>input_sequence_76711
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----------------------------------------ACACAGGGTTCACAGCT-ACACGTGCGTAGTTCAGCTTCT
ACCGATAATCTATCTAGGCTTCGAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGACTTTGCTGGCGATGCTGGTCGCGG
GCGCGTGGTGCGCGGCACCGGTGACCTTCACGGTGGAGAAGGGGTCGGACACGGGGTCGGGAAAGAAGCAGCTGGCGGTG
CTGGTGAATTACGACATGCCAGGCGACACCATGTCGGAGCTGGAGATCATGCAGCACGACGCCGACGACTGGGTGGCCAT
GACCAAGGGCGAGGGCGGCCTGTGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTTCAACTTCCGCTACTTCACCA
CGAAGGGCATGAAGAACGTCTACGACAGCGTCATCCCAGATAACTACACGATCGGCACCACCTACACACCCGAAGGGTAG
CG------TCGCTCGACGGCCATCCACAGAATTATGTTCGGTAGATCTTTCCTGGGTTTTGGCAATTTTTAAGAGAGATG
TGATGTACGGATAATAGAAAAAGTTGTTGAGG------------------------------------------------
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>chr5A_1_TraesCS5A01G530800
TCTGCTAGAGTTGCTCTTAGTTCGTTAGCTAGCTTCATGGAGTCATAGGATAGTCGTGCATGTAGTTAGTTATTTAGCTG
GATGAGGTCAGAGGGTGTTTGTTTTCAGAGACTTATTGGTTTAGGGACTTAAAAAAGTCCGTATAAGTTCTATCTAAACC
AAATAAGAGGGACTTATAGGGACTTAAAGTGGGCATTTGGAACTTATGAAATAAGACTCTCAAGAAGGGTATAGTTGTAA
TATGGTCTTTTAGTCCATGTTAAGTCGTAGGAACCAAATAGATAGGGACTTTTTAAGGACTTGAGACTTATAAGTTGGGA
TTAAAAAAATTCCTAGAACTTATAAACCAAACAGGGCCTTAGTTAGCGAACTAGTGTGTGCGTGTGTGATAGCTAGCTAG
GTGTGTATGCACCGTGTACAAAACCCCTCCCCCTTATACTGACGAAGACTAAAATTTGATATTTTTTGCGGGCTGACTGG
AATTTGTTTTAGCTGGTCTAAAATTGCAGGGTGTAGTAGCATGTACGTAAGTGTGTACTCCCTCCGTCTGCGAATAAGTA
TACATCTAGCTTTTGTTCTAAGTTAAAGTTTTTAAATTTTGATCAACTTTATAAAAAATAATAGTAATACATATGACATT
AAATTGATATATTATCAAAGTACATTTCAAAACGAATCTAGTGATACTAATTTGATGTCATAATTTTTTACTTTTTCCTA
AAAAGATGGTCAAAGTTTTAAAACTTTAATTAATTCAAAACAAAAGCTAGATATACACGTATTCGCAGATGAAGAAAGTA
TGTACGTACGCCGGTACGCGCCTAGCTATATATGGCACGATGCCCATGATATCCAATCATGCATGCCAAAACAAGCGGTC
AGGCCACACATGAACACGAGCACCTCCGGTGACCAAGGCGAACCGCATACGCGCCAACGGACAAGCGCGGCCAGCGCGAG
CGCCCATATATAAATTCCACAAACATACATCATCATCCTTACACAGGGTTCACAGCT-ACACGTGCGTAGTTCAGCTTCT
ACCGATAATCTATCTAGGCTTCGAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGACTTTGCTGGCGATGCTGGTCGCGG
GCGCGTGGTGCGCGGCACCGGTGACCTTCACGGTGGAGAAGGGGTCGGACACGGGGTCGGGAAAGAAGCAGCTGGCGGTG
CTGGTGAATTACGACATGCCAGGCGACACCATGTCGGAGCTGGAGATCATGCAGCACGACGCCGACGACTGGGTGGCCAT
GACCAAGGGCGAGGGCGGCCTGTGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTTCAACTTCCGCTACTTCACCA
CGAAGGGCATGAAGAACGTCTACGACAGCGTCATCCCAGATAACTACACGATCGGCACCACCTACACACCCGAAGGGTAG
