>input_sequence_76679
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---------------------------------------------------------------ATGGCGGGCGTGGGTCG
TAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATTGTCATCGGCTTCGCAAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGAGCCACCTTCTACTTCCTCGTCTTTGCCATCCTC
GCGGGCGTCGTCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACATGGCGCGGCGACAGCCTCGCCACCTC
CGCCTCGTCCTCGCTCGTGGCATGGGCCATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGT
ACCGCGGGTGGCGCCTCAGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTCACGCAGCTGCTTTACGTGCTGGCGCTG
CACTCCGGCCTCTTCGGGAACCAGTTGGGTGGCAACCATGCTGGCG---GGTACCCGGCGGAGCA---TGCGTACGGCGC
AGG---CG---GCGACCCGCACAA------CAAGGGCATGGGCACCGGCGGCGTAGCCAGGGTCTGA-------------
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>chr5D_1_TraesCS5D01G558700
TTGGGCGTGGACTGTGGCAAAGTTGCAAGCACGGAATTTCCCAATTCGAGGTGGTCGCGCAATGTTCACCTGTCGTTGCG
AGCGCAGCATTCTTTTGGTCTTGAGTGAGCTTCTTGGAATCCCGACGGTACGGCTCCTCGAGCCATGGCGAGGGGGTAGG
GTCCCTCTTCAGTGACAAAGCAGGAAGATGCCGTGTCCGCTCCCCCCACGGGTGTTCTTGGTGCAAGGTCCATTTTCGAC
GGTGGCTATGTCCCGCTCTGCAGCTCCGTCCTTGATTTCTATGATCCTAGCTAGTGTGAAGTGCTCAGCCTCTAGCAAAT
TGTAATCTGTATATTCATTTCTTTAGCTGCTTATGGAGGATGCAGTTTGTGTTTGCTTTACGGTGATCCTCGTTGTACTC
GTTTGGCCGTTGTACTCCTAGCCGGTTGATGACTTTGTTAATACAAAGCCCATGAGCCAGTAATTCAAAGTCGGACCCTT
CAAAAGCCTTTGTTCTTAAAAAAAGATGTTTCTGGATCCATCGGACCGTCTCCTGTTACTAAAAAGAAAGACACCGAAGC
AAAGTGTACCCACGACGTGAGCTGATTCGGTTGATAGATAGACCGTCTATATCTAGTGGCCAGGAACGCTTCTCGCCAAG
CGGAACCACCAGTAGGCTGCCAACGGCTACTGGAAGCAACTACCGTACGTGTAAAGCCCATGCGGCACGTGTCCTC----
------CCACCTGTAAGCGGCGCATCACGCGTGTCCCCTCACACGCGCCCTCTAGCACCACACCTATCTATATATAATCC
GACTACA----CTCCACTCGACCACCTCATCCAGAAATAATCACTTTCTCCATTCGATTCTTCCTCTTGCTCTTGCCCTC
AATCTCCTCGCTACGTCGTTAGCTAATCTAACCATCAGTCCACCAAAGCCAATCCACTGAGTGCGAGAGCTCCAT-CTCC
ATCTCGATCTCGACCAAGGAGAGGAAGCTAGCTAGCATAGCAACAGGCAGTA--------GCAATGGCGGGCGTGGGTCG
TAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATTGTCATCGGCTTCGCAAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGAGCCACCTTCTACTTCCTCGTCTTTGCCATCCTC
GCGGGCGTCGTCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACATGGCGCGGCGACAGCCTCGCCACCTC
CGCCTCGTCCTCGCTCGTGGCATGGGCCATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGT
ACCGCGGGTGGCGCCTCAGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTCACGCAGCTGCTTTACGTGCTGGCGCTG
CACTCCGGCCTCTTCGGGAACCAGTTGGGTGGCAACCATGCTGGCG---GGTACCCGGCGGAGCA---TGCGTACGGCGC
AGG---CG---GCGACCCGCACAA------CAAGGGCATGGGCACCGGCGGCGTAGCCAGGGTCTGAATCGGGTAGAGAC
ACCGGCACCGTGCTCCATCGCTTGGCGGTA----GACAGTGACGGGCGGATAATAAGGTGTATGTATGTGTGTGTGTGTG
TGTGTGTGTGTTCCGTCCCGTATGGTGTGAGCGTACGTTGTATGCAGACATGGTGTGCACGGTAGGCATGTAGTGACG--
----------GCGTGCGTGCGTACATGT-GTAGTGCTGCAGGATGGGCCCTTCTTCTTAGTGTGTTT-------------
TGTGTTTATTATGTAGTCCGAGATCAAGATGGAGATCGATCAGTCCATGCTATGCTTCTTCATTCTCCGACCAGACAATT
GCAATGCATGTCTGGGTGTGGATGAATGGCTGCACTTGTTTAATTTAGTACTACTACTCTACAAATCCGTTTGTGTTGTG
TTGTGCCCAATTGCAAGTGCAACCGTGTGTGTTCTTTCTGCAGAAGCTACTTTTAGCTGCTTGCTCAGTACATATATACT
GTGGATACATAGTAGCATCGATGTGTATTGTGCAGTGAAGTGCCGTGCCGTGCGTACAGCTGCTACGTACTCGGCGAATG
GGCACCCGTTTGTTTTCCCGTTTGATAGTATACAATATCAAATTCTTCTCCAATCTGTGGCCGCACGTCCCATATGCAGA
CCGATGATGGTAGTCTTTTCCTCCTGCGAGGACAGGACACGGCCGGCCCGGGCTACAGGGTCTAGAAGCTGCTTCAAAAT
TCTTGTCTTAGATTTATTTAAATACAGATACCAAAATTTTTGTTTTAGATTTATCTACCAAAATTCTTGTTTTAGATTTA
TCTAAATACAGATACAACGTTTAGGTACATCTGTATCTAAGAGGGATTTCCAAAATTCTTGTCTTCAATTTATACCAAAT
TTTTTGTTTTAGATTTGTTTAAATGATGTATCAATAACTTTTAATATTAGATATATCTGTATGTATCTAGACAAATCTAA
GATAAGTATTTTGAGACGATGGGAGTCGTGTCAGCCTCTGCACAACGTGCCATGCAT
>chr5B_642
