>input_sequence_76656
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------ATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCGAAAAATTGCATAAGGATAGCACG
GGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGACAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATTG
AGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTCTCGACCTGTTTGCTAGGAATGTCTAATAACCATAGTA-TTT
TTATTTATTTATGAATAA--AGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGGCAGGTCGATAGAAGACCAG
CAGCCTTGCATTCTGTGGTTTAAGTAACTCTTTTCTTGCATCTGACTGCCAGGTGAATTATGGCAACTTCATGCATGGAT
TGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCATACAGCTTCAAGGCACTT
GTTGATGTATCTCGCACTGCATTTCCGGGGAACAGGCCACCTGCCCAAAAGGAAGGTCTAGCAGCTATTCTGTGA-----
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--
>chr3D_1_TraesCS3D01G280000
TTTTCATTATAAAGGGAGAAAAATTGTCCAGCTGCAGTTGATGTTAATCCACATCTGACGAGATT-AGGTCGCAAGGCCG
TTGCG---------------------------------------------------------------------------
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-------------------------------TCGGCCATCCCGCCGCTGGTAGAACCCATCCCGTAACCGAGCGAAACTA
CCCCCTT-------------------CGCTTGTAGCCATCCATGTATGTTGATATGTCCTGCTACAGGGCGGTAGCTATG
CGTACCACACGATTTCAGATTTTTAGGATATTTTCGGGAACTGTGTGAATTATTGAATTTTCCTGAGACATTTT-CCAGT
TTCTTGAGTTGTTTTATATTCCCTCCGTTTCTAAATATAAGTCTTTTTAGATATTCCAATACGGAACACATATAGGGCGG
AGCAAAGTGAGTGAATCTACACTCTAAAGTATGTCTATATATATCCGTATGTAGTTCATATTGAAATCTTTAAAAGGTCT
TATATTTAGAAACGGAGGTAGTATATGAAAATCCACGTCAGTCCAAACGAATTCTCATGGTGGAGGGGATCGAATAGAGC
GACATTCAGTCCATGTGGGGATTGTGTGGAAGGATGGTT-----------------------------------------
------CCCATTCCCTTGACAGTGGTGGATAATGGAGCAGGGCGAGAGCATTCCG---------------TCAACTCATC
ACCGGGATGTTCATGTTGAATAAAAGTTCAGGGCCATATGTTCTATGAATAGCCTGCTGTTTATTAATA-----GGAGCA
TCATATGACAGCATATGTTACTATTTGCAGAGCAAACAAAGAG-AAATGTTCTGAATTTTCGGTGGCTACACAGTATTTC
TGTGTGGAGCTAACAGTGCGCATGAATTTGAGCTATCATATGTTTCGTCGAAGACTTTTTAGTGTAGTGCAGGGAGCTTA
AGCTGTTAGACCTTTTCTTGATTTTTGTAGTGAAAATCAATACAAAAAACCTTGCTTCTAGTTAAGTACTACATATTAGC
-----------TAAAAGTTTTTTAAAATCTTTTGTTTCAGATTGTAGGACAGGAGTCCAAGCATCTAGCAGCTTGTTAGC
TACAAAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCGAAAAATTGCATAAGGATAGCACG
GGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGACAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATTG
AGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTCTCGACCTGTTTGCTAGGAATGTCTAATAACCATAGTA-TTT
TTATTTATTTATGAATAA--AGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGGCAGGTCGATAGAAGACCAG
