>input_sequence_76727
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---------TTATAAAAGGAGCGCCGTGCGGTCTCGTTCCCGGCGAACAGCGACAGAGTGAGGCGTTCAGCTAATAGACT
CCACATAC--AGATCGAGATGGTGCACAGGCTTACACACGA---AGGTGAAGAGGCTGCCCTCACCATGGAGGGGAGGAA
GAGGGAGTCGACGGCGACAAGGAGGAGGAGAAGGAGGCAAGGTGGCGGAGACGCCATCGCGGCGATCAAGAGGAGGATGC
TGCGTTGCAGCGAGGCCGGAGAACGGGTGAGGTTCAAGCGGAGCTACTTGGCAGGCGCAGGCGGCGGCGAGCAGGGCGAC
GGCGCCTCCGCCGTCTTCTTCTACCTGGCCTGCATCGCCTGTGCGCCGGCTTA----GTTCATCAGCTCCTCTTTCCTGT
GTTC--TACACAGGTTGTAATTGCCTGATTGGAATCATATATAGTCCGCGTTAGCTCACTACTCCGTTGTCAGTGGTAGG
CTCTCAGGAATCAAGATGAGATGCTCTTGTCGTAAATATTTGAGTTATTTCTAAGTTTTCTCTCTCAATTTTT-ACTCCT
CCGTA---------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G213900
CTCGTGACGTCCTGCCGCGCCCCTCGCGGTCGAAGCCGCCACCCGAGCCCGCCCCCGCACCACAGGGCCATAGGCGCCGC
ACGTCGCTGCGCCAGATCCGCGCCCGGCCGCGCCCGCCCACGGCACCACGGCGCCAGGAAGCAGCAGCACCTGGGAGACG
CCACTCTGCGCCGACCGGCCGGCCACCATCTCCACGCCGACGGGCCAAACGCCGCCGCCCGACCCGAGCTCGGCCCTCAG
ATCCACCGCGAGTCAACGCCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGACCCATCTGGTCGCAGCAGCAGCAGGCGTATTACATGAGCTTAACAATATCCCATCTTT
AATTCTCTCAAGGTCAACACAGTGTTAGTTTAACTGTCAGCTTCCCTGCAACGCTTGGATCCACATGTAATGGATTCAGG
ACGGCTTGCCTCGATAACTGAAGCCCACCACAGCGTATTCAAATCGGTGAAGCGTACACGCGCATCATTTCAGGATGAAC
AGATCCAATGGATCCCAGCAGATGGA-CGGAATTGGCACAAATTCACGCGTCAAAACCAGATGCACGCACGCAAGCACCG
AGCAGG-----GCAAGACAAACGCAGGAGCATTCTGATCGAGTTCCCGTCAATTTGCACTCATCTCAAGT----------
---AATCCATGGAGATAAGCTTA-GACCAATCAACGGGAATCACTGGGTGTGTTACATGTCACG--------CACGTAA-
----------------AAAAATGGATGCACGCTCGTTTAAAAAAAAT----ATGGATGCACGACGCGACGCGACCCTCTG
GCCGCCCGCTTATAAAAGGAGCGCCGTGCGGTCTCGTTCCCGGCGAACAGCGACAGAGTGAGGCGTTCAGCTAATAGACT
CCACATAC--AGATCGAGATGGTGCACAGGCTTACACACGA---AGGTGAAGAGGCTGCCCTCACCATGGAGGGGAGGAA
GAGGGAGTCGACGGCGACAAGGAGGAGGAGAAGGAGGCAAGGTGGCGGAGACGCCATCGCGGCGATCAAGAGGAGGATGC
TGCGTTGCAGCGAGGCCGGAGAACGGGTGAGGTTCAAGCGGAGCTACTTGGCAGGCGCAGGCGGCGGCGAGCAGGGCGAC
GGCGCCTCCGCCGTCTTCTTCTACCTGGCCTGCATCGCCTGTGCGCCGGCTTA----GTTCATCAGCTCCTCTTTCCTGT
GTTC--TACACAGGTTGTAATTGCCTGATTGGAATCATATATAGTCCGCGTTAGCTCACTACTCCGTTGTCAGTGGTAGG
CTCTCAGGAATCAAGATGAGATGCTCTTGTCGTAAATATTTGAGTTATTTCTAAGTTTTCTCTCTCAATTTTT-ACTCCT
CCGTAGTAAAATTTTAAAATAGGGCAAAGAAGGATTAAGCTTACATATAGTAAGATTCAACAGGTAAACC----------
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-----GCACTACAACTCTGATGCCATAATATCAAGTCGTCTAGCAAAATTGTACAGAGCCAAGTGACTTCAAAGCTCTGG
TGTTATCACCTCCGACATCTTAAACCACCGAGAAAATCTGACC--CTCTCTGGAATCTTGCAAACTGCCAGTTATAATTA
AGGATTTGCAGCATTGATGCGACGCCTCTTTCGCCTCTCTCTCGAATCAAGGCCTCTGTTATAACCTACTTTCTTCATAG
CTCTGCCCTCGAGGCCAATGTCCACTTTTGGAGGGTTCCTAAAGCAGAATGATGCAGCTACGTCCTGCCAAATTATAGTG
AACTGGGCATTAGTCTTTTTTTTTCCGTCTTTTTGTCAAGTCCCAAACTCCAATTTGGGGGTGATGAAAATAATATCAGC
AAGTACTTCCGAGAGGTGCTCACCTAAAAATAAGAAAAAGACAAGTGTGCTTC---TACATGCTAGGTAGAACAACTGAA
ATTGTAAAACGGCCAAAT-GAAAAA-ATACAGATCCCGCAAAAAAGTTCGACAAGCATTTTACCTTCAAACTGAGACTAT
GAACCTTAAAGATGTCTTTCATTGCGTGTGAGTTGTATGCTAGAATGTAGGATCTGTAGGCTTGTTGAGCTGACTGGTGT
AGGAAGTAGTTCTCGCCAATGATTTTCTCCTGCTCAACAAATTGAGTTGTAACTTGTTATTAACATATTAGATTAGAAAA
