>input_sequence_76690
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-----------------------------------------------------------------ATGGCAGAGTCGGAC
GGTGCCGAGTACCGCTGCTTCGTCGGCAGC--------------------------------------------------
CTGTCCTGGAACACCGACGACCGCGGCCTCGAGGCTGCTTTCAGCCCCTTCGGCGAGATCCTCGACGCCAAGGTCCGCCG
TACACCCATTCTTCTCGCTCTTCTCGATATCTTA-GC-----TGCTTTCTGACTCGACCATGTATGGCGCGTGCAGATCA
TCAACGATCGCGAGACGGGGAGGTCCCGCGGCTTCGGGTTCGTCAGCTTCTCCAGCGAGCAGGCGATGCAGGACGCCATC
GAGGGGATGAACGGTAAGGAGCTCGACGGCCGCAGCATCGTTGTCAACGAGGCCCAGTCCCGCGGGTACGGCGGCGGGGG
TG---------------------GCGGCGGAGGTGGTGGCAGGTACGGCGGTGGTGGCGGGTATGGCCAGCGCCGCGACG
ATGGCTACGGGGATGACGGCTACGGCGGTGGCCGGGGTTACGGAGGCGGACGCTATGGCGGTGGCAGGGGGTACGGCGGG
CGGCGTGACGGCGGCTACGGCCGCGGAGGCAACTCCGACGGATACTGA--------------------------------
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>chr6D_1_TraesCS6D01G199100
TCCGGCTACAGCCGTCGGGATCCGCCGTCGG-------------CTCCTCCCTTTCCTCCGGCCGCCTCCCATCAACGCG
CTCGCCCAGCGGGAGAAGGCCGGGTCGGCTGCCTGTGTCCCAGCGAGAGAAGGCCGGGCCGAGTGCGCGTGTCCCAGCGG
GAGCACCGCAGCCATGGCCGCACCTGAGATGCACCACCGCAGCCCGCCGCTTCCGCTGGAGCTCCATGGCCGCACCTGAG
GAGGACGGGGAAGGAGAAGAGGATGGGGAAGAAGAAGAGAGGGAAAAGGAGGTGGGTGGATGACATGTGGGACCCACGTT
CCACCTCAACAAAGTGTACACAGACATGCCATGTTGGACCGACAAGTGGGTCCCACCAGTCAGTTTTGCTGTTTGTGCGA
GCTAATCTGTGAATCGGTGTGATTTGTTACTCACTTACCTCAGAGTTGGTGGTTTTTTGTGATTTTTGAACCCTAGCCAC
AAATGTGGTGGCTTTGAGCAATTTACTCTATCTTCCACGACTATGATAATTTCCGTGTCGCTGAAGCAATATCATCAAGT
ACATCGCGGCGTGTTTGTGTCGATTTCTTGTGAGATTTACATGCATCGTCTTGAGCACAGCAGGCATGAGAAACTCTTTG
AGCCCATTGACATTTTGCTTTTTTTTTTAAATGAGACATTTTGCTTTCTACGGTAGCGAACCCTCCTTGAGCCTTCCATG
TATAGTGACG----------TAGTGTCTCAACGTAGCTTCACAATATTAGCTGGTTTTAGAGAGCGTTCTTATTTCTCGA
TCTACAATGTCGACACCATGGTTCAGTTTGGTATATGTATGTCGTCACTATGTTGGTATTCTGCCAT--GATCGGTGTCA
GCTGGACGCGATCCGGACGGTGCGTCAACGTCGCTATAAAGCTCGGCCGCGCGCGGCGCCTTCCTCTCATTGCTCTCGCA
GAGTGTGGTGGGTTGTCTCCTTCTCTCCATCCGGTACGCTTGGTTCGTGTGAGGTTCCCGCGGGAATGGCAGAGTCGGAC
GGTGCCGAGTACCGCTGCTTCGTCGGCAGC--------------------------------------------------
CTGTCCTGGAACACCGACGACCGCGGCCTCGAGGCTGCTTTCAGCCCCTTCGGCGAGATCCTCGACGCCAAGGTCCGCCG
TACACCCATTCTTCTCGCTCTTCTCGATATCTTA-GC-----TGCTTTCTGACTCGACCATGTATGGCGCGTGCAGATCA
TCAACGATCGCGAGACGGGGAGGTCCCGCGGCTTCGGGTTCGTCAGCTTCTCCAGCGAGCAGGCGATGCAGGACGCCATC
GAGGGGATGAACGGTAAGGAGCTCGACGGCCGCAGCATCGTTGTCAACGAGGCCCAGTCCCGCGGGTACGGCGGCGGGGG
TG---------------------GCGGCGGAGGTGGTGGCAGGTACGGCGGTGGTGGCGGGTATGGCCAGCGCCGCGACG
ATGGCTACGGGGATGACGGCTACGGCGGTGGCCGGGGTTACGGAGGCGGACGCTATGGCGGTGGCAGGGGGTACGGCGGG
