>input_sequence_76724
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------ATGGCCAGGAACTCCCCGAGCGTCGGCGGCATCAAGCGGAGCTCCTCCGCGAGACGAACATCCTCGTCCTCGGC
AATGTCGGCCCAGCGCAGGCTGCGCGGCACCCAGGCCGGAGGAGCAGAGGACAGGGAAGCCGGATCCGTTGTCCGCCCGG
CCACCACGGAGTCCGCGGAGGCGGACG-----------ACCATCAGGTCGCCGTGTATCCGCCTTGGCTACGTGCATTCA
GGATTCCAGGTCTGGTGGTTCGGTATG-------------------TGCTTCTCGGTTCTTGCTGACTCCGCCGCTGTCG
CATAGGGCAGGCAGGCAGGGAGCACTTCACTCCACGGCGGTTGAAACCATGAGAGAGACCACGGCTGCTTGTGTGCTTCA
CCGGCATTGTAAATCAACAGATCAACTTCAAGGAATCAAGGTACGGAACTGCTGTATATAGAAGTCAAATTCCCTTGAAG
TAATAATT---TAATTTACTAATTTGACAAGGCATGATTATAATTTAGAAATCTAATGTCGCTCCTCCTTTAATGTTCCA
ATGATTGAAGGATGGAGAGGTAG---------------------------------------------------------
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>chr5A_1_TraesCS5A01G285100
ACCAAGAAATATCGTTGAACTTGTATGCAACATCAAGTCAAAAGTATGCAACAACAACACAAAAACGACTTGGAACATGA
ATGCAACATTTACAACAAACTCCAAAGTCATCACAACTTGTGACTTCATGAGCCTT-CAAGCTCTCCCGCTTGACGGAGA
GCCAAGTCTGGCGACGGTTCATGACCAAGCGAACTATCAACATTCGTCTAGGTCCATGGTTGTAGTGAGGTTGATGGAGA
TAGTTCCGACAATGATTTCCT-CCCTTTTGATAAAGTATCAAAAAGGACTCTAGATTGGAACCCCTCAGAACGCGTGGTG
GCGGGGGCAAAAAA--TTCCTCGATAGTTATTTCCCAGGGGTTCGAGAGATTATAAAGGTGGGGGCTTTGAGGGACAATG
GTGCATAGTGCTAGGGAG---AAGTGGTCCCACACGACCATGCCCTGAGACACGATCCAAGG-CGCGTGGAGCCCACATG
GCTCCCTTGATTGGCCTCCGATGTCTTTCTTCGTTCTGATGTGAAAATTCCAAAAGCATGCAGAAAAAA-TACCAACTTC
CTGGTTAGCGTCACGAGTAAGCTCCTTCTCAAGATGGCTTAGGGG---------AGGCCCAACAGACCTCAGCCCTGCCA
CGTACATGCGGGCATCAAGA---TACCTGGCCATGGGCAACCCAGCCCGGACG-------------------------GC
CCGACCCAACCTGGCCTGATCTTGCCCGCCGGCTGAGTCTGGGCCCGTCATATTTGTGATTTATTGAAGAGGCCCGACA-
-----------GGCTTTCACGTTGACGGGCCGGGCTTGGGAGTGGATTTTAGGCCCGACGGCCGGGCCAGGCCAGGCTCG
GGCCTAGGTTTTCTTCGTTGGGCTTTGTCTGGCCCGGCCTGGCCCGAGGGATGGACAGG---------------------
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-----------------------------------------------CTTAAACGGTCCAGGCAGGACACGGCCCACCCA
CCGGCGGCAGGCGCACCCGTGATGGCGCCAATCCCGGAGCTTGGCAGCTTCCCTTTCTGGCCCTCCGCGGCCGGAGGCGC
GGCGCCATGGCCAGGAACTCCCCGAGCGTCGGCGGCATCAAGCGGAGCTCCTCCGCGAGACGAACATCCTCGTCCTCGGC
AATGTCGGCCCAGCGCAGGCTGCGCGGCACCCAGGCCGGAGGAGCAGAGGACAGGGAAGCCGGATCCGTTGTCCGCCCGG
CCACCACGGAGTCCGCGGAGGCGGACG-----------ACCATCAGGTCGCCGTGTATCCGCCTTGGCTACGTGCATTCA
GGATTCCAGGTCTGGTGGTTCGGTATG-------------------TGCTTCTCGGTTCTTGCTGACTCCGCCGCTGTCG
CATAGGGCAGGCAGGCAGGGAGCACTTCACTCCACGGCGGTTGAAACCATGAGAGAGACCACGGCTGCTTGTGTGCTTCA
CCGGCATTGTAAATCAACAGATCAACTTCAAGGAATCAAGGTACGGAACTGCTGTATATAGAAGTCAAATTCCCTTGAAG
TAATAATT---TAATTTACTAATTTGACAAGGCATGATTATAATTTAGAAATCTAATGTCGCTCCTCCTTTAATGTTCCA
