>input_sequence_76672
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-----------------------------------------------------ATGTATGGCCACTTGATCCTGTCTGCG
GCGCGGCGTGGC-----GCGGCGCATGGTCCTCAATCATGCCCCCTGACCCTGAGCACTGTGTTATCAAGGGTCCATCTA
TGCATGATCACACTGGTGA-GTAAGTATTCTTCTCCCCTCTTAATCCTTAT-ATCATAATAAGCCAGTAATACAATAGTA
GGAGCATGCATTTGGACTCACAAGTGTCCCTTCTAAGGCTCAAAAGTGTTGACTGCATGTGGGCTGGTGGGGTGGGGTGG
GGTGGGGGATGAGGGGCTGTCCTGAGATACTGCAGCACATATCCTTGCCCCTTCTATATAAACCAAGATTTGCACCACTG
CATCCCATCATACATACCAGCATCATCTCAAGAGGAGAGCCTTG-------ACCTGAACCTAAACCTCTCGCATTGCTCC
TGTTCTGGTGGATGCCATGGAGCAGGGGAAGAAGAAGCACGCGGGGAGGCTGCAGAAGGTTCTGAGGGAGCAGAAGGCCA
GGGTCTACATCATCCGCCGCTGCGTCGTCATGCTTCTCTGCTGGAGTGACTGA---------------------------
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>chr5B_1_TraesCS5B01G176900
TCTTCTTGATCGCAGTTACCATTGGTCATTGCCTGGTAGTTGATTAGTTTCCTAAT-CCTAGTACCCTATTGTTTAGTAT
-GTGAGTGTTCAATTTATCAGCTTGTCCCCTCCGCAGTGGCCTATTCGAGAGTAGTTGCATGGCTAGTGTAGGAGCCTCG
ATTGTGTCGCTTCAACAAGTTCAAAGGGCTACATATTTGGGTTCTGTCTTATTGCATCAAGTTACTTTAGCCGCCCCCAT
GATTGTGTCATTAGTGGCGCCTAGTGTCAACCCAAGCCCTGTTTGTTTGTCATGGAATGAGATCGGGAATAATGTGCAAA
TTCAAGCTCCCATCAATATT-GTGACAAGAGCAAATTTTCACTTGCATTTATTTGTAGATTCATAT-----TTACTACCT
CCGTTTGGAAATAACTGACGTAGTTTTAGTTCAAATTTGTGAACT----AAAACTAAAACCACTTCCGTTATTTCCAAAC
GGAGGCAGTACCATTTTCAACCACCAGATTGGCAGGCGTGTTCCGAGAATTCCTTTGGCTTTGTGCTAATATATGTATTC
TTATTAAGTTGTCGGAATACTCCGACCTGTCCTTTCATCCCCATAAAGGATAATATACATACTCTGTGCCAGTCTAGTCT
AGTGTGAGGAAACCCTGGCATTATCCTGAGAGACAGAGAGAGAACTAGCCAGCATGGATCTGATTATTGTTGTTGTATCC
AGCATGAACAATGCACATGACAAAACTGCAGGTAAGGAGATGAAAGAAAGAACTCCCACCCACGGTTTTTCAGATGTCTG
TGGATCTGATTAGTCCCTTCACTGGCTTTCAGATGTCCTAACATGCTGTGGTGTGCCGGCGCCCTTTTAGCAGTTTTAAG
GGCTAAGCAGCAGCAGCAGCAGCAGCCCCAAACTGCCGTTTT-CTGGTAAGCTTGACTGCTTGAGGACCATGAATAGCCT
TTCTTGGAGCCATTAAACAACCAACCCACGGTTGCCTTTCTTGATTGCAGGGCATGTATGGCCACTTGATCCTGTCTGCG
GCGCGGCGTGGC-----GCGGCGCATGGTCCTCAATCATGCCCCCTGACCCTGAGCACTGTGTTATCAAGGGTCCATCTA
TGCATGATCACACTGGTGA-GTAAGTATTCTTCTCCCCTCTTAATCCTTAT-ATCATAATAAGCCAGTAATACAATAGTA
GGAGCATGCATTTGGACTCACAAGTGTCCCTTCTAAGGCTCAAAAGTGTTGACTGCATGTGGGCTGGTGGGGTGGGGTGG
GGTGGGGGATGAGGGGCTGTCCTGAGATACTGCAGCACATATCCTTGCCCCTTCTATATAAACCAAGATTTGCACCACTG
CATCCCATCATACATACCAGCATCATCTCAAGAGGAGAGCCTTG-------ACCTGAACCTAAACCTCTCGCATTGCTCC
TGTTCTGGTGGATGCCATGGAGCAGGGGAAGAAGAAGCACGCGGGGAGGCTGCAGAAGGTTCTGAGGGAGCAGAAGGCCA
GGGTCTACATCATCCGCCGCTGCGTCGTCATGCTTCTCTGCTGGAGTGACTGATCTGGGCTCATTAGAGGCACAGCCACA
ATGTTCCTTCCCTTCATTAATTCTCTCCTGCTTTCCTCTCCATGTTTTTTTTCACATTGGCCTTTACCCTATGATGAAGG
TTCTCTGTTTTTCTTGCCTCCTTGCAATGGCAAGGGTGACTGATGTTGTAAAGTTGGAGGGTGTTAATACGGACTAACAG
TATGCTTTTTCCTCTGGAACTCGATC-TTTGCGGCTGCTTGAGCTTCACAAAGGCCT-GAGTTCAGAACATAATACTTGC
