>input_sequence_76665
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--------------------ATGGCCGCGGTGGAGAGCAAGAGCCGGAGGTTCGCGCTGGCGTGCGGCGTCCTCAGCCAG
TACGTCAAGGCGGAGCAGAAGATGTCCTCCGCCGTCGCCGTCGCCCCGCGCGCGCCC------CCGGCCACCACGCTCAG
CCTCATGCCCGGCGCCGACGTCGACCAA---------GCCGCCGCGGCCGCTGATGAGGCGGGGCCTGCCACGGCCACGC
CCCTGACCATCTTCTACGGCGGCAGGGTGGTCGTCTTCGAGGACTTCCCCGCGGACAAGGCGGCCGAGGTCATGCGCATG
GCCGCCACCGCCGGCGTCGAGCGCGCGGCCGTCACCCCGGCCCCGGCCCAAG---------------CGGCGCTCGCGGA
CCTGCCCATCATGCGCAAGGCGTCGCTGCAGAGGTTCTTCGAGAAGCGCAAGGACCGCCTCGGCGCGCGCGCGCCCTACG
CCCGGCCCGCCGCGCCG---GCGGCCAACAAGGAGTCGGAGGACAAGTCGGCGTCGGCGTCGGCGTCGTCCTCCTCGTGG
CTCGGGCTGGCCAGCACCGATGGCGCCTTCGCCCTGTGA-----------------------------------------
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>chr4D_1_TraesCS4D01G296000
GATGTTCCTTGGAATTGCACGCACCGCTAGTCAGAACCACATGGCAGAGGATGGGAGTAGCTCGTAACTCATCGGGTTGG
CTCGATCTCAACAAAAAAACTCACGGCGACTCGTGAACTAAAAACTTGTGCCAGCCGAGAGATGCAGATGCATATGTATA
AGAAAAATTTACCGCCGATTCAAGGTATGGCGGCCGCCACGCTTTGCCCACTGGAGTCCTCCTCAGCCGATGACCGTTTC
ATTCAAAGTCATTCCATCGCCTCCTGTTGTTTGCGTGAGGAGTGGCACACCAACATGGCGGTCTCCGTATGACATATGGG
GTCCACCAGCCAGCAAAGTAAGCAAAGATAAAGAAAAACATGAGTATTCATGTTTGCACGGTTTCTTCAAACTTGGGTT-
GTTCGGTTCATGCAACTTGGTCACAAACGGAAAATGTTTTT-AAAAACGGGAGACAGAAGCAGTAGAGATGAAACTAGAA
AGCCCTGGACCCCCACCCC-CATGCGGCGGGCGCACATGAAGCGCGTGCGAGATGAAACAAGTGGCCGGAGACGAGGCAA
AGCCGCGGTCGACAAGAGACACGGAGACAGGGAGAGAGATAGAGAGGGGCAAAAGAAAGGAAAAGAAAAGCGGTGGCAAC
TCTCCCACCCAATACGCATCCGTCGCCATCATCCACCCGTACCCGCCTCCCCGGCCCTCAATCTTCACGTGTTCTTCGTG
CCCCGCACCACCTCC------ACCACGTCTCCTTCACTCGCCTAATCTATTCAA-AAAACAAAGCAAGC----GGCCAGC
CATGGAGGATGCGACTCTGCG----TGCTTCTCCCTCCCTTCCCTTCCGCTGAGACCGCCCACCCGCCCTATATAACCGC
CCTCCCCTCCCCAAGG----------------------------------------------------------------
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-------------------------TACCTCGCATCCCACCCCGCACAGCCATCCGTTCACAGACTCACCACAGCCACAC
CGCAACTTCATCTTCATCAACGAGA-----------------------AGCAGCAGCGCCCGGCGAAGAGACGAGACAAG
G----------AGTGTTGCCATGGCCGCGGTGGAGAGCAAGAGCCGGAGGTTCGCGCTGGCGTGCGGCGTCCTCAGCCAG
TACGTCAAGGCGGAGCAGAAGATGTCCTCCGCCGTCGCCGTCGCCCCGCGCGCGCCC------CCGGCCACCACGCTCAG
CCTCATGCCCGGCGCCGACGTCGACCAA---------GCCGCCGCGGCCGCTGATGAGGCGGGGCCTGCCACGGCCACGC
CCCTGACCATCTTCTACGGCGGCAGGGTGGTCGTCTTCGAGGACTTCCCCGCGGACAAGGCGGCCGAGGTCATGCGCATG
GCCGCCACCGCCGGCGTCGAGCGCGCGGCCGTCACCCCGGCCCCGGCCCAAG---------------CGGCGCTCGCGGA
CCTGCCCATCATGCGCAAGGCGTCGCTGCAGAGGTTCTTCGAGAAGCGCAAGGACCGCCTCGGCGCGCGCGCGCCCTACG
CCCGGCCCGCCGCGCCG---GCGGCCAACAAGGAGTCGGAGGACAAGTCGGCGTCGGCGTCGGCGTCGTCCTCCTCGTGG
CTCGGGCTGGCCAGCACCGATGGCGCCTTCGCCCTGTGATC----CGGACGGACGGACGGGGCAAGACGGCTTGCG----
CGCCTCAAGAGATCGTTTGTAGAGCACTTTAA-----AATGTATTCTTTGGATAAAAATTCGAATAGG--------GAAA
GAAAGAAACAAGATTGAGTTCATAGTATTAAGCCCTTTTTGTTTGCTTGT-----TTGTTTGACG-ATTCTTTTGATTTC