ATGATTGAAGGATGGAGAGGTAGAATACAATGAAAGTAGACCCGTGTTTCAAGCTCATTG------------------CT
GAAAATGCAAATGCACCCGAGGAAATAGCTGCAAAGGTCATATCTGATGACATCATCGAAATGTTCGACGTTGGTACGTA
TTCCTGTGTGGTGCCATTGGAACGATTTTTATTTTCCTTCCTTGCACCCTTCATGTCCAAATCCTAGCTCACCCCCTGAC
TGTTTGTGTTAGAGGTAATCATGTAATAAACAGAAAATTACAGAGTGTATGAGATGCTTATAAGTTCCTTAGGTAATCAT
TCATGGTTCTTTTATGGAAACATATGATGTTACTGTTTATTATTGGGGTTCAACAATTGTTTGGCAACGCAGGCTCTTGC
CACCACTTGGATGATATGTACTGCTAGATCTAGCTGACTGAATGATGATGTGCATTGTCTGGTCATGGAAGTCGAGCTA-
-------------------------------------TACATGTCAATAATACTGACTGGATTCCGATAAATTTCAGTCA
CATTAGAATAGTCACCTTCCCGAAGAGAATTACTTTTTGATACTACATTGGTGTTTCTATAAAATCTTAAGATACATTTC
TGTCAAGAAACTAGCAGATGTATGAAAAATGTAGAGAGATACATGCTACTAATTGAAGAATAGTGCTCAGAATACTTTGT
ACGGTAAATACAATAGGCTCTGGCATCTGGCATGCCTTCAT--AAAAAAGTTAACCTTCCTCTACGCGAGGAAATCTTTG
ATAGACCGCAACTCTTTGATGGTATCTTTGATCAACATTCTACTCACGGGCATTTCCTGAGAGCAAGATACTCCAAGTCT
AAGAAGTGAGGTCAG-GCAGTCAATCCTTCTCTCATCAGAAGGATCATACGTTCTTGAAAAAGTAGAAGAGTCATCTGTG
GCTGGCGACCCCTTCTCAATGTGGGAAAAAAGCCGCATGTCAACAACGTCCATTACTCCACCATGTATGGCCATTTCAGC
ATACTTGTGGAGATTTAATCCGTGTATGAACATGCTATCAGT
>chr5D_1
ACCAAGAAATATCGTCGAACCTTTATGCAACATCGGGTCAAAAGTATGCAATAACACATAC---ACGACTTGGAGCATGA
ATGCAACATTTACAACAAACTCCAAAGTCATCACAACTTGTGGCTTCATGAACCTT-CGAGCTCTCCCGCTTGACGGAGA
GCCAAGTCTGGCGACGGTTCATGACCAAGCGAACTATCAACATTCGTCTAGGTCCATGGTTGCAATGAGGTTGATGGAGA
TAGTTCCGACAATGATTTA-CCCCCTTTTGACAGAGTATCAAAAAGGACTCTCAATTGGAACCCCTCAGAACGCGCGGTG
GTGGGGGCAAAAAAAATTCCTCGATAGTTATTTCCCAGGGTTTCAAGAGATTATAAAGGCGGGGGCTTTGAGAGACGATG
GTGCGGAGTGCTAGGGAGCCCAAGTGGTCCCACACGACCATGCCCTGAGACGCGATCCAGGG-CGCGTGGAGCCCACATG
GCTCCCTTGATTGGCCTCCGGTGTCTCTCTTCGTCTTGATGTGAAAATTCCAAAAACATGCAGAAAAAAGTAGCAACTTC
CCGGCTAGCGTCACAAGTAAGCTCCTTCCCGAGATGGCCTACGGG---------AGGCCCAACAGGCCTCAGCCCTGCCA
CGTACATGCGGGCATCAAGACTATACCTGACCATGGGCAACCCGGCCCGGACGACCCGACCCGACCTGACACAAAAAAGC
CCGACCCAACCCGGCCCGATCTTGCCCGCCGGCCGGGCCTGGGCCCGTCATATTTGCGATTTATTGAAGAGGTCCGGCCC
AAAGCCTGATGGGCTTTTACATCGATGGGTCGGGCTTGGGCCTGGATTTTAGGCTCGAT----------GGCCAGGCCTG
GGCCTAGGTTTTCTTCGTCGGGCTTTGT----------CTGGCCCGAGGGATGGCCAGGTATAATCCAGACACAACACGA
CCCGGCATGGTTTAGGTGGTGTTTGGTTCTCTAGTCCTAGGACTTTTTCTAGTCCCAACTAAAAAGTCTCTAGTCCCTAA
AAAGTCCCTCCCTGTTTGTTTCCAGAGACTAAAAAGTCCCTAGTCCCTTCCTAGAGGTTATTAAATGACCATGTTGCCCC
TAATATATAGAAAAATAACAATCAAACAACACCATGGAGTGGCGGGCCAATGGGTGCATGGAGGGGCATTATTGGAAAAG
TCCCAAAAAGTCCCAAAAAGACTCTCCTTGAGAGTCTTCTTCATTTAGTCCCAAATGCCTAGTTTAGTCCCTAAAAAGTC
CCTCCTGTTTGGTAAAAAAGTCTCTAAGGGCAATGTCCAACGCGGACGCTAGCGGAGGGGCGCCAGGATAGGTATCCTGG
TCAACTGGCAGTTCCGCTTTTAATTCCTGGCGTCGCTCAAGCATCAATGCAAGAAGTAGCAGCGAGCGCTTCAGCCACTT
TTGCTTTGCGGGATAACATGCACCGATTTTATTAGCGCCTATAAACTAGCGCCTCGCGTTGAAACAAACCAACGCTTAGA