CG------TCGCTCGACGGCCATCCACAGAATTATGTTCGGTAGATCTTTCCTGGGTTTTGGCAATTTTTAAGAGAGATG
TGATGTACGGATAATAGAAAAAGTTGTTGAGGCCACTCTTGACCGGTTCCTTTATGTATGTAATTGTGTCCGCTCAGTTT
CTCGAAGGTCCTAGGGGTAGGGA--GTGTGTTTGCGTTGATATGGCTAGTGTGCATCTGTGTGTGTGTGTTAGCATATGA
GTTTGTATTGTGTTTCAGAATAAACTATATTTGCTTAGGATCCTGAAATACAAATGGATTTTGTTTATCTTTTCACCAAC
TCGCCACTAGTTGTTTGGGTCAACTAGAAGAAAAAGAGAGTTTTTACGGTACATCATATTACCGTAAGTAGTGTGTAGTA
TATAACTGATTCAATGGTCAATATCAATTCCTCAAATTTTTGCTCCAAGACATTTCGGTAATTAACTATTAGAGTTTGGG
ATTAGTAATTAATGACAATACGATACCACCTCGACGACGCAGCCATCTCAGTTCATTTGCCATTCCTCACTACCGCCAGG
CAGCAGTCTCGTCGGTCACACAGGGCCGGTCGCTCTGCGTCGAACAGCCTTCGTCCGCCGCCACTCAGGATCTTCCTCCC
ATGCGTGATGCGTCCCAGCGACGACGCAGCCGCCCCGCCCGGCCCGGTTGCCCTCTTCCTATTTGCACATACTTCGGCGG
GCGGCCTGAGATCGCTTCCTCGCTTGCCCTCTCTCTGTCGCACGTACGTACACCGGCGCCCACTAATCTAAGATTTTACA
CAAAGGCACATAGCACACGGCATAGCACTAGCAGCAGTATAGCAGACACAAGCACATATCACATAACAGCATCACACATG
AACGGGCATCACACACAGAGCACACACAACACGCCGGACAAGCATATCCACACAGAGGACTACACACGCCACTACGCCAG
GTACTCCGCACGCACGCCGAGCAGCAGGCTCGCCGCAGCATGCGCTTGCAGATAACGGAGGAAAGGGCAGAGGGAGAGGT
AGCGAAGGAGAGGGCAGAGGGGGAGCGAGGCGAAGGGCGTTGCCCAGGTATCGGTACGGGGCTCGAGGTGGCGT
>chr4B_798
GTG-----------------------------------------------------------------------------
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TGTACGTACGCCTGTACGCGCCTAGCTATATATGGCACGATGCCCATGATACCCAATCATGCATGCCAAAACAAGCGGCC
AGGCCACACATGAGCACGACCACCTCCTGTGACCAAGGCGAGCCACATACGCGCCAAGGGACAAGCATGGCCACCGCGAG
CGCCCATATATAAATCCCACAAACATAGATCATCAT--ACACACACGGCTCACAGCT-ACACGTGCGTAGTTCAGCTTCT
ACCGATAATCTATCTAGGCTTCAAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGGCTTTGCTGGCGATGCTGGTCGCCG
GCGCTTGGTGCGCGGCCCCGGTGACATTCACGGTGGAGAAGGGGTCGGACACGGGGTCAGGCAAGAAGCAGCTGGCGGTG
CTGGTGAGTTACGACATGCCAGGCGACACCATGTCGGAGCTGGAGATCATGCAGCACGACGCCGACGACTGGGTGGCCAT
GACCAAGGGCGAGGGCGGCCTGTGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTTCAACTTCCGCTACTTCACTA
AGAAAGGCTTGAAGAACGTCTACGACAACGTCATCCCCGACAACTACACCATCGGCACCACCTATACACCTCAAGGGTAG
CGCGTCCTTCCGTCAACGTAGGTCCGCAAAAGTATGTTCAATCGGTTTTCCCTGGGTTTTGGTAGTTTTTTAGAGAGATG
TCATGTATGAATAATAGAAAAAGTTGTCCACGCCACTCTTGACCGGTTG-TTTATGTATGTAACTGTGTC----------
------GGTGCTAGGGTTAGGGA--GTGTGTTGATATG-----GGCTAGTGTGTCCC----TGTGTGGGTAAGCATATGC
GTTTGTACTCTGCTTCTAAAAAAACAATATTTGCTTAGGATCGTGAAATA------------------------------
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>chr4D_801
