>input_sequence_76673
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---------------------------------------------------------ATGGAGAGCAAGAGATCGCCGTG
CGCGCCGGCCGTGGCGGTGCTCCTCCTCCTC---CTGTTCGTCCTCATGCCGGACGAGGCGGACGCCCAGGTGTTCTGCC
GGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACTTACCCCGGCGCCAACCCGGCGGTGCCCCCGCGGCGG
CCACTTCTTCTCAACGCCTCATCGTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACGAGCACAGCGCCAGCGGCGG
CCATGGCGGCGACCACGGCGGCAGCCA------TGGCGGCGAGCACGGGAGCAGCCACGGCAGCGAGCACGGGGGCAGCC
ACGTCAGGCGCCGCCATGGGCACCAGCACCACGTAGGAGGCGCGGACCCGTACGACACGGCGTGCTGCCGGCGCCTCATG
GGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGGTCAAGCACTCCATCAAGCT
CACCCCAGTCCCAGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGA----------------------------
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>chr5B_1_TraesCS5B01G178500
CGGCTGCAGATGCTCTTAGAGCAGTGCAATTTGAAATCTAAGTTATTTGGTTTTATAACGCAAACATATGGAATCAGGAG
GAGGTGCTTTGCCTGCCGAAGCAGTTTGGAAGAACATATAGATTCTGCAGCTTTAAGCCTGCAGATTCCTTACCACTGCA
AATGAGCAACAGAAAAGCATTTAGTTTTCATGTATTAAAACAATGGAACTAAAGAAATGCTAGAATTAGCCTGCGATTGT
TCTTAG--AGTTGGCCATATCATCTGAAGTCGTGTCATGCACA-----TATGTGCCTAGAAATACCGGCAAAAACTGTGG
TCTGAAGTTGTCTCTAGTTCTCAGAGATGCAGATGAACATTCTAACAACAGTTCCGGACTGGCAGAACCGCTGCTTTCTG
AAGAAG------AAAAACCTATCGCTCACAAAATTTCAGGAATATA--TAGGCTGCTGCTATGACTCAGACCAAAACGAT
CATTTTTTTTGCCTGTTAAACGAGAACAGTCTCATGTTCTCGAAAACAATCTTCAGATGCAACAGAGCCCGTCAGTGTAT
CAGATGTAACTCACAAAAATTTAGGAAATACTATATGTTTGTGCTATGACTCAGCCAAAGAAACTGTCACTTTTTGGCCG
ATAAATCAGTCTCATGTCCTGCAAAAATGCCCT--TGCAGAGGATTCAAAGCTTGTTTCAATCACTGCAAAATTTCTGCA
ACTCCTCCACTGCATCCTGAAAACGAACCTCAGGTCAACAAGGTCAAGTGTCAAGTGGTCACAGCTCAAGCATGATCAAC
CTATAAATCACTGCAACAAATCGGCCTCGCAAACCGTAACCATGTCACAATGCCATCCTAACCCCTACTGAACATATGCC
CCGGATCAGCGTCACCTAGCTACTTAAGCGCCCCTGAAATGCCACCCAGATCATCATCCGCTCCAAAGCCAACACAGCAG
CAGCAGCTGTCAGTAACCAAGGGACAGCCAGCCCAGGAAGCAGACAGAGCGGCAGCAATGGAGAGCAAGAGATCGCCGTG
CGCGCCGGCCGTGGCGGTGCTCCTCCTCCTC---CTGTTCGTCCTCATGCCGGACGAGGCGGACGCCCAGGTGTTCTGCC
GGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACTTACCCCGGCGCCAACCCGGCGGTGCCCCCGCGGCGG
CCACTTCTTCTCAACGCCTCATCGTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACGAGCACAGCGCCAGCGGCGG
CCATGGCGGCGACCACGGCGGCAGCCA------TGGCGGCGAGCACGGGAGCAGCCACGGCAGCGAGCACGGGGGCAGCC
ACGTCAGGCGCCGCCATGGGCACCAGCACCACGTAGGAGGCGCGGACCCGTACGACACGGCGTGCTGCCGGCGCCTCATG
GGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGGTCAAGCACTCCATCAAGCT
CACCCCAGTCCCAGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGACCACGGA-CGCCCCGCCACTTCCCACAA
TTTCATTTTACTCAAAACGTAGCAGCCTCTGCAGCAGCAATTTTCCATTTTCCTGGTCTAGCCTAACAATTCTGGGATTT
ATTTACATTATATAGTTCTGTTCTGGATTATTT-TTCGCCCTCTCA-GATTAGTAGGGACCTTTTTTTTCCACTATAT--
--GATCAATAGTGAA-TTGGCATTCTCCACACACACTGGTGAAATTTCTGTGGT--------------------------
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--------AGTGCAAACTTATCTTACAAT----------------------TTTTTTAAAACCATAATAATCTTAAACCT
CAATATTCCAATGCCT-GGCAATGACCTCTTTTTATAAAAG---AGTGCTATTTGTTGATGCTAAACACATCAAAGTTTA
TAAAACTGTCCTTTATGAAAACTAAACATGGTATTCTAGGATGAAAACGCAGCCTCAACTTGGGCCCCTTAGGTATAG-A