TAGTTTTCTGATTTTATGATATATTTTTATTTTCCTAAGCGCCCGTATAAACGGCTTGCATTGAAGATGCCCTAAGAGGG
ACTTTTTCTAGTCCCTACACAAAAAAATCCCTAGAAACAAACACCCCCTTAAACGGTCCAGGCATGACACGACCCACCCA
CCGGCGGCAGGCGCACCCGTGATGGCGCCAATCCCGGAGCGTGGCAGCTTCCCTTTCTAGCCCTCCGCGGCCGGAGGCGC
GGCGCCATGGCCAGGAACTCCCCGAGCGTCGGCGGCATCAAGCGGAGCTCCTCCGCGAGCCGAACATCCTCGTCGTCGGC
AATGTCGGCCCAGCGCAGGCCGCGCTGCACCCAGGCCGGAGGAGCAGAGGACAGGGAAGCCGGATCCCTTCTCTGCCCGG
CCACCACAGAGTCCATGGCGTTGGCGGAGGCGGACGGAACCATCAGGTCGCCGTGTATCCGCCTTGGTTACGTGCATTCA
GGATTCCAGGTCTGGTGGTTCGGTATG-------------------TGCTTCTCGGCTCTTGCTGATTCCGCCGCTGTCG
CATG-------------------------------GGCGGTTGAATGCATGAGAGAGCCCACGGCTGCTTATGTGCTTCA
CCGGCATTGTAAATCAACT--TCAAGTTCAAGGAATCAAGGTACGGAACTGCTATATATAGAAGTCCAATTCCCTTGAAG
TAATAATT---TAATTTACTAATTTGACAAGGCATGATTATAATTTAGAAATCTAATGTCGCTCCTCCTTTAATGTTCCA
ATGATTGAAGGATGGAAAGGTAGAATACAATGAAAATAGACTTGTGTTTCAAGCCCATTG------------------CT
GAAAATGCAAATGCACCCGAGGAAATAGCTGCAAAGGTCATATCTGATGAGATCATCGACATGATCGACGATGGTACGTA
TTCTTGTGTGGTGCCTTTGGAACGATTATTATT----TTCCTTGCACCCCTCATGTCCAAATCCTAGCTCAGCCCCTGAT
TGTTTGTGTTAG--------ATGTAATAAACAGAAAATTACAGAGTGCATGAGATGCTTATAAGTTCCTTAGGTAATCAT
TCACGGTTCTTTCATGGAAACATATGATGTTACTGTTTGTTATTGGGGTTCAACAATTGTTTGGCAACGCAGGCTCTTGC
CACCACTTGGATGATATGTACTGCTAGATCTAGCTGACTGAATGATGATGTGCATTGTCTGGTCATGGAAGTCGAGCTAT
------------------------------------ATACATGTCAATAATACTGACTGGATTCCGATAAATTTCAGTCA
CATTAGAATAGTCACCTTCCCGAAG--------------------------TGTTTCTATAAAATCTAAAGATACATTTC
TGTCAAGAAACTAGCAGATGTATGAAAAATGTAGAGAGACACATGCTACTAATTGAAGAATAGTGCTCAAAATACTTTGT
ATGGTAAACACAATAGGCTCTGGCATCTGGGCATGCATTCATCAAAAGATTAAACCTTCCTCTACGCGAGGAAATCTTTG
ATAGACCGCAACTCTTTGATGGTATCTTTGATCAACATTCTACTCACGGGCATTTCCTGGGAGCAAGATACTCCGAGTCT
AAGAAGTGAGGTCAGTGCAGTCAATCCTTCTCTCGTCAGAAGGATCATACGTTCTTGAAAAAGTAGAAGAGTCATCTGTG
GCTGGCGACCCCTTCTTGATGTGGGAAAAAAGCCGCATGTCAACAACGTCCATTACTCCACCATGTATGGCCATTTCAGC
ATACTTGTGGAGATTTAATCCTTGTATGAACATGCTATCGGT
>chr5B_4
---AAGAAATACCGTCAAACTTGTATGCAACATAGAATCCAAAGTTT------ACAACAACACAACAACTTGTAGCATGA
ATGAAAAATTTACATCAGGCTCCAAAGTCATTGCAATTTGTGGCTTCATGAACCTTTCAAGCTCTCCCGCTTGGCGGACA
GCAGAGTCTAGCAACGGTTCACGATCAAGCGAACTATCAACATTCGTCTAGGTCCATGATTGCAGTGA-GTTGATGAAGA
TAGTCCCGACAATGACCCCCCCCCCCTTCGACAAAGCATCAAAAATGATTCTAGATTGGAATCCCTCAGAATGTGCGGTG
GAAGGGACAGAAAAAAGTCTTC-ATAGTTATTTTCCGTTGGTTCGGGAGATTATAAAGGTGAGGGCTTTGAGAGACGATG
GTACAGAGCACCAGGGAGCCCAAGCGGTCCCACACGACCATGCCCTGAGACGCGATCCAGGGGCGTGTGGAACCCTCATG
GCTCTCCTGGTTGGCCTCTCGTGTCTCTCTTCGTCTTGACGTGAAAAATTAAAAATCATGCACAAAAAAACAGTAATTTC
CCGGGCGGTGTCGTGAGTAAGCTCTTTCACGAGATGGCCCATGAGAGAGCCACCAGGCCCAGCAGGCCTCGG-CCTACCA
