>input_sequence_76668
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----------------------------------------ATGCTCACACGCACGCTAACTATCCATAGTGTAGCTAGAA
TGGAACAGCTGACGAGTGACGACTGTCAGCAGGAGGACGAGCTCAATCTTGGGCTCACCCTCCTCACCACGGCCGCGACG
GAGCCCGGCGTCGGCTTCTTCCTCTGCGTGTACTGCGACCGTAAGTTCCGCAGCTCGCAGGCGCTCGGCGGCCACCAGAA
CGCGCATAAGCACGAACGTAGCGTCGCCAAGCGCCGGCAGCTGATCGCTGCCGCGACGCGCGTGGGTGCGCG--------
-------TGCTGCGGCGCAGGACGAGAGGCAGCCCGGGTACCACCCCGGGGGCGGTGGCGATTTCATGTCTGCGGCTGGG
AAGGCGAGGAAGACTGCTGCTGGAAAGGCGCACAAGCACGACAGGAGCTCGCCGGAGTACGACGATGGCGCCGACAATGT
GGATTTGTCTATGGCTGGGAAGGCGAGGAAGACTGCTGCTGGAAAGGCGCACAAGCACGGCAGGGGCTCGTCGGAGTACG
GCGATGGCGCCGATGACATGGACTTGTCTCTCAGGCTATGA---------------------------------------
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>chr5A_1_TraesCS5A01G492700
TTGTATATCAATACACGTAACACCAAACTGGCTTCATCATAAAGTATATGTTCATGTTATATTTATTTAGCATTGTACTA
GATGTTAATATTTTTTTGATATAATATTTGTCAAACTTAGCAAATTTGTCTTAGACAAAGCTGAAATGCAAAGTAAAAAG
AAGCAGAGGGAGTACACGCTGGAATTAAAACTATCTTGTACGTGTATCAATGGACGCATCGTCTAAAATGAGTTATTCTG
CAGTAGTTATGGCCGTTGCATTATTTTTATATGAATATATGTTATCCGTTGCATTATTTTTATATGAATATATGCTAGCC
GTTGAACGATACAGAAGTTACCTTTACCGTCGCGGGAGAGTATCAGGTGATACCACCTCCTAAATGCTCCCACGATACCA
TTTCAAAAAAAATCTAATTTTAAATGTTTCAAAAAATTCTAAAAAATGTTGTGGATGTTCACATCGCATGGGTGTACAAC
CTCTACAAATTTCAGGTTCAAATACTAAATACAGATTGAGAAATAAAAAAAGACAAATCTAGATGTGAATAGTGGCGTTT
TGACTTTTGCCTTTTTCGACACTATTTATGCTGCTGTATTTGTCTTTTCTTTCTCAATGTATATTTTGAATTTGGACCTG
AAATTTTTAGGGGCTGGACATGTGATGTGAATATCCACAACTTTTTCAGAATTTTTTTTAATATTTAAAATTGAAATTTT
TGAAATGGTATCATGGGGTGGTATCATGTGATATTCTCCCTTACCGTCGCTATGGATCTGGCCGACCCCTTTCCCCTCAA
TCCTGGCTCAGCCGAGGCGTCCTTGAGCCGTTAGCAAATTGACGGCCAGCCGGAGACGTGCGCGTCCACCGGCTGCACTA
ACGTGCCCCCCGATGAACAGTGCAACACGCGTTAGGTGAGCAGCGGTAGCTGTCTATTTAAACCTTTGCTTAGCACAACA
ATTTCCATGGCGAGTTAAGCTCTGGTCGACTCTGTAGCTCATGCTCACACGCACGCTAACTATCCATAGTGTAGCTAGAA
TGGAACAGCTGACGAGTGACGACTGTCAGCAGGAGGACGAGCTCAATCTTGGGCTCACCCTCCTCACCACGGCCGCGACG
GAGCCCGGCGTCGGCTTCTTCCTCTGCGTGTACTGCGACCGTAAGTTCCGCAGCTCGCAGGCGCTCGGCGGCCACCAGAA
CGCGCATAAGCACGAACGTAGCGTCGCCAAGCGCCGGCAGCTGATCGCTGCCGCGACGCGCGTGGGTGCGCG--------
-------TGCTGCGGCGCAGGACGAGAGGCAGCCCGGGTACCACCCCGGGGGCGGTGGCGATTTCATGTCTGCGGCTGGG
AAGGCGAGGAAGACTGCTGCTGGAAAGGCGCACAAGCACGACAGGAGCTCGCCGGAGTACGACGATGGCGCCGACAATGT
GGATTTGTCTATGGCTGGGAAGGCGAGGAAGACTGCTGCTGGAAAGGCGCACAAGCACGGCAGGGGCTCGTCGGAGTACG
GCGATGGCGCCGATGACATGGACTTGTCTCTCAGGCTATGATCGACCTACTAGTTTGTCCCAGATCCACACCCAGCTTAC
TACTAGTTGACAGCGCGCATCCGCTACATGATTCGGTATGCCGAGGTCTTCTTTGGTGATTACATGTGAAACTGCTGCTA
TGCCTGCTTGTTTCAAGCTGTGTGTGTGTTGGATTCTTATGTTCTTTTTCC---GTTGAGTTTTTCCTCATGAAATTCCT
TGACCAGAAAGAAAGTTTGATCTTATGACCTTGCTAGTTGCTAGTGTGTTTTCGAGTGTTTATGTTGGGTTGGCTTTGTG
CATCGTAATTATGCAGAGGCCGGGTGTATGCTAGTGTGTTTTCGAGTGTTTATGTTGGGTTGGCTTTGTATCCTCTCGAT
GCTCTATTTGAGCCAATAAAATTCACCCTTTATCTAAAAAAGAAAAGAAGTTTGATAATTTACATTTATCCGTCCAAAAT
TCGTGCTTGCTTTGTCTTGTCTGCTGGTCTTTGTTTTGATTTCATTGCTTAGCTTTTTCAAATAATTCAAATATATATAG
GCGTGATAGAATAGCCTATTCTACACCATCCCTAATAACGCTATATACAATATCTAGTAAAACATTGTATGAAATATAGT
ACTTCAGAAGTAATTTTGTTCTACTATCCAAGTTATAATTTACTTTATTTTTACAAAAAATATTATATTTTATATAATGT
GTTATTATATTTTGTATATAGCATTATTAGGGGTGTAAAATAAGTTATTTTAAACTAGTTTAGCGGTTCCTGAGAATCAT