AATTATGGCTATCTCTGAACTTACTGAAAACAAGAAAAGTACAGTAATACTCTGGACTCCAGAGCACGGGTAACTGAAAT
ATGACAGGAGCACATTATATTCACATAAAGC-AACGCAAAAAATTCTGAGACACGAATAACAAGAAGACACACGATCGAG
CTTCCATTATGAATTTCAATAGCAGATTCGAATTAGATGATCATGTACATATTACACGGTACATATAAGGCTCAACCAGA
TTAATCTA--GAGGGGAAGACTGTACAATTTCCGACAAAA-TTGGAGATGAACACATCTCCTGATCACAAACTCACCCTG
ACATCGCTCAGAAAGATGAAAACCTCAAT-GTGTTGAGGCCTCAAAGTTTCTCTAGTTCATGTTCCATCGAAGCAAAGTC
GAAGCCTTCCCAATTAAGTTCTGCATCCAACTCGAACATTGGCATCGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGT
CGTCACCAGGCGGCTCGCCTGTTGTGTCGACGAAGTCATTGACAGGAAACATATCTGCCAGCCTTGAAATATCATCCAGT
GAGAGT
>chr5D_1
CGGCTGTAGATGCTCTTAGAGCAGTGCAATTTGAAATTTAAGTTATTTGGTTTTATAACGCAAACATATGGAATCAGGAG
GAGGTGCTTTGCCTGCCGAAGCAGTTTGGGAGAACATATAGATTCTGCAGCTTTAAGCCTGCAGATTCCTTACCACTGCA
AATGAGCAACAGAAAAGCATTTAGTTTTCATGTATTAAAACAACGGAACTAAAGAAATGCTAGAATTAGCCTGCGATTGT
TCTTAA--AGTTGGCCATGTCATCTGAAGTCGTGTCATGCACA-----TATGTGCCTAGAAATACCGGCAAAAACTTTGG
TCTGAAGTTGTCTCTTGTTCTCAGAGATGCAGATGAACATTCTAACAACAGTTCCGGACTGGCAGGACCGCTGCTTTCTG
AAGAAG------AAAAACCTATCGCTCACAAAATTTCAGGAAT--ATGTAGGCTGCTGCTATGACTCAGACCAAAACGAT
CAC-TTTTTTGCCTGTTAAACGAGAACAGTCTCATGTTCTCCAAAACAATCTTCAGATGTAACAGAGCCCGTCAGTGTAT
CA-----------CAAAAATTTAGGAAATACTATATGTTTGTGCTATGACTCAGCCCAAGAAACTGTCACTTTTTGGCCG
ATAAATCAGTCTCATCTCCTGCAAAAATATGTCCCTGCAGGGGATTCAAAGCTTGTTTCAATCACTGCAATATTTCTGCA
ACTCCTCCACTGCATCCTGAAAACGAACCTCAGGTCAACA-GGTCAAGTGTCAACTGGTCACAGCTCAAGCATGATCAAC
CTATAAACCACTCCAACAAATCGGCCTCGCAAACCGTAACCATGTCACAGCGCCCTCCTAACCCCTACTGAAC--ATGCC
CCGGATCAGCGTCACGTAGCTACTTAAGCGCCCCTGAAATGCCACCCAGATCATCATCCGCTCCAAAGCCAACAC---AG
CAGCAGCAGCATCAGTCAGTAA-----CCAGCTCGGGAAGCAGACAGAGCGGCAGCAATGGGGAGCAAGAGATCGCCGCG
CGCGCCGGCCGTGGTGGTGGTAGTGGTGCTGCTGCTGTTCGTCCTCATGCCGGACGAGGCGGACGCCCAGGTGTTCTGCC
GGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACCTACCCCGGCGCCAACCCGGCGGTGCCGCCGCGGCGG
CCACTGTTGCTCAACGCGTCCTCGTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACGAGCACAGCGCCAGCGGCGG
CCATGGCGGCGA------------------------------GCACGGGAGCAGCCACGGCAGCGAGCACGGGGGCAGCC
ACGTGAGGCGCCGCCACGGGCACCAGCACCACGTAGGGGGCGCGGACCCGTACGACACGGCGTGCTGCCGGCGCCTCATG
GGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGGTCAAGCACTCCATCAAGCT
CACCCCGGTCCCCGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGACCACGCCCCGCCCCGCCCCTTCCCACAG
TTCCATTTTACTGAAAACGTAGCAGCCTCTGCACCAGCAATTTTCCATTTTC-TGGTCTAGTTTAACAATTCTGGGATTT
ATTTACATTATATAGTTCTGTTCTGGATGCTTTTTTCTCCCTCTCATGACTAGTAGGGACCTTTTTTTTTCCATA-----
ATGATTAATAGTGAACTTGGCATTCTCCACACGC--TGGTGTAATTTCTAAATAGTACTTCCTCCGTCCGAAAAAACTTG
TCCCAAGCTTGTCCATCAAATGGATGTATGTTGCACTAACTTGGAGCTAGATACATCTATTTGAGGGACAAGCTTTTCGG
ACGAAGAGAGTAAAAACTTATCTTTCTGTCCGTTTGGTTTGGCAGTACAACTTTTTAAAAACCGCAGTAATCCTAAACCT
CAGTATTCCAGTGCCTGGGCAATGACCTCTTTTTATAAAAAAACAGTGCTATTTGTTGATGCTAAACACATCAAAGTTTA
TAAAACCGTGGTTTCTGGAAAACTCCAAAA--ATACTTGGATGCAAACGCAGCCTTAACTTGCCCCCCTTGGTATTGAAA
ATTTATGGCAATCTCAGAACTTATTAGAAACAAGAAAAGTACAGTAATACTCTGGACTCCAGAACACAGGTCACTGAAAT
ATGACAGGAACACATTATATTCGCACAAACC-AACACAAAATATTCTGAAACACAAATAATGAAAAATAGAA-GATGGAG
CTTCCATTATGAACTTC-ATAGCAGATTCAAATTAGATGATCATGTACATATTACACGGTACATATAAGGCTCAACCAGA