CGGCGTGACGGCGGCTACGGCCGCGGAGGCAACTCCGACGGATACTGAAGGAGCTGAGGGGACGG----CCCCACGCGGC
CAGTCATCTTGCGAGTTCGCCGTCGTGATCCCGAGTTATCTTGTCTCTTGTGTTATGTGGTTTCCCATTTGTGTT-----
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----TTTGATCGCAAGCTCGTCGGTGGTTGGCTGTTATGGAAAAATTAGTTAGCTGTCCCGGTGAAGAAACTCGATCAGG
CAGTGGAGTCAGTATCGTGCTATCTTGTTACACTTTTGACGCAATCCCAATGTGGGGATGTGATGCTAATGTTAAACTCT
GTTACCAAAAAAAT------AAAAAAATCTATCTCGGCTTTTCCAAATTTTACGGAACCGTTACACTTTTGAGGCAAACG
TTTTGTGAACT-----ATTTTGCACGAGTCTTGGGTCAGCGCAAATTAGCCACGTCAACGCATGA-TTTTTCTGTGAAAT
ATGGGCGAGCCGTTGCGAACGCCTAAGCTCTGTCTCCCGTCACCCCCTATCCATATTTTCTAAATGAAAATCCTACATCT
ATGAAGAGCTACGTACCATTTTACGTAAACTACCTAACATTTTTTTTTCGAGAATCAACTACCTAACAACTAAACCTCCC
CCCTCCCTTGATTTTCAAGGGGTAGGCCCGTCCTTCCTCTTATCTCCTATCATATTCATCCACCTGGTTCGTTACGTTAA
TTACGTAGAACTTTTTACGTAGCTCTAGCATTGCTCTTTTTTAAATAAAAATCAAAGGGGTTCCCCCTCTCCCCATCACA
ACTTTTACTAAAGCCAAGGCAATATCAATCAAAACGTTTCACAGCTCTCTGCCGAAACTAGAAAGTAGCTGCAATGGATT
ATTACAAGTTACAGAGTTTTAAAGCCAGATAGATAGGCATTCAACAGGAATACCATTTGGCCCAGCAAAAAGAGCCTATC
GAACTCCCTACACATTACTGGACCAAACAATCCCAAGAAGCTCCCTGCGGCAACGATCAAGTAACCTTATGCAGCGGAGG
CGTAGCGCAACTTGACTGTCGGAGCACAAAACC
>chr7D_1
TCCGGCTACAGCCGTCGGGATCCGCCGTCGGGCCATCACGGTGGCTCCTCCCTTTCCTCCAGCCGCCTCCCATCAACGCG
CTCGCCCAGCGGGAGAAGGCCGGGTCGGCTGCCTGTGTCCCAGCGAGAGAA-----------------------------
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-----------------------------------------------------------------------------GGC
GGGGCCGAGTGCGCGTGCCCCAGCGGGAGCACCGCAGCCATGGCCGCACCTGAGAAGCACCACCGCAGCCATGGCCGCGC
CTGAGAAGCACCACCGCAGCCCGCCGCTTCCGCT----------------------------------------------
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-----------------GGAGCTCCATGGCCGCACCTGAGGAGGACGGGGAAGGAGAA----------------------
-----------------------GAGGATGGGGAAGAAGAAGAGAGGGAAAAGGAGGTGGGT------------------
----------GGATGACATGTGGGACCCACGTTCCACCTCAACAAAGTGTACACGTAGACATGCCATGTTGGACCGACAA
GTGGGTCCCATCAGTCAGTTTTGCTGTTTGTG------------------------------------------------
-------------------------------CGAGCTAATTTGTGAATCGGTGTGATTTGTTACTCACTTGCCTCAGAG-
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-----------------------TTGATGGTTTTTTTGATTTTTAAC---------------------------------
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>chr6A_566
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------------------GTCGATTTCTTGTGAGATTTACATGCATCGCCTTGAGCACAACAGGCATGAGAAACTGTTTG
AGCCCATTGACATTTTGCTC--------------------------TCTATGGTAGCGAACCCTCCTTGCGCCTTCCATG