AAAAATAGTATGTTCATATGGGAGCAATCTGCTTGCATTTCTGGCCTCTGAGTAGTATTCTTGATATAGTAAGCAGGCAT
GGACGCATG--------CCTTGGTTTAATAAAATAGAACATATCCTCTCTAGGGAAAGGTAGTGCATGTGCAGGGCTACA
AGAGGGGCTGAAAGGTTAGGTTCCTTCTGATTAAACTACATAAAAATTACGTTATAAACTGGA-AAAA---AAACACCCC
AGCCAAAGTTTCACATTGTCGGTGCGGTATAAAACAGTGCTGTAGATTTTGTTCATC-GCTAGATGTGGTACGCCAATGG
AGTTACTAGAGAGTTAGAGCTTTGGGGAAAAACTTTGGAATCGAAAGGTTTTAAGCTTAGTAGAACGGAAACTGAGTACA
TGAGGTGCGGTTTCAGTACTACTAGGCACGAGGAGGAGGAGGAGGAGGAGGAGGAGTGTTATGGCGCTGCTAGAAGGAGG
GCGCGAGAGGGCCGACCGGGGGCCTTTCTGCCCACGGCCGGGCAAGAGGGAAGGGATTTCCTTCTTAATTCTTGCTTGAT
TAGATTGATACATCTCCTCTCTTTATATAGAGAGGTTTACTTGACTCCCAAGCAAGGCTTACTTGAACCCTAAGCAAGCG
ACCCTTATCTCTAATTAACCCTAAGACTAACGGGCCCATTAAGCCCATTACGTACTCTAACACTACACCCCACCTGGACA
TGCAGCTTGTCCTCGAGCTGCAGCCTAA
>chr5A_1
TCTTCTTGATCGCGGTTACCATTGGTCATTGCCTGGTAGTTGATTAGTTTCCTAATGCCTAGTACCCTATTGTTTAGTAT
AGTGAGTGTTCAATTTATCAGCTTGTCCCCTCCGCAGTGGCCTATTCGAGAGTAGTTGCATGGCTAGTGTAGGAGCCTCG
ATTGTGTCGCTTCAACAAGTTCAAAGGGCTACATATTTGGGTTCTGTCTTATTGCATCAAGTTACTTTAGCCGCCCCCAT
GATTGTGTCATTAGTGGCGCCTAGTGTCAACCCAAGCCCTGTTTGTTTGTCATGGAATGAGATCGGGAATAATATGCAAA
TTCAAGCTCCCATCAATATT-GTGACAAGAGCAAATTTTCACTTGCATTTATTTGTTGATTCATAT-----TTACTACCT
CCGTTTGGAAATAACTGACGTA-------TTCAAATTTGTGAACT----AAAACTAAAACCACGTCTGTTATTTCCGAAC
GGAGGCAGTACCATTTTCAGCCACCAGATTGGCAGGCGTGTTCCCAGAATTCCTTTGGCTTTGTGCTAATATATGTATTC
TTGTTAAGTTGTCGGAATACTCCGACCTGTCCTTTCATCCCCATAAAGGATAATATACATACTCTGTGCCAGTCTAGTCT
AGTGTGAGGAAACCCTGGCATTATCCTGAGAGACAGAGAGAGAACTAGCCAGCATGGATCTGATTAGTGCTGTTGTATCC
AGCACGAACAATGCACATGACAAAGCTGCAGGTAGGGAGATGAAAGAAAAAACTCCCGCCCGCGGTTTTTCAGATGTCTG
TGGATCTGATTAGTCCCTTCACTGGCTTTCAGATGCCCTAACATGCGGCAGTGTGCCGGCGCCCTTTTAGCAGTTTTAAG
GGCTAAGCG------------GCAGCCCCAGACTGCCGTTTTTCTGGTAAGCTTGACTGCTTGAGGACCATGAATGGCCT
TTCTTGGAGCCATTAAACAACCAACCCACGGTTGCCTTTCTTGCTTGCAGGGCATGTATGGCCACTTGATCCTGTCCGCG
GCGCGGCGCGGTGCGGTGCGGCGCATGGTCCTCAATCATGCCCCCTGACCCTGAGCACTGTGTTATCAAGGGTCCATCTA
TGCATGATCACACTAGTGAAGTAAGTATTCTTCTCCCCTCTTAGCCCTTATCATAATAATAAGCTAGTAATACAATAGTA
GGAGCATGCATTTGGACTCACAAGTGTCCCTTCTAAGGCTCAAAAGTGTTGACTGCATGTGGGCTGGTAGGGTGGGGTGG
GGTGGGGGATGGGGGGCTGTCCTGAGATACTGCAGCACATATCCTTGCCCCTTCTATATAAACCAAGATTTGCACCACCG
CATCCCATCATACATACCAGCATCATCTCAAGAGGAGG-GCCCTGACCTGACCCTGAACCTAAACCTCTCGCATTGCTCC
CGGTCTGGTGGATGCCATGGAGCAGGGGAAGAAGAAGCATATGGGCAAGCTGCAGAAGGTCCTGAGGGAGCAGAAGGCCC
GGCTCTACATCATCCGCCACTGCGTCGTCATGCTTCTCTGCTGGAGTGACTGATCTGGGCTCATCAGAGGCACAGCCACA
ATGTTCCTTCCCTTCATTAATTCTCTCCTGCTTTCCTCCCCATGTTTT-TTTCACATTGGCCTTTACCCTATGATGAAGG
TTCTCTGTTTTTCTTGCCTCCTTGCAATGGCAAGGGTGAATGATGTTGTAAAGTTGGAGGGTGTTAATACGGACTAACAG
TGTGCTTTTTCCTCTCGAACTCGATC-TTTGCGGCTGCTTGAGCTTCACAAAGGCCTCGAGTTCAGAACATGATACTTGC
