTGAATGTGTCACATAATACCATGGCAAAAAAAAAGGATTGATGTTTCAACA
AATTCTGAATTTTATTTTGTGAATGTTCCGTGACATATGTCTACTATACCCAAATATTTCAGTTCCAAATCCAAATGCCT
----------------------------AAAAATTCCAAATCATGTACTCACTCTGTTTCGAATTACTTGTCGCAGGTAT
GGATGTATCTAGATATATTTAGTTCTAGTTATATCCATTTCTGCGACGAGTAATTTGGAACGGAGTTAGTACATCTCTCA
CCCGTTACTGTTCTGCTCTCTTTGTCGAACCGTGCTTTTTATT---AGTGTTGCTATTTCTCGCTTGTTTGAATTGCAAT
TTTAGTACTCCCTTTGTTCATTTTTACAAGGCTTTGTAGATGTTTTAGACAGTGTACAAAACAACATAATTTCACTTGTC
TGAAATGACTTATAAAAGTAAACGGAGGAAGTACTTATTTTAAGTTGCAGAACAGAAAAATATACCACTGCGACTAATAC
ATAGTACTCCCTCCATTAGAACTAACTGTCGTTCAAATGAGTGAATCTACACACTTCGGAAGCAACGGTCGTTCAAATGA
GTGAATCTGCACACTGAAACTTGTCTAGATACACGCATTTCAGTGACAGTTAAATCCGAAAGGAGGTACGAGATAACACA
GTTGATTGTTGATCAGAAGGCTACAGGAATTGAAATTTATTAAAATTCCAGCCAACTACTCCCTCCGTTCCCAAATATAA
GTCCTTTTAGAGATTTCAACAAATAACTAAATACGGAGCAAAATGAGTGAATCTGCACTCTAAAATATGTCTATATACAT
CCATATGTTGTAGTCCATTTGAAATCTCTAAAAAGACTTATATTTAGGAACAGAGGGAGCAGTAAAAAGGTAAGAGGTCT
CATTCTCACGTCAACTACTTGCATACATGCAAGAACAGCATAAGAGCTCACACCACAGCATCACAACAAGTTATTCCATG
CATATTGATTGCTCGGAAAGAAA
>chr1B_425
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------------------------CTAAGCCAGCAAGAGCCAGAGCTGCAGGTTGGC--ACCAATCATCGGTTAGTA---
--------TCAGCCACCAGCCCAGCAACGTGGAAAGCACTGACATGACATGCATGCGCGAACGCCGGTCAGGCTAAAGAA
ACCTACCGCGGCGCTCCGG-CCGGCGCCGGGACGTCGC------------------GGAAATCGATTGATCCCGGAGGAA
CGACCGCACGATCGGACGGCGGCCGGTACACGTCCGGTCGCCGGATGCAGACCGCACCACCTACCATTAGCGCCCGCCTT
TCGACCTCAAGCGGCAGCTACGTGCCACGTACTGCGTGTGTCCACTGTGCCAATAAATCCTTCCAGACCACGACACGGAA
ATGCATACCGACATCTAGAAACCCACGAAATTCTCGTTCTGCTCCAGGTCTCGGGTGCATTCCTTGACCTGTGGGACGAC
AGTAGT-------CTGG----------ACACAGGCGAATTCGAGGGGCATCGACTCCATGTACGCTGCGCTATATATGGG
CGTCTGCACTGCATGCCTGTGGA---------------------GCACGTACCCTTCGTTCGCCGTGGCAGCGACATCGA
CATGAGCAAGAGAAGGCACGGGGCGACGGAGAGCGCCGAGGACGACGCGGTCGGCGCGCCGATGCGCCTCCCGGAGTCGC
CGCGGC---------------------------------------------GCGTGTTCGAGTGCAGGACGTGCCGCAGG
CGGTTCCCGACGTACCAGGCGCTGGGCGGGCACCGGGCCAGCCACGGGCGGCATCATCCCAGCGTCAGCAGGCCGCGCGC
GCACGCGCCTGGCGACGGCGTCGCCCTCGAGATCCGGCTGCCGGAGCCACGCGGTGGAGAGGCGAGGCCGAGGACGCACG
GGTGCCCCGTCTGCGGCGTGGAGTTCGCCGTCGGGCAGGCGCTCGGCGGGCACATGAAGCGGCACCGTGC---CATGGCC
GACGCCGACGC------GAACGCGAACGGCACCAGGGCGGCAACGTCCGTGAAGGATGACGGCGCTGGAGCCGGCTGCAC
GGCCGAGATCTGCCTGGGCTTGAACCTGGCGCAGGCGGAGAACTGCGCCAGGTGCAGGAACGCTA---------------
--------------CTAGGGGTGAATCCGTGAATGGCACATAAATCAAATT---------------TTGATGTTTCAACA
AAATCCGAATTTTATTT-GTGAATGTTCCATGACATTCGTCTACTGCACCTAAATATTTCAATTCCAATTCCAAATGCCT
----------------------------A---------------------------------------------------
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-------CTTTTATGCTGTCTTTGTTAAGCCGTGCTTTTTATTCTCAGCGTTGGTATTTCTCGGTTGCCTGGAATGCAAT
TTTAGTG-------------------------------------------------------------------------
---------------------------------CTCACTTTAACTTCCAGGCCAGACCAATATGCAAT-TACCATTTGAG
AAATCAACAAATTGTAGTAT------------------------------------------------------------
--------------------------------------------------------------CAGATAAGACAGAACACC
GTTGATTGTTGTTCAGAATTCATAAGGCTACAAAAAGTGAGCGAGAC---------------------------------
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-----------CAACTACTTGTATACATGCAAGAACAGCATAAGAGCTCACACCACAGCATCACAACAAGTTATTCCATG
CATATTGATTGCTCGGAAAGAA-
>chr1D_426
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-------------------------TAAGCCAGCAAGAGCCAGAGCTGCAGGTTGGC--ACCAATCATCGGTTAGAAAAT
GAGGCGATTCAGCCACCAACCCAGCAACGTGGAAAGCACTGACATA-----CATGCACGAACGCCGGTCAGGCTAAAGAA
ACCTACCGCGGCGCTCCGG-CCGGCGTCCGGACGTCGC------------------GGAAATCGATTGATCCCGGAGAAA
CGACCGCGCGATCGGACGGCGGCCGGTACACGTCCGGTCGCCGGATGCAGACCGCACCACCTACCATTAGCGCCCGCCTT
TCGACCTCAGACGGCAGCTACGTGCCACGTACTGCGTGTGTCCACTGTGCCAATTAATCCTTTCAGACCACGGCATGGAA
ATGCATACCGACATCTAGAAACCCACGAAATTCTCATTCTGCTCCAGGTCTCCAGTGCACTCCTTGACCTGTAGGACGAC
ACTAAT-------CTGGCTAGCTGTGGACACAGGCGAATTCGGGGAGCCTCCGTGTATGCT----TGCGCTATATATGGC
CGTCTACACTGCATGCCTCCAGGACAGAGCTGGTCAGCTGGATTGCACGTACAATTCGTTCGCCGTGGCAGCGATATAGA
AATGAGCGAGAGGCACAAGCTGCTCGGGGAGAGG---GAGGACGACGCGGTCGGCGCGCCGACGCGCCGATGGGAGTCGC
CGCGGCGAGGCGCGAGCGGGGAGATGGCGCCGGCTCACAGGCCCCGGGGCCGCGTGTTCGAGTGCAGGACGTGCGGCAGG