GGTTCCATGGGTAGTGACGTTAGTGTGTGAACGTAGCCTCACAATATGAGCTGGTTTTAGAGAGCGTTCTTATTTGACGA
TCTACAATGTCGACACCATGGTTCAGTTTGCTATATGTATGTCGTCACTATGTTGGTATTCTGCCATATGATCGGTGTCA
GCTGGACGCGATCCGGAGGGCGCGTCAACGTCGCTATAAAGCTCGGCCGCGCGCGGCGCCTTCCTCTCATTGCTCTCGCA
GAGTGTAGTGGGTTGTCTTCTTCTCTCCATCCGGTACGCTTGGTTCGTGTGAGGTTCCCGCGGGAATGGCAGATGCGGAC
GGTGCCGAGTACCGCTGCTTCGTCGGCAGC--------------------------------------------------
CTGTCCTGGAACACCGACGACCGCGGCCTCGAGGCTGCTTTCAGCTCCTTCGGCGAGATCCTCGACGCCAAGGTCCGCCG
CACGCCCATCCTTCTCGCGCTTGTCGATATTGTTTGCTGCTTTGCTTTCCGACTCGACCATGCATGGCGCGTGCAGATCA
TCAACGATCGCGAGACGGGGAGGTCCCGCGGCTTCGGGTTCGTCAGCTTCTCCAGCGAGCAGGCGATGCAGGACGCCATC
GAGGGGATGAACGGTAAGGAGCTCGATGGTCGCAGCATCGTCGTCAACGAGGCCCAGTCCCGCGGGTACGGCGGCGGGGG
TGGCGGCAGGTACGGTGGCGGCGGTGGCGGAGGCGGTGGCAGGTACGGCGGTGGTGGCGGGTATGGCCAGCGCCGCGACG
ATGGCTACGGGGATGACGGCTACGGCGGTGGCCGCGGTTACGGAGGCGGACGCTACGGCGGTGGCAGGGGGTACGGCGGG
CGGCGTGACGGCGGCTACGGCCGCGGAGGCAACTCCGACGGATACTGAAGGAGCTGAGGGGACGG----CCCCACGCGGC
CAGTCATCTTGCGAGTTCGCGGTCGTGATCCCGAGTTATCTTGTCTCTTGTGTTGTGTGGTTTTCCATTTGTGTTTTTTG
AGAGTAAATAGCATAAAACTACTACAATTCGGGTTAGGGTTTTAAAAAACTACTGGATTTTATTTTTTTCACTGATAACT
ACCAAGTTCGGGATCGGTTGTTTTAAAAAACCCAAAATGTTGAGTGTTTCACAATTGATCACGATTATGACAGGTTGGGC
CCGCACCTAAATCAACCATCTGTTTGACCGTTTGTTTGACTGTTAACTGACATATGGGGCCCACATGTCATTTTCCTCTT
CCTCTTCTCTTTCTTCTTCCTCTCTGTCTCTTCTCTTCTCTCCCCGGTGTCTCTCGAGCCGGCGATCCTCCCCTCTCCTC
CCGAGCCGGCGACCACACTCCCTCCCCTCCCCAGCCTCCCCATGATCGTGGGAGGTGCTCGCCAAAGCTTGGTGGTGGAG
TTGGCGACGAGGAGGCATACCTGCCCCGCTGCTGGAGTGCGCACCTCTGCCACCGCAGGCGAGGCAGGGCGTGGCGGTGG
CCGCAGGCGAGGAACAGAGTGGATCCGGCCGCTGCAGGCGTGACTCGAGGCAAGGCAGGGCAGCGGCCGCGGGGAGGCAA
GCACGGCGGCCACAGGGAGGCAGGGTGAGGCGGCGGTCGCATGCAAGGCAAGGCGTGGCGGCGGCCGCAAGAGAGGAACG
GCGCTGCGGGCCCGGCTCGCCGGCGCAGGAGATGCACGGCGTCAATCCGGCCACTGCAGGCACGGCTTGCCGGCCGGGGG
AGGCGGCGTTCGGGCAGAGCGCTCGGGATCGAGGTCCTGGCGACGCGGCTCCTCTGGATCGGGAGGAGGGACCTGATTGC
TTTTTTTGCAAAAACATGTAGGGACCTGATTGAAAACTCATAGGGACCTGATTGCTTTTTTTAGAAAACTTACAGGGACC
TGATTACTTTTAGAAAATTTACAGATGGGACCTACATGTAAGTTAATGGTCAAAGTAAACGGTCAAACAAATGGTTATCT
TACGTGTGGGCCCCAATTGTCATAATCATAATCAACTGATAAGGACTCGGCGTTTTGGGTTTTTTGAAACAACCGACCTC
GGACTTGGTAGTTATTAGCGAAAAAATAAAATTCGGTAGTTTTTTGGAACCCTAACCCGAATTGTAGTAGTTTTATAGTA
GTTTTTTGATCGCAAGCTCGTCGGTAGTTGGCTGTTATGGAAAATTTAGTTAGCTGTCCCGGTGAAGAAAATCGATCAAG
CAGTGGAGTCAGTATCGTGCTATCTTGTTACAATTTTAACGCAATCCCAATGGGGGGATGTGATGCAAATGTTAAACTCT
GTTACCAAAAAATAAGGAAAAAAACAATCTATCTCGGCTTTTCCAAATTTTACGGAAT----------TGG-GGCAAACG
