>input_sequence_76664
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-----------------------------------ATGGGAGGACCTCCCGCGGCGCCGCGGCAGGAGGAGGA---CGCT
GTGGTGGTGACGGAGCTGGAGGTGCGCGTGCAGCTGCTGGCCTCCGGCGGCGGCG---------CGTACAACATCAACGA
CAACGCCGACATCCTCTCGGAGATCCTGGCGCGCCTCGACGGCCGCTCGCTCGCCTCCGCGGCCAGCGTCTGCCGCCTCT
GGGCCGCCGTGTCGCGCCGGGACGCCGTCTGGGAGGCGCTCTGCCTCCGCCACGTGGGCCCGGCGTCCGGCCCCGCGGCG
GGCCACGCCACCCGCACCGTCGTGGCCGCGCTCGGCGGGTACCGCCGGCTCTACCGCCTCTGCCTCGGCCCGGCGCTGGA
CCGGCTGGGACGCGCGGGAGCCCTTGCACACGCGCAGGCCCGGGCGCGACTGTCGCTCTCCCTCTCGCTGTCGCTCTTCT
CCATCGACTGCTACGAGCGGCTAGGAGGCGGGGGAGGGGGCTCTGCCGGCGCCGGCAGGCAGCAGCCGCCGTCGTCGCTG
CTCTTCCTCTGCAAGCCGGTGGACGTGTCCTGA-----------------------------------------------
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>chr4D_1_TraesCS4D01G263600
GCCAATGGTCGAAGCTAGCCGTTGCGTCGTCGCTCCACTTTTCTCGGC--GGAACGGGACCCGAAATCCACACGAGCTGG
CTATAGCTGCTGCCGGTTACGAAATGTGTTTGTCGTGAGCACGGGC---GTCGTCCTCCTGACGGCGCCCCCATATTTTT
CTTGAGAAAG-TGACGGCCCTTCTATATTTAAACAGTGTGCCTACCTCGCCAGTGCCCAGCTACGC---GTACGTACTTG
CGTCGAACT-TTTTGTGGAGTGGTCGTCTACTCATATCCACTGTACGCCGACGCTGATGGACGTATACCGGCACCAAAAA
GAAACGCACGTACCAACCATAACTGCACACGATC---GTATCGCCGCTGTACAGTGCGCGC-------------------
------------GGCGAAGTGGCAGCAGCA---TCGCCGCGGCCGCTTGACCGAGCTACAGTGGCGCGCAACCACCGGCC
ATGGTGGTTGCAACGAGCGTCGTGCGCGGCTGTCCGAGCGTCTCCCCGAG-----------------GAGGAGGACGAGG
GAAAACACGTACGTACGCGTGGCGTCAAAACGGAGGCGAATAGTTTAAGGCCGGGCTCCGGAGGAGTCGCTGCGGCGACG
TACCCTTGCTCGACGTCGCGCGCATCTCCACGCCGGCCCCTTTGGCCCGTCCCGCTTGGCCACATCTCCCCCTTGGCTCG
CCGCGCCAGATGCCCTAGCTTCTCGGCTCGCGGCAGGGC----CGCCACCTCGGCCCTTGCCGGAGCCCGGAGACTGCAC
CTTCGGATGGATTCCTTTGCTTTACGGTGACCGGCCGATCGATTTAGGGCTCGCTCGCTCCCTGCTTCCGCCACGGCCAC
TGCCATTATTGGTTCCTGGAAGGCTTTAATCGCCTTTTTATGTTGCGCCCCCACAGACACGAGCGGGAGCAGAGTCAAAA
CCCCGCCCGCGCGC--CCCCCTATATATACGCCCC--TCCGCCCTCTCACCTCTCACCTCTCGCCACCTCC-CTTCCCTC
TACCCCTTGAACCAGCACC--GCCGGCCCGTGTGTATGGGAGGACCTCCCGCGGCGCCGCGGCAGGAGGAGGA---CGCT
GTGGTGGTGACGGAGCTGGAGGTGCGCGTGCAGCTGCTGGCCTCCGGCGGCGGCG---------CGTACAACATCAACGA
CAACGCCGACATCCTCTCGGAGATCCTGGCGCGCCTCGACGGCCGCTCGCTCGCCTCCGCGGCCAGCGTCTGCCGCCTCT
GGGCCGCCGTGTCGCGCCGGGACGCCGTCTGGGAGGCGCTCTGCCTCCGCCACGTGGGCCCGGCGTCCGGCCCCGCGGCG
GGCCACGCCACCCGCACCGTCGTGGCCGCGCTCGGCGGGTACCGCCGGCTCTACCGCCTCTGCCTCGGCCCGGCGCTGGA
CCGGCTGGGACGCGCGGGAGCCCTTGCACACGCGCAGGCCCGGGCGCGACTGTCGCTCTCCCTCTCGCTGTCGCTCTTCT