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-GGAACCATCCGTACGCTGCCAACGGCTACTCGAAGCAGCTAC----CGTGTAAAGCGGTAAAGCCCCATGCGCGCACGC
GTCACGCCGCCCGTAAGCGGCGCATCACACGTGTCCCGCCCCTTACTCCCCCTG----CACACCTATATATTTATCCC--
-ACTACGCTAGCTTCACTCCACCACCTCATTCAGAAATCATCATA--CTGCATTCGATTCTTGCTTTGCAC----CCAAT
CCCAGTACGCAG---------------CTAATCATCGGTCGACCAAAGCCAATCCAGTGATTGACACAGCTCCATCCTCC
ATCTCCACCTCGACCAAGAAG--------------------AAGGTAGCAGTAGCAAATCGCAATGGCGGGCGTGGGTCG
TAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATCGGCTTCGCCAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCCTCTTCGCCATCCTA
GCCGGGGTCGTCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTGGCCACCTC
CGCCTCGTCGGCGCTGGTGGCCTGGGCCATCACGGCGCTGGCCTTTGGCTTGGCGTGCAAGGAGATCCATATCGGCGGGT
ACCGCGGGTGGCGCCTCCGGGTGCTCGAGGCGTTCGTCATCATCCTGGCCTTCACGCAGCTGCTCTACGTGCTCGCGCTG
CACTCTGGCCTCTTTGGGAACCAGTTCGGTAACCATGCCGGTGGTG---GGTATCCGGCGGAGCA---TGCCTACGGCGC
CGGCGTCG---GCGACCCGCATAA------CAAGGGCTTGGGCACCGGCGGCGTGGCCAGGGTGTGAATAGGATAG----
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>chr4A_769
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----------------------------------------------------------CACACCTATATATTTATCCC--
-ACTACA----CTCCACTTCACCACCTCATCCAGAAATCATCACAT--TCCATTTGATTCTTGCTTCCGCCAAATCCAAT
CCCAGCACGTAG---------------CTAGATCAAGATCAACCAAAGCGAATCCAGTGAGTGTCAGAGCTCCAT-TTCC
ATCTCCACCTCGACCAAGAAG--------------------AAACGGGAGCA--------GCAATGGCGGGCGTTGGGCG
TAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATAGGGTTCGCGAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTC
GCCGGGGTCGTGGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTC
CGCGTCCTCCTCGCTGGTGGCCTGGGCGATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGT
ACCGAGGGTGGCGCCTCCGGGTGCTGGAGGCGTTCGTGATTGTTCTCATGTTCACGCAGCTGCTGTACGTGCTGGCGCTG
CACTCGGGCCTCTTCGGGAACCAGTTCGGTGGTAACCATGGTGGTG---GGTATCCGGCGGAGCA---CGCGTACGGCGC
AGG---CGTCGGCGACCCGCACAACAAGGGCATGGGCATGGGCACCGGCGGGGTCGCCAGGGTCTGA-------------
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>chr5D_984
AG------------------------------------------------------------------------------
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--------------------G--------------------AAAAGGCAGAA--------GCAATGGCGGGCGTGGGTCG
TAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATCGTCATCGGGTTCGCCAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTC
GCCGGCGTCGTCGGCGCTGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTC
CGCCTCGTCGGCGCTCGTGGCGTGGGCGATTACCGCCTTGGCCTTTGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGT
ACCGCGGGTGGCGGCTCCGGGTGCTGGAGGCGTTCGTCATCATTCTGATGTTCACGCAGCTGCTGTACGTGCTCGCGCTC
CACTCCGGCCTCTTCGGGAACCAGTTCGGTGGCAACCATGCTGGTG---GGTATCCGGCGGAGCA---TGCGTACGGCGC
AGG---CG---GCGACCCGCACAACAAGGGCATGGGCATGGGCACCGGCGGCGTCGCCAGGGTCTGA-------------
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>chr5D_990
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--------------------------------------------AGGCAGCA--------GCAATGGCGGGCGTGGGTCG
CAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCGTCGTCATCGGCTTCGCCAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTC
GCCGGCGTAGTCGGCGCCGCGTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTTGCCACCTC
CGCCTCGTCAGCGCTGGTGGCCTGGGCGATTACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATTCATATTGGTGGGT
ACCGCGGATGGCGCCTCAGGGTGCTGGAGGCGTTCGTGATCATTTTGATGTTCACGCAGCTGCTCTACGTGCTCGCGCTG
CACTCCGGCCTCTTCGGGAACCAGTTTGGCAACCATGCTGGTGCTGGTGGGTACGGAGCCGAGCACGGCGCGTATGGCGC
------CG---GCGACCCGCACAA------CAAGGGCATGGGCACCGGCGGCGTCGCGAGGGT-----------------
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>chr5B_990