AAGTGGATTGGAACACTCAAGAGTGGCAAAAGATACACTTACAAAATGTGCTTGCAGATTTGGTACATTCTTGTTGTTGA
ACTGGTGTTCGGTGAGATGAATGTTGGCTGCCTGCAGGCACACTAAATATGTGATTTCACTAACTTTAGAGGGAAAGAAA
TGCCATATTATCTCGGTGCAGAATTGATTACCCTCAAGGAGATAAGAAACTCTAATTCTTGGGGCAG
>chr7A_503
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----------------------CCCATCTGGTCGCAGCAGCAGCAAGCGTATTACGTGAGCTTAACAATATCCCATCTTT
AATTCTCTCGAGGTCAACACTGTGCTAGCTTAACTGTCAGCTTCCCACATGTAAA-------------AATGGATTCAGG
ACGGCTTGCCTCGATAACTGAAGCCCACCACAGCGTATTCAAATCGGTGAAGCGTACACGCGCATCATTTCAGGATGAAC
AGATCCAATGGATCCCAGCAGATGGATCGGAATTGGCACAAATTCACGTGTCAAAACCAGATGCACGCACGCAAGCGCCG
AGCAGGCATTGGCGAGACAAACGCAGAAGCATTCTGATCGAGTTCCCGACAACTTGCACTCAAAGGCCGGCTGTTCACTC
ATGAATCCATGAAGATAAGCTTAAGACCAATTTACGGGAATCACTGGGAGTGTTACATGTCACGTGTCTGGCCAAGATGC
AATGCACACAGCGGCCAAAAACGGATGCACGCA--------------------------------CGACGCGACCCTCTG
GCCGCCCGCTTATAAAAGGAGCGCCTTGCGGTCTCGTTCCCGGCGAACAGCGACAGAGTGAGGCGCTCAGCAAATAGACT
CCACGCACGTAGATCGAGATGGTGCATAGGCTTACACACGACGAAGGTGACGAGGCTGCCGCCACCACGGAGGGGACCAA
GAGGGAGACGGCGGCGACGAGGAGGAGGACAAGGAGGCAAGGTGGTGGAGACGCCATCGCGGCGATCAAGAGGAGGATGC
TGCGGTGCAGCGAGGCCGGAGAACGGGGGAGATTCAAGCGGAGCTACTTGGCAGGCGCAGGCGGCGGCGAGCAGGGCGAC
GGCGCCTCCGCCGTCTTCTTCTACCTGGCCTGCATCGCCTGCGCCCCCGC----TTAGTTCATCAGCTCCTCTTACCTAT
GTTGTATACACAGGTTGTAATCGCCTGACTGGAATCACACATAGTCCGCGTCAGCTCACCCCTGCTTTGTCAGTGGTAGG
CTC--AGGAATCA-----AGATGCTGTTGTTGTAAATATTTCTAAGTTG----AGTTTTCTCCCTCAATTTTGGACTCCT
CCGTAGTAAAATTAG----TAGAGCAAAGAAGGATTAAGCTTACATA--GTAAGATTCAACAGGTAAACC----------
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-----GCACTACAACTCTGATGCCATAATATCAAGCCGTCTAGCAAAATTGTACAGAGCCAAGTGAGTTCAAAGCTCTGC
TGTTATCACCTCCGACATCTTAAACCACCGCGAAAATCTGACC--CTCTCTGGAATCTTGCAAATTGTCAGTTATAATTA
AGGATCTGCAGCACTGATGCGACGCCTCTTTCGCCTCTCTCTCGAATCAACGCCCCTGTTATAACCTACTTTCTTCATAG
CTCTGCCCTCCAGGCCAATATCCACTTTTGGAGGGTTCCTAAAGCAGAATGATGCAGCTACGTCCTGCCAAATTATAATG
AACTGGACATTAGTCTTTTTCTTGTCT-TTTTCTGTCAAGTCCCAAACTCCAACTTGGGGGTGATGAAAATAATATCAGC
AAGTACTTCCGAGAGATGCTTACCAAAAAATAAGAAAAAGACAAGTGTGCTTC---TACATGCTAGGTAGAACAATTGAA
ATTGTAAAACGGCCAAAT-GAAAAATATATAGACCCCGCAAAAAAGATCGACAAGCATTTTACCTTCAAACTGAGACCAT
GAACATTAAAGATGTCTTTCATGGTGTGTGAGTTGTATGCTAGAATGTAGGATCTGTAGGCTTGTTGAGCTGACTGATGC
AGGAAGTAGTTCTCGCCAACGATTTTCTCCTGCTCAACAAATTGAGTTGTAACTTGTTATTAACATGTGAG------AAA
AAGTGGATTGGAACACTCAAGTGTGGTAAAAGATACACTTACAAAATGTGCTTGCAGATTTGGCACATTCTTGTTGTTAA
ACTGGTGTTCTGTGAGATGAATGTTGGCTGCCTGCAGGCACACTAAATATGTGATTTCGCTAACTTCAGAGGGGAAGAAA
TGCCATATTATCTCGGTGCAGAATTGATTACCCTCAGGGAGATAAGGAACTCTAATTCTTGGGGCAG
>chr7D_505
CATCTGGTAGCA--------------------------------------------------------------------
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---------------------------------GCAGCAGCAGCAGGCGTATTACGTGAGCTTAACAATATCCCATCTTT
AATTCTCTCAAGGTCAACACAGTGCAAGCTTAACTGTCAGCTTCCCCGCAACGCTTGGATCCACATGTAATGGATTCAGG
ACGGCTTGCCTCGATAACTGAAGCCCACCACAGCGTATTCAAATCGGTGAAGCGTACACGCGCATCGTTTCAGGATGAAC
AGATCCAATGGATCCCAGCAGATGGATCGGAATTGGCACAAATTCACGCGTCAAAACCAGATGCACGCACGCAAGCACCG
AGCAGG-----GCAAGACAAACGCAGGAGCATTCTGAT--------CGTCAATTTGCACTCATCTCAAGT----------