AAAAATAGTATGTTCATGTGGGAGCAATCTGTTTGCATTTCTGGCCTCTGAGTAGTATCCTTGATATAGTAAGCAGGCAT
GGACGCATGGTGCTCTGCCTTGGTTTAATAAAATAAAACACATCCTCTCTAGGGAAAGGTAGTGCATGTGCAGGGCTGCA
AGAGGGGCTGAAAGGTTAAGTTCCTTTTGATTAAACTACATAAAA-TTACGTTCTAAACTGAAAAAAAAAGAAACACCCC
AGCCAAAGTTTCACATTGTCGGTGCCGTATAAAAGAGTGCTGTAAGTTTTGTTCATCAGCTAGACGTGGTACGCCAATGG
AGTTACTAGAAAGTTAGAGCTTTGGGGACAAACTTTAGAATCGAAAGGTTTTAAGCTTAGTAGAATGGAAACTGAGTATA
TGAGGTGCGGTTTCAGTATTACTAGGCACGAGGAGAAGGAGGAGGTGG--------------------------------
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>chr5D_1
TCTTCTTGATCGCGGTTACCATTGGTCATTGCCTGGTAGTTGATTAGTTTCCTAATGCCTAGTACCCTATTGTTTAGTAT
AGTGAGTGTTCAATTTATCAGCTTGTCCCCTTTGCAGTGGCCTATCCGAGAGCTGTTGCATGGCTAGTGTAGGAGCCTCG
ATTGTGTCGCTTCAACAAGTTCAAAGGGCTACATATTTGGGTTCTGTCTTATTGCATCAAGTTACTTTAGCCGCCCCCAT
GATTGTGTCATTAGTGGCGCCTAGTGTCAACCCAAGCCCTGTTTGTTTGTCATGGAATGAGATCGGGAATAATATGCAAA
TTCAAGCTCCCATCAATATTTGTGACAAGAGCAAATTTTCACTTGCATTTATTTGTTGATTCATATTTATATTACTACCT
CCGTTTGAAAATAACTGACGTAGTTTTAGTTCAAATTTGTGACCTAATAAAAACTAAAACCACTTCCGTTATTTCCGAAC
GGAGGCAGTACCATTTTCAACCACCAGATTGGCAGGCATCTTCCGAGAATTCCTTTGGCTTTGTGCTAATATATGTATTC
TTGTTAAGTTGTCGGAATACTCCGACCTGTCCTTTCATCCCCATAAAGGATAATATACATACTCTGTGCCAGTCTAGTCT
AGTGTGAGGAAACCCTGGCATTATCCTGAGGGACAGAGAGAGAACTAGCCAGCATGGATCTGATTAGTGTTGTTGTATCC
AGCACGAACAATGCACATGACAAAACTGCAGGTAAGGAGATGAAAGAAAAAACTCTCACCCACGGTTTTTCAGATGTCTG
TGGATCTGATTAGTCCCTTCACTGGCTTTCAGATGCCCTAACATGCCGCAGTGTGCCGGCGCCCTTTTAGCAGTTTTAAG
GGCTAAGCG------------GCAGCCCCAGACTGCCGTTTTTCTGGTAAGCTTGACTGCTTGAGGACCATGAATGGCCT
TTCTTGGAGCCATTAAACAACCAACCCACGGTTGCCTTTCTTGCTTGCAGGGCATGTATGGCCACTTGATCCTGTCCGCG
GC---------------GCGGCGCACGGTCCTCAATCATGCCCCCTGACGCTGAGCACTGTGTTATCAAGGGTCCATCTA
TACATGATCACACTGGTGAAGTAAGTATTCTTCTCCCCTCTTAGCCCTTAA---CATAATAGGCTAGTAATACAATAGTA
GGAGCATGCATTTGGACTCACAAGTGTCCCTTCTAAGGCTCAAAAGTGTTGACTGCATGTGGGCTGGTAGGGT-----GG
GGTGGGGGATGGGGGGCTGTCTTGAGATACTGCAGCACATATCCTTGCCCCTTCTATATAAACCAAGATTTGCACCACTG
CATCCCATCATACATACCAGCATCATCTCAAGAGTGAGAGCCCTGACCTGAACCTGAACCTAAACCTCTCGCATTGCTCC
CGGTCTGGCGGATGCCATGGAGCAGGGGAAGAAGAAGCAGGCGGGGAGGCTGCAGAAGGTCCTGAGGGAGCAGAAGGCCA
GGGTCTACATCATCCGCCGCTGCGTCGTCATGCTTCTCTGCTGGAATGACTAATCTGGGCTCATTAGAGGCACAGCCACA
ATGTTCCTTCCCTTCATTACTTCTCTCCTGCTTTCCTCCCCATGTTTT-TTTCACATTGGCCTTTACCCTATGATGAAGG
TTCTCTGTTTTTCTTGCCTCCTTGCAATGGCAAGGGTGACTGATGTTGTAAAGTTGGAGGGTGTTAATACGGACTAACAG
TATGCTTTTTCCTCTCGAACTCGATCTTTTGCGGCTGCTTGAGCTTCACAAAGGCCTCGAGTTCAGAACATGGTACTTGC
AAAAATAGTATGTTCATATGGGAGCAATCTGTTTGCATTTCTGGCCTCTGAGTAGTATTCTTGATATAGTAAGCAGGCAT
GGACGCATGGTGCTCTGCCTTGGTTTAATAAAATAAAACACATCCTCTCTAGGGAAAGGTAGTGCATGTGCAGGGCTGCA
AGAGAGGCTGAAAGGTTAGGTTCCTTCTGATTAAACTAAATAAAAATTACGTTATAAACTGAACAAAA---AAACACCCC
AGCCAAAGTTTCACATTGTCGGTGCGGTATAAGACAGTGCTGTAAAAAAATTTCATCAGCTAGACGTGGTACGCCAATGG