CGGTTCCCGACGTACCAGGCGCTGGGCGGCCACCGGGCCAGCCACGGGCGGCATCTTCCCAGTGCCAGCAGGCTGC----
-----------GCGACGGCGACGCCCTCGGGCTCCGGCTGCTGGAGCCACGCGGTGAAGAGGCGAGGCCGAGAACGCACG
GGTGCCCCGTCTGCGGCGTGGAGTTCGCCGTCGGGCAGGCGCTCGGCGGGCACATGAAGCGGCACCGTGCTGCCATGGCC
GACGCCGACGC------GAACGCGCGCGGCACCATGGCGGCAACGTCCGTGAAGGATGACGGCGCTGGAGCAGAGTGCAC
GCCCGAGATCTGCCTGGACTTAAACCTGGCGCAGGCGGAGAAGTGCGCGAAGTGCAGGAACGCTA---------------
------------------------------------CACATAAATCAAATT---------------CCGATGTTTCAACA
AAATCTGAATTTTATTT-GTGAATGTTCCATGACATTCGCCTACTGCACCTAAATATTTCAATTCCAATTCCGAATGCCT
ACAAATTTCAAATCACGTGATTGCAGTTA---------------------------------------------------
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-------CTTTTCTGATGTCTTTGTTACGCTGTGCTTTTTATTCTCAGTGTTGGTATTTCTCGGTTGCCTGGAATGCAAT
TTTAGTG-------------------------------------------------------------------------
---------------------------------CTCACTTTAAGTTGCAGATCAGACCAATATGCAATCTACCATATGAG
AGATCAACACATGGTAGTAT------------------------------------------------------------
--------------------------------------------------------------GAGACAAGACAGAACACC
GTTGATTGTTGTTCAGAATTCAGAAGGCTACAAAAAGTGAGCGAGAC---------------------------------
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-----------CAACTACCTGTATACATGCAAGAACAGCACAAGAGCTCACACCACAGCATCACAACAAGTTATTCCATG
CATATCGATTGCTCGGAAAGAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS------------------S-------------SSS-----------------S---
---------------------S-------------------S-------------------------S------------
------------------SS-------------S---SSSSSSSSSSSSSSSSSSS------------------------
-----------------------S--------------------------------------------------------
------------S---------------------SS-SS---S-------------------------------------
-------------------------S----------------------------------------S----S----S--S
SSS---SSSSSSS--S---------SS--------S----------S------S--------------------------
----S------------------------------------------------S--------------------------
-----------------S--------------------S-S-----S---S----------S------------S-----
-------S---------S---SSS--------------------------------------------------------
--------------------------------------------------S-----S------------S----------
------------------------------------------------------------------------------S-
----------------------------S----------------------------------------S----------
-----------SSSSSS---------------------------------------------------------------
------------------------------------------------S-----------S----SSSSSSSSSSSSSSS
SSSSSSSSSSSSSS------SS-------------SSS--S-S-SS-SSS-SSSSSSSSSSSSSSS--------------
--S--------------S-----------S------SS-------SS---S----------S------S-----------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--S-------S-------SS-S------------------------S---------S---SS--S-S------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S-------------S----SS-----S-S-SSSSSSS--SS-S
-S-SS-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S--S-S-----S
-----------S------SS-SSS---SSSSS---SS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------S----------------------------------------------------------
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>forward_113
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-------------ATCAAGAAGGAGAAGGCCGC-----------------------------------------------
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>reverse_1598
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-----------------------------------------------------------------------------AAG
CCCAGAGACCGCTACTA---------------------------------------------------------------
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>forward_890
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----------------------------------------------------------------------GCAGGAGGAG
CACAGTAGTC----------------------------------------------------------------------
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>reverse_2371
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--------------------------------------------------GCCAACTACTCCCTCCGTTC----------
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