TGCGCGGATCATCAATCATGGTTCGCTCAGAAGGAGA-----TTCAGTTCATGAACCGAATAATAACTTGAAATAAAGAC
AAGTACGCACTACTAGCTTCAAACAACATTTCTTCCTTCTCCGGCGTCACCATTCGTACAGTTTGAGTAGTAC---A---
----------------------CCATGAACCGAAATGTAAAAAA---AAATAAAAATAAGAAACCAATCCCCAAATTGGC
GAGCAGCGGGTTCATGGC-----GGAGGGGAAGGGTGGGTGAGAAACGGTCAAAAAGGGAGTGGGGGAGCGCAACTTGTC
AAAACAAAAGGGGACGGGGGTTGTGGTGGGAGACTTGGACGTGCGTACGCGTCATTGCCTTTTTTTCTTCTTCTTCTTGG
AATAAC---GAAATGGAGCACGTTCATGGCGTTCCAGATAAACAACTGCCC----GTCCGTCCGTTGGCCCTTCGCTCTC
GGCTCACATGCGCGACGGC------------------------------GCGACGAGGAAGACGACGACCCTCGGAAGCC
CCGTGGCTCCCTCTCCCCCTCCAACGTGTT------GCCGCCACCTGTTGGCCGGTGGCTGGTCGCCGGCCTCGCGAAAC
CGCGTGGTAGC-GCATCGGAATAGTGTGGATGGGCGGCATCCATGGATGCTCGTCTCAACGTGCTCCTCTCCCGGGGCTG
GAGGA--------GAGGTGCTTTTCTCATGGGCGC-------------CCGCCCGATTCGGTCGGTGATGCGCGCTGTCT
GTCCCCCGGCCGCGGCCGCAACGTGCTCGGCACGGCGCATGGGATGGGAACGGGAAGGAAGGAACCGGTTGCTTGTAGTA
CTTGAATGAAAAGCTCCTTTTTTTCGCCTTTCCGGACGACGATTCCGCCACG
>chr4A_389
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--------------------------------------------------------------------AAACTTGGGTTC
GTTCGGTTCATGCAACTTGGTCAGAAATTTAAAACATTTTTCAAAAACGAGAGACAGAAGTAGTAGAGATGAAACTAGAA
AGCCCCCCGAGGCGAGGCGGCAGGCGGCAGGCGCACATGAAGCGCGTGCGAGATAAAACAAGTGGCGGGAGACGGGGCAA
AGCCGCGGCCGACAAGAGACACGGCGACAGGGAG-------------------AGAAAAGAAAAGAAAAGGTC--GCAAC
TCTCCCACCGAATACGCATCCGTCGCCATCACCCACCCATACCCCCCGG------CCTCAATCTTCACGTGTTCTTCGTG
CCCCGCACCACC---------ACCACGTCTCCTTCACTCGCCTAATCTATTCACGAAAACAAACCAAGC----G----GC
CATGGAGGATGCGACTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAGACTACCTCACATCCCGCCCCCCACAGCCATCCGTCCACAGAGTCACCACAGCCGCAC
CGCAGCTCCATCTTCACCACCG-TCATCGTCAACGAGAAGCAGCGGCGAGCAGCAGCGCCCGGCCAAGAGACGAGACGAG
ACGAGAGAACAAGTGTTGCCATGGCCGCGATGGAGAGCAAGAGCCGGAGGTTCGCGCTGGCGTGCGGCGTCCTCAGCCAG
TACGTCAAGGCGGAGCAGAAGATGTCCTCCTCCGCCGTCGTCGCCCCGCCCCCGCGCGCCCCGCCGGCCACCACGCTCAG
CCTCATGCCCGGCGCCGACGTCGGCCAGGACCAC---GCCGCGGCGGCCGCTGAGGAGGCGGGCC------CGGCCACGC
CGCTCACCATCTTCTACGGCGGCAGGGTAGTCGTCTTCGAGGACTTCCCCGCGGACAAGGCGGCCGAGGTCATGCGCATG
GCCACCACCGCCGGCGTCGAGCGCGCGGCCGCCACGCCCGCCCCGGCCC------------------CGGCGCTCGCGGA
CCTGCCCATCATGCGCAAGGCCTCCCTGCAGAGGTTCTTCGAGAAGCGCAAGGACCGCCTCGGCGCGCGCGCGCCCTACG
CCCGCCCCGCCGCGCCG---GCAGCCAACAAGGGCTCGGAGGACAA------------GTCGGCGTCGTCCTCCTCGTGG
CTCGGGCTGGCCAGCGCCGACGGCGCCTTCGCGCTCTGATCCGGACGGACGGACGGACGGGGCAAGACGGCTTGCTCGCT
CGCCTCAAGACATCGTTTGTAGAGCACTTTCAATTTTAATGTATTCTTTGGGTAAAAATTCGAATAGCGAAAGAAAGAAA
GAAAGAAACAAGATTGAGTTCATAG---CAAGCCCTCTTTGTTCGTTCGTTTGATTTGATCGACAAATTCTTTTGATTTC
TGCGCGGATCATCAGCCATGGTTCGCACA----GAAACCCAGTTCAGTTCATGAACCGAACAATAACTTGAAATAAAGAC
GAGTG----CTACCAGCTTCAAACAACGCTTCCTCCATGTCTGGCATCACGACCACGACTAGCACAGCTACGATTACCAT
CTTGAGTACGTATGCCATGATCCCATGAACCGAAATGTCAAGGG-------------AAGAAACCCATCTCCAGTTCGGC