TTTCGTGGACCATTGGATTTTGCACGAGTCTTGGGTCAGCACAAATTAGCCACGTCAACGCACGATTTTTTCTGTGAAAT
ATAGGCGGGCCGTCGTAAACGCCTCAACTCTGTCTCCCATCACCCATTATCCATATTTTTTAAATGGAAATCCTACATTT
ATGAAGAGCTACGTACCATTTTACGTA-----------------------------AACTATCTGACAACTAAACCTCTT
CCT--CCTTGATTTTCAAGAGGTAGGCCCGTCCTTCCTCTTACCTCCAATCATATTCATCCACCTGATTTGTTATGTTAA
TTACGTAGAACTTTTTACGTAGCTCTAGCATTGCTCTTTTTAAAATGAAAATCAAAAGGGTTCCCCCTCTCCCCATCACA
ACTTTTACTAAAGCCAAGGCAATATCAATCAAAATGTTTCACAACTCTCTGCCGAAACCAGAAAGTAGCTGCAATGGATT
ATTACAAGTTACCGAGTTTTAAAGCCAGATAGATAGGCATTCAACATGAATACCATTTGGCACAGCAAAAAGAGCCTATC
GAACTCCCTACACATTACTGGACCAAACAATCCCAAGAAGGTCCCCTCGGCAACGATCAAGTAACCTTATGCATTGGAGG
CGTAGCGCAACTTGACTGTCGGAGCACAAAACC
>chr6B_701
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-------------------------------------------------------------------------TTCCATG
GGTAGTGACG----------TAGTGTGTGAACGTAGCTTCACAATATTAGCTGGTTTTAGAGAGCG---TTATTTGTCGA
TCTACAATGTCGACACCATGGTTCAGTTTGCTATATGTATGTCGTCACTATGTTGGTATTCTGCCAT--GCTCGGTGTGA
GTTGGACGCGATCCGGACGGCGCGTCAACGTCGCTATAAAGCTCGGCCGCGCGCGGCGCCTTCCTCTCATTGCTCTCACA
GAGTGTGGTGGGTTGTCTTCTTCTCTCCATCCGGTACGCTTGGCTCGTGTGAGGTTCCCGTGGGAATGGCAGAGTCGGAC
GGTGCCGAGTACCGCTGCTTCGTCGGCAGC--------------------------------------------------
CTGTCCTGGAACACCGACGACCGCGGCCTCGAGGCTGCTTTCAGCCCCTTCGGCGAGATCCTCGACGCCAAGGTCCGCCG
CACGCTCATCCTTCTCGCTATTCTCGATATTGTTTGC-----TGCTTTCTGACTCGACCATGCATGGCGCGTGCAGATCA
TCAACGATCGCGAGACGGGGAGGTCCCGCGGCTTCGGGTTCGTCAGCTTCTCCAGCGAGCAGGCGATGCAGGACGCCATC
GAGGGGATGAACGGTAAGGAGCTCGACGGCCGCAGCATCGTCGTCAACGAGGCCCAGTCCCGCGGGTACGGCGGCGGGGG
TGGCGGCAGGTACGGCGGCGGCGGCGGCGGAGGAGGTGGCAGGTACGGCGGTGGTGGTGGGTATGGCCAGCGCCGCGACG
ATGGTTACGGGGATGACGGCTACGGCGGTGGCCGGGGTTACGGAGGCGGACGCTATGGCGGTGGCAGGGGGTACGGCGGG
CGGCGTGACGGCGGCTACGGCCGCGGAGGCAACTCCGACGGATACTGAAGGAAAGGAACTGAGGGAGGACCCCACGCGGC
CAGTCATCTTGCGAGTTCGCCGTCGTGATCCCGAGTTATTTTGTCTCTTGTGTTATGTGGTTTCCCATTTGTG-------
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--TTTTTGATCGCAAGCTCGTCGGTAGTTGGCTGTTATGGAAAAATTAGTTAGCTGTCCCGGTGAAGAAAATCGATCAAG
TAGTGGAGTCAGTATCGTGCTATCTTGTTACACTTTCGACGCAATCCCAATGTGGGGATGTGATGCTAATGTTAAACTCT
GTTACCAATTTTTTTT-------------TATCTCGGCCTTTCCAAATTTTACGGAATCGTTACACTTTGG-GGCAAACG
TTTTCTACACCATTGGATTTTGCACGGGTCTTGGAGCAGCGCAAATTAGCCACGTCAATGCACGATT---TCCGTGAAAT
ATAGGCGAGCCGTCGCGAACGCCTG-ACTCTGTCTCCCGTCGCCCCTTATCC----------------------------
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>SNPs
------------------------------------------------------------S-------------------
---------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS------------------------------S----------S---------------S----
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------------S----------
SS------------------------S-S----------------------------------------------S----
------------------------------S-------------------------------------------------
--------------------S-----------------------------------------------------------
------------------S-------------------------------------------------------------
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S--S-----S--------------------SS-S----------------------------S-----------------
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-------------------------S--------------------------------------------S-------S-
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------------S-----------S--------------------------------S-----------S-S--------
-------S--S---------------------------------------------------S-----------------
--S----------S----------S-S-------------------S------------S------S-----------S-
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--S-------------SS
--SSS--------------S----------------------S----S------------------S--S----S-----
-----------------------------------------S----S---------S-----------------------
----------------------------------S--------S--------------S---------------------
------------S---------------------------------S--------------S------------------
----------------------------------------S----SS--------------------------SS-----
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>forward_298
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--------------------------------------GAGGGAAAAGGAGGTGGGTG----------------------
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>reverse_1234
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---------------------------------AGCTGCTTTCTGACTCGACC---------------------------
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>forward_307
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-----------------------------------------------GGAGGTGGGTGGATGACATG-------------
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>reverse_2951
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----------------------------------------------------------------------CTCGATCAGG
CAGTGGAGTC----------------------------------------------------------------------
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