CGTACATGTGGGTATCCAGACCTGGC------------------------------------------------------
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>chr5B_900
GACACCGAGCCCCCT-----------------------------------------------------------------
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-------------------------------------------------------------------------------A
CCGGCGGCAGGCGCACCCGTGATGGCGCCAAACCCGGAGCGTGGCAGCTACCCTTTCCGGCCTTCCGCGGCCGAAAGCGA
GGCGCCAAGAA-------TCCCCGAGCATCGGCGGCATCAAGCGGGCCTCCTCCGGGAGGCGAACATCCTCGTCGTCGGC
GATGTCGGCCCAGAGCGGGACGTGCGGCACCCAGGCCGGAGGAGCAGAGGGCAGGGAAGCCGGAGCCATTGTCCACCCGG
CCACCACGAAGTCCATGGCCGCGGCGGAGGCGGAGGGAACCATCATGTCGCCGTGTATTCGCCTTGGCTACGTGCATCCA
GGATTCGAGGTCTGGTGGTTCGGTATGACCCTGCACCGCCGCACGTTGCTTCTCGGCTCTCGCTGATTCCGCCGCTGTCG
CATAGGGCAGGCAGGCAGGGAGCACTTCACTCC-CGGCTGTTGAATGCATGAGAGAGACCACGGCTGCTTGTGTGCTTCA
CCGGCATTTTATATCAACT--TTAACATCAAGGAATCAAGGTACGGCACTGCTATATA--GAAATACAATTCCTTTGAAA
ATAATGATTTATAATTTACTAATTTGACGAGGCATCGTTATAATCTAGGAATCTAATTTTG--CCTACTTTAATGTTCCA
ATTATTGAAGGATGGAGAGAAAGAATACAACGAAAATAGACTCGTGTTTCAAGCCCATTGTTTCTAGCTCAAACATAGCT
GAAAATGCAAATGCACCTGAGGAAATAGCTGCAAAGGTCATATCTGATGAGATCATCGACATGTTCGACGTTGGTACGTA
TTCTTGTGTGGTGTCTTTGGAACGATTATTATT----TTCCTTGCACCCCTCATGTCCAAATCCTAGCTCAGCCCCTGAC
TGTTTGTATTAG--------ATGCAATAAACAGAAAATTACAGAGTGTATGAGATGCTTATAAGTTCCTTAGGTAATCAT
TCATGATT-TTTCATGGAAACATATGATGTCACTGTTTGTTATTGGGGTTCAACAATTGTTTGGCAACACAGACTCTTGT
CACCACTTGGATGATATGTGCTGCTAGATCTAGCTGACTGAATGATGATGTGCATTGTCTTGTCATGGAAGTCGAGCTAT
ATACTGCTCTGTTTTGGCTGGTGGTACAGACCTTAGATACATGTCAATAATACTGTCTGGATTCCGATAAATTTCAGTCA
CATTAGAATAGTCACCTTCCCGAAGAGAATTACTTTTTGATATTACATTGGTGTTTCTATAAAATCTAAAGATACATGTC
TCTCAAGAAACTAGCAGATGTGTGAAAATGTAGA--AGACACATGCTACAAATTGAAGAATAGTGCTCAAAATACTTTAT
ACGATAAATACACAAGGCTCTGGCATCTGGCCATGCATTCATCAAAAAATTAAACCTTCTTCTACATGAGGTAATCTTTG
ATAGCCTGCAACTCTTTGATAGTATCTTTGATCAACATTCTACTCACGGGCATTTCCTGGGAGCAAGATACTCCGATTCT
AAGAAGTGAGGTCAG-GCAGTCAATCCTTCTCTCATCAGAAGGATCATACGTTCTTGAAAAAGTAGAAGAGTCATCTGTG
GTCGGCGACCCCTTCTCGATGTGGGAAAAAAGCCGCATGTCAACAACGTCCATTACTCCACTATGTATGGCCATTTCAGC
ATACTTGTGGAGATTTAATCCTTGTATGAACATGCT------
>SNPs
---------------S------------------S----------------S-------SS-S-----------S-----
------------------------------------------S--------S----------------------------
--------------------------------------------------------------S-----------------
--------------------S----------S-------------------------------------------S----
-S----------------------------------------------------------------------S---S---
-----S---------------------------------------------S-------S--------------------