AGTTACTAGAAAGTTAGAGCTTTGGGGACAAACTTTGGAATCAAAAGGTTTTAAGCTTAGTAGAACGGAAACTGAGTACA
TGAGGTGCGGTTTCAATACTACTAAGCACGAGGAGGA-------------------------------------------
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>SNPs
-------------S------------------------------------------------------------------
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-------------------------------------------------------------------------S------
--------------------------------------------------------S-----------------------
----------------------------------------------------------------------------S---
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--S-----------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----S--------------------------------------------S------------------------------
-----------------------------------S----------S-SS------------------------------
--------SSSSSSSSSSSSS---------S--------------------------------------------S----
-------------------------------------------S--------------------------------S---
--------S--S--------------------------------------------------------------------
-------------------------------------------SS-------------------S---------------
--------------------------------------------------------------------S-----------
-----------S--------------------------------------------------------------------
-------------------------------------SSS-SSS------------------------------------
S-S------------------------------------S--------------------S-------------------
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--------------------------------------S---------S-------------------------------
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---------------S-------------------------------------------------------S--------
-------------------------------S------------------------------------------------
-----------------------------------S----S------------------------------------S--
-------------------------------------------------------------S------------------
--------------------------------------------S-------------------S---------------
----------S-----------------S---------------------------------------------------
---------------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1004
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------------------------CCCACGGTTGCCTTTCTTGA------------------------------------
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>reverse_2506
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-------------------------ACTAACGGGCCCATTAAGCC-----------------------------------
----------------------------