---AATCCATGGAGATAAGCTTA-GACCAATCAACGGGAATCACTGGGTGTGTTACACGTCACGCTGTCACGCACGTAA-
----------------AAAAATGGATGCACGCTCGTTTAAAAAAAAAAGAAATGGATGCACGACGCGACGCGACCCTCTG
GCCGCCCGCTTATAAAAGGAGCGCCGTGCGGTCTCGTTCCCGGCGAACAGCAACAGAGTGAGGCGCTCACCAAATAGACT
TCACACAC--AGATCGAGATGGTGCACAGGCTTACACACGACGAAGGTGACGAGGCTGCCGCCACCACGGAGGGGAGGAA
GAGGGAGACGACGGCGACAAGGAGGAGG---AGGAGGCAAGGTGGCGGAGACGCCATCGCGGCGATCAAGAGGAGGATGC
TGCGGTGCAGCGAGGCCGGAGAACGGGTGAGGTTCAAGCGGAGCTACTTGGCAGGCGCGGGCGGCGGCGAGCAGGGCGAC
GGCGCCTCCGCCGTCTTCTTCTACCTGGCCTGCATCGCCTGTGCGCCGGCTTAATTAGTTCATCAGCTCCTCTTTCCTGT
GTTC--TACACAGGTTGTAATTGCCTGATTGGAATCATATATAGTCCGCGTTAGCTCACTACTCCGTTGTCAGTGGTAGG
CTCTCAGGAATCAAGATGAGATGCTCTGGTCGTAAATATTTCAGTTATTTCTAAGTTTTCTCTCTCAATTTTT-ACTCCT
CCGTAGTAAAATTTGAAAATAGGGCAAAGAAGGATTAAGCTTACATATACTCCCTCCGTTCCTAAATACTTCTTTCTAGG
CATTTCAACAAGTGACTACATACGGAGTAAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATCCGTATGTGAT
AGTCATTTGAAATGCCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTAGTAAGCACTACAACGAGTCGCAAAAAAAAAA
AGTAAGCACTACAACTCTGATGCCATAATATCAAGTCGTCTAGCAAAATTGTACAGAGCCAAGTGACTTCAAAGCTCTGG
TTTTATCACCTCCGATATCTTAAACCACCGAGAAAATCTGACCCTCTCTCTGGAATCTTGCAAACTGCCGGTTGTAATTA
AGGATTTGCAGCATTGATGCGACGCCTCGTTCGCCTCTCTCTCGAATCAGGGCCTCTGTTATAACCTACTTTCTTCATAG
CTCTGCCCTCCAGGCCAATATCCACTTTTGGAGGGTTCCTAAAGCAGAATGATGCAGCTACGTCCTGCCAAATTATAGTG
AATTTGACATTAGTCTCCTTTTTTCGTCTTTTTTGTCAAGTCCCAAACTCCAATTTGGGGGTGATGAAAATAATATCAGC
AAGTACTTCCGAGAGGTGCTCACCGAAAAATAAGAAAAAGACAAGTGTGCTTCTAGTACATGCTAGGTAGAACAATTGAA
ATTGTAAAACAGCCAAATGAAAAAA-ATACAGATCCCGCAAAAAAGTTCGACAAGCATTTTACCTTCAAACTGAGACTAT
GAACATTAAAGATGTCTTTCATGGCGTGTGAGTTGTATGCTAGAATGTAGGATCTGTAGGCTTGTTGAGCTGACTGGTGT
AGGAAGTAGTTCTCGCCAACGATTTTCTCCTGCTCAACAAATTGAGTTGTAACTTGTTATTAACATATT--ATTAGAGAA
AAGTGGATAGGAACACTCAAGAGTGGTAAAAGATACACTTACAAAATGTGCTTGCAGATTTGGCACATTCTTGTTGTTAA
ACTGGTGTTCGGTGAGATGAATGTTGGCTGCCTGCAGGCACACTAAATATGTGATTTCGCTAACTTTAGAGGGAAAGAAA
TGCCATATTATCTCGGTGCAGAATTGATTACCCTCAGGGAGATAAGAAACTCTAATTCTTGGGGCAG
>chr1B_1996
TATCCGC-------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
AAGTACTTCTGAGAGATGCTAACCAAAACATT--AAGAAGACAAGTGTGCCTC---TACATGCTAGGTAGAACAATTGAA
ATTGTAAAATAGCTAAAT-AAAAAA-ATACAGATCCCAT-AAAAAGTTCGACAAGCATTTTACCTTCAAACTGAGACCAT
GAACATTGACAATGTCTTTCATGGTGCATCAGTTGTATGCTAGAATTTAGGATCTGTAGGCTTGTTTAGCTGACTGGTGG
AGGAAGTAGTTCTCGCCAATGATTTTCTTCTGCTTAGTAAATTGAGTTGTAACTTGTTATTAACATATGAG------AAA
--GTGGATTGGAACACTCAATTGTGGTAAAAGATAAACTTACAAAATGTGCTTGCAGATTTGGCACATTCTTGTTGTTAA
ACTCGTGTTCTATGA-ATGAATGTTGGATGCCTACAGGCACATTAAATATATGATTACGCTAACTTCGGATGGAAAGAAT
TGCCATATAATCTCGGTGCAGAATTGATCACCCTCAAGGTTATAAGAGACTCTAATTCTTGGGGCAG
>SNPs
-SSS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------------------------------S------------------------
------------------------S---S-----------------S---------------------------------
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----------------------------------------------S---------------------------------
-----------------------------------------------------------------S-----S--------
-----S--------------------------------------------S---------SS-----S------------