TTAATCTA--GGGGGGAAGACTGTACAATTTCCGACAAAAATTGGAGATGAACACATCTCCTGATCACAAACTCACCCTG
ACATCTCTCAGAAAGACGAAAACCTCAATGGTGTTGAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCAAAGTC
GAAACCTTCCCAATTAAGTTGTGCATCCAACTCGAACATTGGCATCGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGT
CGTCACCAGGCGGCTCACCTGTTGTGTCGACAAAGTCATTGACAGGAAACATATCTGCCAGCCTTGAAATATCATCCAGT
GAGAGT
>chr5A_62
-------------------------------------------------------------AAACATATGAATTCAGGAG
GAGGTGCTTTGCCTGCCGAAGCAGTTTGAAAGAACATATAGATTCTGCAGCTTTAAGCCTTCAGATTCCTTACCACTGCA
AATGAGCAACAGAAAAGCATTTAGTTCTCATGTATTACAAAAACGGAAACAAAGGAATGCCAGAATTAGCCTGGGATTGT
TCTTATATAGTTGGCCATATCATTTGAAGTCGTGTTATGCATATACTGTATGTTCCAAGAAATACCGACAAAAACTGTGG
T-TGAAGGTGTCTCTAGTTCTCAGAGATGCAGATAAACATTCCAACAACAGTTTCGGACTCACAGAACCGCTGCTTTCTG
AAGAAAAGAAGAAAAAAACAGTCGCTCACAAAATTTCAGGAAT--A--TAGGCTGCTGCTATGACTCGGCCCAAAACGAT
CAC-TTTTTTGCCTGGTAAATGAGAACAGTCTCATGTTCTCCAAAACAATCTTCAGAGGCAACAGAGCCCGTTAG-----
-A-----------CAAAAATTTAGGAA----TATATGTTTGTACTATGACTCAGGCCAAGTAACTGTCACTTTTTGCCCG
ATAAATCAGTCTCATGTCCTGCAAAAATATGCCCCTGCAGAGGATTCAAAGCTTGTTTCAATCACTGCAAAAATTCTGCA
A---------------------------CTCAGGTCAACA-GGTCAAGTGTCAACTGGTCACAGCGCAAGCATGATCAAC
CTATAAATCACTCCGACAGATCGGCCTCGCAAACCGTAACCATGTCACAGCGCCCTCCTAACCCCTACTGAAC--ATGCC
CCGGATCAGCGCCACCTAGCTACTTAAGCGCCCCTGAAATGCCACCCAGATCATCATCCGCTCCAACGCCAACAC---AG
CAGCAGCAGTCAGTAACCAAGGGGCAGCCAGCCCGGGAAGCAGACAGAGCGGCAGCAATGGAGAGCAAGAGATCGCCGTG
CGCGCCGGCCGTGGCGGTGCTCCTCCTCCTGCTGCTGCTCGTCCTCATGCCGGACGAGGTGGCGGCCCAGGTGTTCTGCC
GGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACCTACCCCGGCGCCAACCCGGCGGTGCCGCCGCGGCGG
CCACTGCTGCTCAACGCGTCGTCCTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACGAGCACAGCGCCAGCGGCGG
CCATGGCGGCGACCACGGCGGCAGCAGCCACGGTGGCGGCGACCACGGAGCCGGCCACGGCAGCCAGCACGGGGGCAGAC
ATGTCGGCCGCCGCCACGGGCACCAGCACCGCGTAGGGGGCGCGGACCCGTACGACACGGCGTGCTGCCGGCGACTCATG
GGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGGTCAAGCACTCCATCAAGCT
CACCCCGGTCCCAGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGACCACGC---------------CCCACAA
TTTCATTTTACTCAAAACGTAGCAGCCTCTGCAGCAGCAATTTTCCATTTTCCTGGTCTAGCCTAACAATTCTGGGATTT
ATTTACATTATACACTTCTGTTCTGAATGTTTTTCTCTCCCTCTCATGATTAGTAGGGAACTCCTTTTTCCACTATATAT
ATGATTAATAGTGAACTTGGCATTCTCCACACAC--TGGTGTAATTTCT----T--------------------------
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--------AGTAGAAACTTATCTTTCAGTCTGTTTGGTTTGGCAGTACAATTTTTAAAAAACCGTAGTAATCTTAAACCT
CAGTATTCCAGTGCCTGGGCAATGACCCCTTTTTATAGAAATAGTTC----TTTGTTGATGCTAAACACATCAAAGTTTA
TAAAACCGTGGTTTCTGAAAAACTCCAAAA--ATACTTGGATGCAAACGCAGCCTTAACTTGGAACCCTTAGTATAGAAA
AATTATGGCAATCTCTGAACTTATTAGAAACAAGAAAAGTACAGTAATACTCTGGACTCCAGAGCACAGGTCACTGAAAT
ATGACAGGAACACATTATATTCGCACAAACCAAACACAAAAAATTCTGAAACACAAATAACGAAAAATAGAAGATGGA--
----CATTATGAACTTC-ATAGCAGATTCAAATTAGATGATCATGTACATATTACACGGTGCATATAAGGCTCAACCAGA
TTAATCTAAGGGGGGGTGGACTGTACAATTTCCGACAAAA-TTGGAGATGAACACATCTCCTGATCACAAACTCACCCTG
ACATCTGTCCGAAAGATGAAAACCTCAATGTTGTCGAGGCCT-AAAGTCTCTCTAGTTCACGTTCCATCGAAGCAAAGTC
GAAACCTTCCCAATTAAGTTCTGTATCCAACTCGAACATTGGCATCGGTAGATGACTGATGTCTGCCAGCCCGATGTAGT