CCATCGACTGCTACGAGCGGCTAGGAGGCGGGGGAGGGGGCTCTGCCGGCGCCGGCAGGCAGCAGCCGCCGTCGTCGCTG
CTCTTCCTCTGCAAGCCGGTGGACGTGTCCTGATCAATGAGCGCGCCGACGCACGCCGGCC-------------------
---------GTATGATCCGTCCTCAATGCCGTCGCGCTCTGGG------------------------CCGACGCGCGCCG
CGGTTGACAATGACATAGTGGTCGTTGTCCAATTTGCTCATTTTTATTTATTACCTATATTAGCACGGACCAATAAGGGT
TAATTAAT---TGATTACGCATTTGTAGCTGTACCGCAGGGGCATTGAATATGGAAATAAACGAATGATTCATTCTTTCT
TTCTTTCTCAGAGAG-CGAGAGT--GAGTGAGGGACCTTTCTCCGGTTTCCGATGGTTCCTCGGTGTACGCTTGGGCCTT
GTTTGCGTCCGCTTGGCGACTTGCTGTTTCTCACCACTCGCCTTGTACCGCTCCCCGTGTTGTTGCTTCGTCTGGATGCT
TGCGTGCAGCTCGCGCATGTGACCCCT-CCATCCATCTACTCCTAGTACTTAAGCTTAACTTACGTGGTAATCACCTCAC
CTCACCTCTCGCGACCGGGTGATGGATGGATGAGTGACCCGTGAATGAGTGGGCA-------------------------
-------AGTGCTAATCACCTTTTGGTTTGCACGCAAGGGGCAAGTTGTTTGCCTCTACTCTACCGGATACGGGCATACG
GCTAGCCCCAAAGCGG--------TCTTGCTACTACTCCGGGGACCGCCGGTAATGGACCACTGGCTGCTTTGATTGCTC
GATGTTTCTTTGGATAGCTCCGA---CTGGATCTTACGCCGAAAGAAACAACGGCAAAGCATAAAACACACACGGCTGCG
AGATCCTTTCTACTATGACTACTTCGAATGCTAGGGCCTCCTTTAGTTCACATGATTATAAAAAAAAGCAGGAAATGAAT
AGGGCTTGTCACGGTGAAAGTATCATGCATGTCAACTAAGCAGTTTAGATGAGGCGGCATACAATTAAATGAAGAAAAAG
AGGATTGAGTATCATCATATGATACCATGGCTCTGCGATCTTCTACTGCCTCTACGTTTCCCCCCGACTTTCCCGGAGCC
TATGTGCGAGGCGAT
>chr4A_1
GCCAATGGTCGAAGCTAGCCGTTGCGTCGTCGCTCCACTTTTCTCGGCGTGGAACGGGACCCGAAATCCACACGAGCTGG
CTATAGCTGCTACCGGTTACGAAATGTGCTTGTCGTGAGCACGGGCACCGTCGTCCTCCGGACGGCGCCCCCATATTTTT
CTTGAGAAAG-TGACGGCCCCTCTATATCTAAACAGTGTGCCTACCTCGCCGGTGCCAGGCTACAGGTAGTACGTACTTG
CGTCGAATT-CTTTGTGGAGTGGTCATC--------TCCACTGTGCACCGACGCTGATGGACGTATACCGGCACAAAAAA
GAAACGCACGTACCGACCATAACTACACACGATC---GTATGACCACCGTACAGTGCGCATGC-----------------
----------------------------CACCGTCGCCGCGGCCGCTTGACCGAGCTACAGTG-CGCGCAACCACCGGCC
ATGGTGGTTGCAACGAGCGTCGTGCGCGGCGGTGCGAGCGTCTCCCCGAG-----------------GAGGAGGAGGAGG
GAAAACACGTACGTACGCGTGGCGTCAAAACGGAGGCGAATAGTTTAAGGCCGGGCTCCGGAGGAGTCGCTGCGGCGAGG
TACGGTTGCTCGACGTCGCGCGCATCTCCACGCCGGCCCCTT-GGCCCGTCCCGCTTGGCCACATCCCCCCCTTGGCTCG
CCGCGCCAGATGCCCTAGCTTCTCGGCTCGCGGCAGGGTCGGTCGCCACCTCGGCCCTTGCCGGAGCCCGGAGACCGCAC
CTTCGGATGGATTCCTTTGCTTTACGGTGACCGGCCGATCGATCTAGGGCA--------CCCGGCATCCACCATGGCCAC
TGCCATTATTGGTTCCTAGAAGGCTTTAATCGCCTTTTTATGTTGCGCCCCCACAGACACGAGCGGGAGCAGAGTCAAAA
CCCCGCCCCGCGCGCACCCCCTATATATACGCCCC--TCCGCCCTCTCACCTCTC-------GCCACCTCC-CTTCCCTC
TACCCCTTGAACCAGCACC--GCCGGCCCGTGCGTATGGGAGGACCTCCCGCGGCGCCGCGGCAGGAGGAGGAGGGCGCT