TCCTTCTTTTTTTTCTTTCTAATAACCAACAATATAGCATGGGGGTTTCAAGCAAAACCAATACAACTCAATGCATTTCA
CACGCCGGTGGATCAATTGTTATGTGATAGCTAGCGCGCTGCACGAGCGGCCGGCGGCAAGGACCCGAGCTTGAAGGAGT
CGAGCTCAAAGGAGGAGGAGGAGGAAGAGAACAAGGAGATGGATCCTGCGGAGGAGCTCGCGGCTGCCAGCTTTAAGGTC
ACCA
>chr4D_1033
AGCGTAC-------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
TGGAACAACTGACCAGTGACGACTGTCAGCAGGAGGATGAGCTCAACCTTGAGCTCACCCTCCGTACCACGGCCGCGGCG
GAGCCCGACGTCGGCTACTTCCTCTGCGTCTACTGCGAACGTAAGTTCCGCAGCTCTCAGGCCCTCGGCGGCCACCAGAA
CGCGCATAAGCACGAACGTAGCGTCGCCGAGCGTCAGCGGCTGATCCCTGCCACAACGCGCGCGCACGCCGTGCTCGTGG
GCGCGCCTGCTGCGGCGCAGGACGAGAGGCAGCCCGGGTACCACCGTGGGGGCGGCGGCGACTTCATGTCTGCGGCTGGG
AAAGCGAGGAAGACTGCTGCTGGAAAGACGCACAC---------------------------------------------
------------------------------------------------------GCACGGCAGGAGCTCGTCGGAGTACG
GCTACGGCGCCGACGATGTGGACTTGTCTCTCAGGCTATGATCGACCTGCTAGTTTGTTCCAGATCCCCACCCAGCTTAC
CTGGTTTGT---------------------------TATGCCGAGGTCTTCTTTGGTGATTACATGTGAAACTGCTGCTG
TGTTAGCTCGTTTCGAGCTCTGTGTGTGTTGGATTCTTATGTTCTTCTTCATGTGTTGAGTTTTTCCTCATGAAATTCCT
TGACCAGGAAGACAGTTTGTATCGCTCGTGGCAAAAATGCACAATATTTCAGACATGGATACGATCCTAAA---------
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--------GCTGTAACTTTGATGTTTCATTTTTTTTTTATATGACTGTGTTGAGAAATAAC-------------------
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-----------------------------------------------------CAAAAAGAATTATAAAACAGTTTTCTT
AGAGAAAACCAA----------------------------------------------------------TGATAACTAT
TCCTTTTTTCTTTTGTTTCTAATAACCAACAATCTGGCATGGGGGTTGCAAGCAC-ACCAATACAACTCAATGCATTTCA
CACGCGGGTGGGTCAACTGTTGTGTG------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------S-----S-----------------------S--------S----S-----------SS------------S--
-------S--------S------------S--------S-----------------S-----S-----------------
----------------------------S----S-S--S-------S-----S-S-------S-SSS--SSS--------
---------------------------------------------SS--------S-----S------------------
--S------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---------------
--S-S--------S--SS------------------------------S---------S--------S------------
SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------S
--SSS---S-----S----S--------------------------S---S-----------------------------
-------S----S------SSSSSS-SSSSSSSSS-S-SSSS-S-S-S-SSSSS-SS-S-SSSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---S-SS---SSS--S-SSSS---S----S--S-S-S--SS-S-SSSSS-S-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS------SSSS-SS-SSSS-
SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--SS--
-----S---S----S------------------S-S-----------S------SS------------------------
-----S-----S----S----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_670
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----------GGGCTGGACATGTGATGTGA--------------------------------------------------
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>reverse_2480
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-------------------------------------------------------------------------------T
CGAGCTCAAAGGAGGAGGA-------------------------------------------------------------
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