AAGCACGA-GTTCATGGCGGAGGGGAGGGGAAGGGTGGGTGAGAAACGGTCAGAAAG-----GGGGGAGCGCAACTTGTC
AAAA----GGGGGACGGGGGTTGCGGTGGGAGACTTGGACGTGCGTACGCGTCATTGCCCTTTGTTTTTCTC----TTAG
AATAACGAAGAAATGGCGCACGTTCATGGCGTTCCGGGGGAACAACCATTGCTC------------GGCCCTTCGCTCTC
GGCCCTCGCGCGCCCGGACCACGCG----CACACGCGGCGACGGCGACGGCGGCGAAGACGACGACGACCCTCGGAAGCC
CCGTGGCTCCCTCTCCTCCTCCAACGTGGACGTGTCGGCGCCACCTGTTGGCCG--------------------------
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>chr4B_694
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--------------------------------------------------------CTCAATCTTCACGTGTTCTTCGTG
CCCCGCACCACCTCCACCACCACCACGTCTCCTTCACTCGCCTAATTTATTCAA-AAAACAAACCAAGAGGGAGGCCAGC
CATGGAGGATGCGACTCTGCGTGCGTGCTTCTCCCTCCCTTCCCTTCCGCTGAGACCGCCCACCC-CCCTATATAACCGC
CCTCCCCTCCCCAAGG----------------------------------------------------------------
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-------------------------TACCTCACATCCCACCCCCCACAGCCATCCGTTCACAGAGTAACCACAGCCACAC
CGCAACTTCACCTTCACCATCCATCATCGTCAACGAGAAGCAGC----------AGCACCCGGCCAAGAGACGAGAC---
-------AACAAGTGTTGCCATGGCAGCGGTGGAGAGCAAGAGCAGGAGGTTCGCGCTGGCGTGCGGCGTCCTCAGCCAG
TACGTCAAGGCGGAGCAGAAGATGTCCTCCG---TCGCCGTCGCCCCGCGCGCGCCC------CCGGCCACCACGCTCAG
CCTCATGCCCGGCGCCGACGTCGGCCAGGAGCACGCGGCCGCGGCGGCCGCTGAGGAGGCGGGTCCCGCCACGGCCACGC
CGCTCACCATCTTCTACGGCGGCAGGGTGGTCGTCTTCGAGGACTTCCCCGCGGACAAGGCGGCCGAGGTGATGCGCATG
GCCGCCGCCGCCGGCGTCGAGCGCGCGGCTGTCGTGCCCGCCCCCGCCCTCCTCCCGGCGGACAAGACGGCGCTCGCGGA
CCTGCCCATCATGCGCAAGGCGTCGCTGCAGAGGTTCTTCGAGAAGCGCAAGGACCGCCTCGGCGCGCGCGCGCCCTACG
CCCGCCCGGCGCCGGCCGCCGCGGCCATCAAGGACTCGGAGGAGAAGTCGGCGTCGGCGTCGGCGTCGTCCTCCTCGTGG
CTCGGGCTGGCCAGCACCGACGGCGCCTTCGCCCTCTGATC----TGCACGGACGGACGGAGCAAGACGGCTTGCCCGCT
----TCAAGAGATCGTTTGTAGAGCACTTTTA-----AATGTATTCTTTGCGTAAAAATTCGAGTAGGGAAAGAAAG---
-AAGGAAGGAAGATTGAGATCATAG---TAAGCCCTTTTTGTTTGATTGA-----TTGGTTGACAAATTCTTTTGATCTC
TGCGCGGCTCATCA-TCATGGGTCGCCCA----GAGA-----TTGAGTTCATGAACCGAATAATAACTTGAAATAAAGAC
AAGTACGTAGTACTAGCTTGAAACAACAATTCTTCTTTCTCCGGCGTCACCACTGATACAGTTTCAGTAGTATACTA---
----------------------CCATGAACCGAAATGTAAAAAATAAAAAAAAAATTAAGAAACCAATCCCCGAATTGGC
AAGCAGCA-GTTCATGGC-----GGAGGGGAAGGGTGGGTGAGAAACGGTCAAAAGGGTT-----GGAGCCCAACTTGTC
AAAA----AGGGGATGGGGGTTGTGGTGGGAGACTTGGACGTGCGTACGCGTCATTGCCTTTTTTTT---------TTAG
AATAAC---GAAATGGAGCACGTTCATGGCGTTCCAGATAAACAACTGCCCGGTTGTCCGTCCGTTGGCCCTTCGCTCTC
GGCTCTGGCGCACCCGGACCACCCACACACACACGCGGCGACGGCGACGGCGGCGAAGACGACGACGACCCTCGGAAGCC
CCGTGGCTTCCTCCCCTCCTCCAACGTGGT------GGCGCCACCTGTTGGCCTGTGGTTGGTCGCCGGCCTCGTGAAAC
CGCGTGACATGGGCAACGGAAGAGTGTGGATGGGCGGCATCCATGGATGCTCGTCTCAACGTGCTCCTCTCCCGTGGCTT
GCATCTGGGGCTGGAGGTGCTTTTCTCATCGGCGCAGGGCGTGCGTGCCCGGCCGATTCGGT----------------CT
GTCCCCCGGGCGTCGCCGCAACGTGCTTGGCACGGCGCGTGGGATGGGAACGGGGAGGAAGGAACCGGTTGCTTGTA---