CGTCACCAGGCGGCTCACCTGTTGTGTCGACAAAGTCATTGACAGGAAACATATCTGCCAGCCTTGAGATATCATCCAGT
GAGAGT
>SNPs
------S------------------------------S------------------------------------------
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-------------------------------------------S------------------------------------
-----S--------------------------------------------------------------------------
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-------------------------------------------SS-----------------------------------
--SS-------------------------------------S--------------------------------------
--SSSSSSSSSSS-------------------------------------------S-----------------------
----------------------------SSS-S-----------------------------------------------
----------------------------------------S-------------S-------------------------
------------S------------------------------------SS---S------------------SS-----
---------------------------------------------------------------------------SSS--
-------S---------------S----------S---------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------S--------------------------S---------
-----S--S--------S--S-----------------------------------------------------------
-------------------------SS-----------------------------------------------------
----------------S--------------------S------------------------------------------
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------S--------------------------------------------------SS----------S----------
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----------------------------SS-------S------------------------------------------
-----S----------------------------SS-----S-------SSSS---------------------------
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-----------SS-----------S--S----------------------------S------S--S-------------
--S-------S-----------------------------S---------------------------------------
------S--SS---S------SSSSSS-SSSS--S--S-----S-----------S-------S--------SSS-SS--
---------S-------------S-SS----------------------------------------S---S--------
---------S------------S--S---S-----S-------------S----S------S-S--SSSSS-S---S---
-------------S---S-----------S--------------------------------------------------
-----------S--------------------------------------------------------------------
-----S------------------------------------------------------S-------------------
---S----------------------------------------------------------------------------
----------------S--------------S------------------------------------------------
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>forward_958
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-----------------------------------------------------------GCTCCAAAGCCAACACAGC--
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>reverse_2118
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-------------------------------------AGGATGAAAACGCAGCCTCA-----------------------
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