GTGGTGGTGACGGAGCTGGAGGTGCGCGTGCAGCTGCTGGCCTCCGGCGGCGGCGGCGGCGGCGCGTACAACATCAACGA
CAACGCCGACATCCTGTCCGAGATCCTGGCGCGCCTCGACGGCCGCTCGCTCGCGTCCGCGGCCTCCGTCTGCCGCCTCT
GGGCCGCCGTGTCGCGCCGGGACGCCGTCTGGGAGGCGCTCTGCCTCCGCCACGTGGGCCCGGCGTCCGGCCCCACCGCG
GGCCACGCCACCCGCACCGTCGTGGCCGCGCTCGGCGGGTACCGCCGGCTCTACCGCCTCTGCCTTGGCCCGGCGCTCGA
CAGGCTCGGCCGCGCGGGCGCCCTCGCCCACGCGCAGGCCCGGGCGCGCCTGTCGCTCTCCCTCTCGCTGTCGCTCTTCT
CCATCGACTGCTACGAGCGGCTAGGAGGCGGGAGCGGCGCCACTGCCGGCGCCGGCAGGCAGCAGCCTCCCTCGTCGCTG
CTCTTCCTGTGCAAGCCCGTGGACGTGTCCTGATCAATG-------------------GCC-------------------
---------GTATGATCCATCCTCAATGGCGTCGCGCTCCGGGCCGACGCACGCCGGCCGTACCCTCCCGACGCGCGGCG
CGGTTGACAATGACATAGTGGTCTTTGTCCAATTTGCTCATTTTCATTTATTACTTATATTAGCACGGACCAATAAGGGT
TAATTAAT---TGATTACGCATTTGTAGCTGTACCGCAGGGCCATTGAATATGGAAATAAACGAATG----ATTCTTTCT
TTCTTTCTCAATGGATTGAGAGTGAGAGTGAGGGACCTTTCTCCGGTTTCCGATGGTTCCTCGGTGTACGCTTGGGCCTT
GTTTGCGTCCGCTTGGCGACTTGCTGTTTCTCACCACTCGCCTTGTACCGCTCCCCGTGTTGTTGCTTCGTCTGGATGCT
TGCGTGCAGCTCGCGCATGTGACCCAACCCATCCATCTGCTCCTCCTACTTAAGCTTAACTTACGTGGTAATCACCTCAC
CTCACCTCTCGCGACCGGGTGACGAACGGA-----------TGAATGAATCGGCG-------------------------
-------AGTGCTAATCACCTTTTGGTTTGTTCGC------------------TTCTACTCTACCGGATACGGGCATACG
GCTAGCCCCAAAGCAG--------TCTTGCTGCTACTCCGGGGACCGCCGGTAATGGACCACTGGCTGCTTTGATTGCTG
GATGTTTCTTTGGATAGCTCCTACTGCTGGATATTAGGCCGAATGAAACAACGGCAAAGTATAAGACACACACGGATGCG
AGATCCTTTCTACTATGACTACCTCGAATGCTAGGGCCTCCTTTAGTTCACGTGATTCTTAAAAAAAGCATGAAATGGAT
AGGACTTGTCGCACGAAAGT-ATCGTACATGCCAACTATGCAGTTTAGATGAGGCGGCATACAATTAAATGAAGAAAAAG
AGGATTGAGTATCATCATATGATACTAGGGCTCTGCAATCTTCTGCTGCCTCGACGTTTCCCCAGAC--TTTCCCGAGCC
AATGTGTCGGGCGAT
>chr4B_1
GCCAATGGTCGAAGCTAGCCGTTGCGTCGTCGTTCCACTTTTCTCGGC--GGAACGGGACCCGAAATCCACACGAGCT--
--ATAGCTGCTGCCGGTTACGAAATGTGTTTGTCGTGAGCATGGGC---ATCGTCCTCCGGACGGCGCCCC-ATATTTTT
CTTGAGAAAAATGACGGCCCGTCTATATTTAAACAGTGTGCCTACCTCGCCAGTGCCCAGCTACAC---GTACGTACTTG
CGTCGAATTTTTTTGTGGAGTGGTCATC--------TCCACTGTACGCCGATGCTGATGGACGCATACCGGCACCAAATG
G-AACGCACGTACAAACCATAACTGCACACGATTTGTGTATCACCACTGTACAGTGGACATCACACGCAACGTGACGTGC
GTACGTACGCATGGCGAAGTGGCAGCATCACCGGCGCCGCGGCCGCTTGACCGAGCTACAGTGGCTCGCAACCACCGGCC
ATGGTCGTTGCAACGAGCGTCGTGCGCGGCCGTGCGAGCGTCTCCTTGGCGGTGTCCATCGCTCCCCGAGGAGGACGAGG
GAAAACACGTACG----CGTGGTGTCAAAACGGAGGCGAATAGTTTAAGGCCGGGCTCCGGAGGAGTCGCTGCGGCGACG
TACCCTTGCTCGACGTCGCGCGCATCTCCACGCCGGCCCCTT-GGCCCGTCCCGCTTGGCCACATCTCCTCCTTGGCTCG