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--------------------------------------------AGGCAGTA--------GCAATGGCGGGCGTGGGTCG
TAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATCGTCATCGGCTTCGCCAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTA
GCCGGGGTCGTTGGCGCCGCTTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTCGCCACCTC
TGCGTCCTCCTCGCTGGTGGCGTGGGCGGTCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGT
ACCGCGGGTGGCGCCTCCGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTCACGCAGCTGCTGTACGTGATAGCGCTG
CACTCTGGCCTCTTCGGCAACCAGTTCGGTGGTAACCATGCTGGCG---GGTATCCGGCGGAGCA---CGCGTACGGCGC
------CG---GCGACCCGCACAA------CAAGGGAATGGGCACCGGCGGCGTCGCCAGGGTCTGAATCGGGTA-----
----------TGCTCCATCGCCTCAATCGGCGGTGACAGTGACGGGCGGATAATAAGGTGTATGTATGTATGTGTGTGTG
TG------------------------------------------------------------------------------
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>chr4A_990
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--------------------------------------------AGGCAGCA--------GCAATGGCGGGCGTGGGTCG
CAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATAGGGTTCGCGAGCTGGAACCTCAACC
ACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTC
GCCGGGGTCGTGGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTC
CGCGTCCTCCTCGCTGGTGGCCTGGGCGATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGT
ACCGAGGGTGGCGCCTCCGGGTGCTGGAGGCGTTCGTCATCATCCTGGCCTTCACGCAGCTGCTCTACGTGCTGGCGCTG
CACTCTGGGCTGTTTGGCAACCAGTTTGGTAACCATGCTGGTGGA------TACGGCGCGGAGCACGGCGGGTATGGCGC
------CG---GCGATCCGCACAA------TAAGGGCATGGGCACCGGCGGCGTCGCCAGGGTCTGAATCGGCCGGGTAG
ATGCC---------------------TCGGCGGCGACAGTGACAGGCTGATAATAAGGTGTATGTATAAA----------
----TGTGTGTTCCGTCACGTATGGTGGGAGCGTACGTTGTATCCATACATGGTGTGCATGTACTCTTTTCTTTTTTGTA
GGGACGACGCGCGTGCATGCGTACATGTGGTAGTACTGCAGGATGG----TTCTTCTTAGTGTGTGTGTGTGTGTGTGTG
TGTGTTTATTATCTAGTCCGAGATCGAGATAGAGATCGATCAGTCCATGCTTC---------TTCTCCGACCAGACCACA
GCAG----TGTCTGGATGTGGATGAATGGCAGCACTTGTTTCATTTATCACTACTACTCTAC------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------S-S---S----------------S------S----SSSS----------SSSSSS-S-S-S--SS-S-----
--------S--S----------------S--------SS-S-SSS-S---S--SSSSS---------S---S---SSSSS
S------------------S------------------S-----S-S---------------S--S-S--SSSSS--SSS
SSSSS-SSSSSSSSSSSSSSSSSSSSS----S----S---S---------------S------SS---------------
-----S-S----------S--SSSSSSSSSSSSSSSSSSSS--S------------------------------------
------------------------------------------------S--------------S----------------
----------------------------------------------S-----------------------S---------
--S--------------------------------------------------S--------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------S-----------------------------------------------------
------------------------------------------------------S---------------------SS-S
-SSSSSSSSS-----------S-SSSSSSS---------------------------------------S----------
--SS-------------S---------S---------------S--S------------S-SSSSSSS-SSSS-SSS---
----------------S-----------------S-----------SSSS---------------S--------------
------------S------------S----S--------------------SSSSSSSSSSS--------------S-SS
---SSSSS-------S--------------S----------S-----SS-------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_25
-----CGTGGACTGTGGCAAAGTTG-------------------------------------------------------
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>reverse_1926
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-----GCATGTCTGGGTGTGGATGA-------------------------------------------------------
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