-------S---------------------S--------------------------------------------------
----S---------------------------------------------------------------------------
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-----------------------------------------S--------------------------------------
--------------S-----------------------------------------------------------------
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----------S--------S------------------------------------------------------------
------S-------------------SSS---------------------------------------------------
------------------------S--------------------------------------------------S----
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----S-----------------S---------------------------------------------------------
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--------------------------S------------------------------------S--------------S-
----------------------------------------------------------S---------------------
-------------------------------------------------------------------
>forward_254
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---------------------------------------------------------------------------CTCAG
ATCCACCGCGAGTC------------------------------------------------------------------
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>reverse_1181
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------------------------------------------------------------CTCACCATGGAGGGGAGGAA
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>forward_257
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-----------------------------------------------------------------------------CAG
ATCCACCGCGAGTCAAC---------------------------------------------------------------
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>reverse_1182
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-------------------------------------------------------------TCACCATGGAGGGGAGGAA
G-------------------------------------------------------------------------------
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>forward_258
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ATCCACCGCGAGTCAACG--------------------------------------------------------------
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>reverse_1188
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-------------------------------------------------------------------TGGAGGGGAGGAA
GAGGGA--------------------------------------------------------------------------
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>forward_1181
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------------------------------------------GAAGGTGAAGAGGCTGCCC-------------------
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>reverse_2423
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----------------------TGCGTGTGAGTTGTATGCTAGA------------------------------------
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