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TGTACGTACGCCTGTACGCGCCTAGCTATATATGGCACGATGCCCATGATATCCAATCATGCATGCCAAAACAAGCGGCC
AGGCCACACATGAGCACGAGCAGCTCCGGTGACCAAGGCGAGCCACATACGCGCCAACGGACAAGCATGGCCACCGCGAG
CGCCCATATATAAATTCCACAAACGTAGATCATCATCCACACACACGGCTCACAGCTCACACGTGCGTAGTTCAGCTCCA
ACCGATAATCTATCT-----TCGAGATGGCATCCTCGAGAAGGTTGCTGGCGGTGGCTTTGCTGGCGATGCTGGTCGCGG
GCGCGTGGTGCGCGGCACCGGTGACCTTCACGGTGGAGAAGGGGTCGGACACGGGGCCGGGCAAGAAAAAGCTGGCGGTG
CTGGTGAGTTACGACATGCCAGGCGACACCATCTCGGAGCTGGAGATTATGCAGCAGGACGCCGACGACTGGGTGGCCAT
GACCAAGGGCGAGGGCGGCCTATGGACCTTCGAGAGCGCCGATCCGCTCGTGGGCCCCTTCAACTTCCGCTACTTCACTA
AGAAAGGCATGAAGAACGTCTACGACAACGTCATCCCCGACAACTACACCATCGGCACCACCTATACACCTCAAGGGTAG
CGCGTCCTTCCATTGACGTAGATCCGCAAAAGTATGTTCAATCGGTCTTCCCTGGGTTTTGGTAGTTTTTTAGAGAGATA
TCATGTATGAATAATAGAAAAAGTTGTCGACGCCACTCTTGACTGGTTG-TTTATGTATGTAACTGTGTC----------
------GGTGCTAGGGTTATGGAGTGTGTGTTGATATG-----GGCTAGTGTGTCCC----TGTGTGGGTAAGCATATGC
GTTTGTACCGTGTTTCTAAAAAAACTATATTTGCTTAGGATTGAGAAATA------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------------S-----------------------------------------------------------------S-
-------------S---------------------------S--S---------------------SS-----S------
---------------------------S----------SS-----S--S-------------------------------
-------------------------------------------------------S------------------------
-------------------------------------------------------------S------------------
-------S------------------------------------------------------------------------
------------------------------------------------------------------------------S-
S---S----------------------S---------S--S--------S--------------S-----SS--------
----------SS------SSS----S--S--S-------SS-S-S----S------------S-S-----S---------
-S-----S-S-----------------S--S-----------------SS-------------S------SSSSSSSSSS
SSSSSS---S------S---------------SSSS-SSSSSS----------SSS-SSSS------S--S--------S
-------S--------SS--S---------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_394
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------------------------------------------------------TGTGTGCGTGTGTGATAGCT------
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>reverse_2334
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-------------CACAGAGCACACACAACACG-----------------------------------------------
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