--------------------S-----S-------SS-------------------S----------------S-------
-S--S-----------------------S-S-------S--S-----------------------S--------------
-----------------------------S-------------S------------------------------------
-----------S----S----------------S-S-S------------------S---------------S---S-S-
-----------------S--S-S--S---S----------SS------------S---SSSSSSSSSSS--------SS-
------------------S---------SSSSSSSSSS----------------S-------------------------
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----------------------------------------------------------------S------S--------
----------------------------------------S---------------------------------------
-----------------------------------------------------------S--------------S-----
--------------------S----------------------------------------------S------------
--------------SS--S-----SS------------------------------------------------------
--------------------------------------------------------S---------S-------------
---------------------------------S-----------SS---------------------------------
------------------SSS--------------------------------S------------S-------------
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-----------------------------------S-----S------------S-------------------------
--------------------------------------------------S--------S--------------------
---S-----------S-----------S-----SSSS------------S---------------------S--------
------------SSSSSSSS------------------------------------------------------------
------------S-------------------------S-----------------------------------------
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------------------------------------------S------------------------S------------
---------------------------------------S-----------------------------S----------
-------------------------------SSSS-S-SSS--------S-S----------------------------
-----------------------------------------------------------S--------------S-----
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-----------------S--------------------------------------------------------------
---------------------S-----------------S--
>forward_860
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----------------------------------------AGTGGATTTTAGGCCCGACG--------------------
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>reverse_2484
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---CTGTGTGGTGCCATTGGAAC---------------------------------------------------------
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