CTTGAATGAAAAGCTCCTTTTTTTCGCCTTTCCGGACGACGATTCCGCCACG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----------------------S---SSS----SS-------------S----------S-------------------
-----SSSSSSS-S-SS-S---S-----S-------------------------S-----------S-------S-----
--------S---------------S---------SSSSSSSSSSSSSSSSSSS-----S-----------SSSSS-----
---------S---------------------S------S-----S--SSSSSSSS-------------------------
---------------------------------------------------------------S----------------
-----------------------------------------------------------------S--------------
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-------------------------------S-----------S--------------------S---------------
----------------S--S---SS---------------------------------------S------------S--
S-------------------------------------------------------------------------------
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-----------------------S---S--------------S-----------S--------S--S-------------
-S--S---------------------------------------------------------------------------
-----------------------------------S--S----------SSS----------------------------
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----S-----------------------------S---------------------------------------------
--------------------S--------------S---------------------------------------S----
------------------------------S--------------------S----------------------------
-------------------------SSS-----------------S------------S-----S---------------
--------------S-----------S--SSSS-----------------------------------------------
-------S--------------------S-----------------------S-SS--------S-------S-------
--------------------------------------------------S----S------------------------
S------SS-------------------------------------------------SSSS------------------
----SSSS----------------------------------------------------------S----SSSSS--S-
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-----S-SS----SSS-S----------------------------------S---S--S--------------------
----------------S-----------S--------S--------------------S---------------S-----
------SS-SS----S-----S----------------------------------------------------S----S
-SSSS------------------------S---------------------S----------SSSSSSSSSSSSSSSS--
---------S--SS-------------S----------S---------------S----------------------SSS
----------------------------------------------------
>forward_54
----------------------------------AACCACATGGCAGAGGATGG--------------------------
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>reverse_2189
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----------------------------TTTCTTCCTTCTCCGGCGTC--------------------------------
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