CCGCGCCAGATGCCCTAGCTTCTCGGCTCGCAGCAGGGC----CGCCACCTCGACCCTTGCCGGAGCCCGGAGACTGCAC
CTTCGGATGGATTCCTTTGCTTTACGGTGACCGGCCGATCGATTTAGGGCTCGCTCACTCTCTGCTTCCGCCACGGACAC
TGCCATTATTGGCTCCTAGAAGGCTTTAATTGCCTTTTTATGTTGCGCCCCCACAGACACGAGCGGGAGCAGAGTCAAAA
CCCCGCCCCGCGCGCACCCCCTATATATACGCCCTTATCCGCCCTCTCACCTCTC-------GCTACCACCTCTTCCCTC
TCCTACACGAAGCCAGCACCTGCCGGCCCATGTGCATGGGAGGACCTCCCGCGGTGCCGCGGCAGGAGGTGG---GCGCT
GTGGTGGTGACGGAGCTGGAGGTGCGCGTGCAGCTGCTGGCCGGA---------GGCGGCGGCGCGTACAACATCAACGA
CAACGCCGACATCCTCTCGGAGATCCTGGCGCGCCTCGACGGCCGCTCGCTCGCGTCCGCCGCCAGCGTCTGCCGCCTCT
GGGCCGCCGTGTCGCGCCGGGACGCCGTCTGGGAGGCGCTCTGCCTCCGCCACGTGGGCCCGGCGTCCGGCCCCGCGGCG
GGCCACGCCACCCGCGCCGTCGTGGCCGCGCTCGGCGGGTACCGCCGGCTCTACCGCCTCTGCCTCGGCCCGGCACTGGA
CCGGCTGGGGCGCGCGGGAGCCCTCGCCCACGCGCAGGCCCGGGCGCGCCTGTCGCTCTCCCTCTCGCTGTCGCTCTTCT
CCATCGACTGCTACGAGCGGCTAGGAGGCGGGGGCGCCGGC---GCCGGCGCCTCCAGGCAGCAGCCGCCGTCGTCGCTG
CTCTTCCTGTGCAAGCCCGTGGACGTGTCCTGATCAATG-------------------GGCGTGCGCACGGCACGATCCC
ACCCCGGCAGTACGATCCATCCTCAATGCCGTCGCGCTCTGGG------------------------CCGACGCGCGACG
CGGTTGACATAG---TAGTGGTCTTTGTCCAATTTGCTCATTTTTATTTA----CTATATTAGCGCGAACCAATAAGGGT
TAATTAATAATTGATTAAGCATTTGTAGCTGTACCGCAGGGGCATTGAATATGGAAATAAATGAATC----ATTCTTTCT
TCCTTTCTCAGAGAG-TGAGAGTGAGAGTGAGGGACCTTTCTCCGGTTTCCGATGGTTCCTCGGTGTACGCTTGGGCCTT
GTTTGCGTCCGCTTGGCGACTTGCTGTTTCTCACCACTCGCTTTGTACCGCTCCCCGTGTTGTTGCTTCGTCTGGATGCT
TGCGTGCAACTCGCGCATGTGACCCATTCATCCGTCTCTCCTA-----------CTTAACTTACGTGCTAATCACCTCAC
CTTTGGCCACCGGGT---------GATGAATGAGTGGCCGGTGAATGAATCGGCGATGATGCGCAGCTGATTAGAAGATC
CCCTTGCAGTGCTAATCACCTTTTGGTTTGCTCGCAAGGGGCAAGTTGTTTGCTTCTACTCTACCAGATACGGGCATACG
GCTAGCCCCAAAGCAGTCTTGCACTCTTGCTACTACTCCGGGGACCGCCGGTTATGGACCACTGGCTGCTTTGATTGCTG
GATGTTTCTTTGGATAGCTCCTAC---TGGATATTACGCCGAAAGAAACAACGGCAAAGCATAAAACACACACGGCTGCG
AGATCCTTTCTACTATGACTACTTCGAATGCTAGGGCCTCCTCTAGTTCACACGATTCT--AAAAAAACAGGAAATGGAT
AGGACTTGTCAAAGTGAAAGGATCATACATGCCAACTATGCAGTTTAGATGAGGCGGCATATAATTAAATGAAGAAAAAG
AGGATTGAGTATCATCATATGATACCACGGCTCTACGATCTTCTACT---------------------------------
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>SNPs
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-----------------------------------------------------------S--------------------
--------------------S-------------------------------------------S---------------
-------S-----------------S--SSSSSSSS--------------------------------------------
------------------------------------------S--S-------------SS-------------------
---------------------------S----------------------------------------------------
------------------------------S--S----------------------------------------------
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------------------------------------------S-------------------------------------
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--------------------------------------------------------S-----------------------
-----------------S--------------------------------------------------------------
--------SSSSSS-----------------------------------------SSSSSSS------------------
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---------S--------------S--S--------------------S-------------------------------
----------------------------------S--S---S--------------------------------------
--------S--------S---------------------SSSSSSSSSSSSSSSSSSS----------------------
------------------S----------------------------------------------------------S--
-----------------------S--------------------------------------------------------
-------------------------------------------------------------------SSSS---------
----------------S---------------------------------------------------------------
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-------------------------S------------S-----SS----------------------------------
----------------------S-------------S--S--------S-S---S-------------------------
-------------------------------S---------------------S--------------------------
--------------S----------------------------------------------------------------S
---------------------S----------S-----------------------------------------------
---------------------------------------------------------S-S-----------------S--
---S--------S-------S-----S----S------S-----------------------------------------
---------------------------S------------------------S----------SSSSSS--S--S-----
S-----SSS------
>forward_181
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-CTTGAGAAAGTGACGGCCCT-----------------------------------------------------------
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>reverse_1937
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----------------CGAGAGTGAGTGAGGGACCT--------------------------------------------
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