CAGCCTTGCATTCTGTGGTTTAAGTAACTCTTTTCTTGCATCTGACTGCCAGGTGAATTATGGCAACTTCATGCATGGAT
TGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCATACAGCTTCAAGGCACTT
GTTGATGTATCTCGCACTGCATTTCCGGGGAACAGGCCACCTGCCCAAAAGGAAGGTCTAGCAGCTATTCTGTGAAACAG
CTTGTCCAATAAATCACACTGCTGCCATGACGGTCTTCCGTTTTCCCTTCGTTGCAACTGAAAGTTATTACCAGTCCACC
AATATCTTGTATTCGGGAGGTGACTCATGTAATCTCTTTTTGCCATTCCCTGTGGTATTCTCTTTAGCAGGAACACCTTT
TCATTGAATTATTGCTCATTTGGCCCCTTTCTGTTGGTCTTATAGAGAGAGG----------------------------
-TCTCTGTGTTACAAGTTACCAATGTTGATTGTTAATTCTGTAGCAATATGATAGAGATCGGTGACCCTTGTGTTGTGCT
CATCTATAATTGTGACCAGTAAACACCCCT-CTTCTAAATGCATACTTGTAAAGTGATTGTGTCTAGAGAGCGAAACAAA
GGGAGTGTTGCACGTCTCTTCA-TTTTCATCGCAAGAGTTAAGAGTGCATGATGTTCAGAATTCTTTTGAAGTTATGGAA
TCTTCTGGCTCGATCCCAGTAAGGCCTTGCTTGTTTCAGCTTCAACTTCTGTCAAATCAGCTGTGGATTCGCTTCACTCA
GAATCAGCTTTGCCACTCAAGGACACCGGGACGTGCTTCAAGAAAATAGCCGTTTGTTTC--AGATTACGCTTTGCCCTG
AAGCTGAAACAAACAAGGCCTAAGTCCAATGTCCTTGTTACTCTTGGTCAGTAACAGACCTCTTCTGATTATTTACACTA
AAAAGGATATCCTCTGATTACACTTCCCATACCAGCCATTCATTGGTGTATAGAAGAGAACTAGCAGTACATGTTTT---
---TGATCAGATGGGGTGCTCAGAATCTCAGCTCACTTGGCATGGAGTAGTGCATATGCTAAAACAGACATTCTTCTCCT
GAAAATG----AACAAATTTCGTGCATTCCTTTGTCCCTTTCTTTACTTTGCTAATGTTCCCAAGACCCATCTGACAATG
GTCA--TACATGCACATGTGATGTGAGATACATATATTG--TCTATAACTTCAAATTCTGCTAAAACAGAATACTAATAC
TC
>chr3B_1
TTTTTATCATAAAGGGAGAAAATTTGTCCAGCTGCAGTTGATGTTAATCCACATCTGACGAGGTT-AGGTCGCAAGGCCG
TTGCGGCATGGCGGCGGGAGAGAGGCGATGAGCGGCAGGGTGCTAGCGGTGCCATCGCCGGCTTGCTGCAGCATGGCGGC
GGGGCTTAGCAGGCCCGTTTCGGGCCTGGCCGGGCCAGGGGTGGCCTGGCATGCCCTGCTGTCGCGTCCGGACGGCTACC
GCGATGGTGTCGGAGGTTATGGCCTCTCGCACGACGACAGTGGAGGTGGTTCCCTCCCGTTCGGCTTCGGCGCTGCTTCT
TCCTCCGTGGGGCGCTTCTCTCCGGTCCTCTTGGCCTCGTGTTGGTGTTCGCAGTGAGGCGGAGTGGGTGGCAGCACAAC
CGCGTTGGCGCATGGTGGTGGGCAGTGGTCTGGCTGGTCGGCTCCGGTCCGTTGACGGTGGGGTTGGAGTGTGGGAGAAA
TCCTTGCCGGTTCTTCGGCTTCGATGCGGTGACACCTGCAGGTGCCACCATCCCTTCCTGAAGGGTGTCGGTGATATCCA
TCCCCCACCTCCCTCCGCGTGCCGGGGTAAACCCTAGGACAAGTCCGGGCAACAGCGTCGTCGGCGTCGCATTCCTTCTT
GGAGGTGCTGCTTGGTGCGCGGCGGTTCGGAGCCTCAGTTTGTGGTGGTTTGTTTCTGAAGGGCGTAGCGGTGGCGGGTC
ATCCGCGCTTTGTTAAGCTGCCGTTGTTGGCATTTGTTTCATTTTCATTTTCTTTGGGCTTGATGTGTTGTTCGCCCCAG
CGTTCCTTGTACCGGTGTTGGTTGCTTCGAAATACAAAGCGGGGGAAAAGCTTTTTTCAGTAACCATGAGTTAGTATTGA
GATCTTATGGGTTCCAGCTGTAGCCTAACTCAACTTGATTGGAGTAAATGCTTTATTGTTGTTGTTGTTTTAAAAATATT
CACAAATTCATTAACATTAAAATAGGAAAATAAAAGTGGTGAAAAAGAAAGAAAGAAAAATAAAATAAACCCAGAAAAGC
CAGTGAAAAAAAAAGAAAAAAGAAAATTTACTAATGAAATTGAAATGAATAAACCGATTAAATAAAACAGAAAAACCAAC
AGAGAAGTAAATAAAGGAAAAAGGTAAAATAAAACCCGACTTGGAAGTTTCAGAACCTTTTTAAAACCGTTCCTCCCAGC
TAACCGCTTAATAGGCTGGCCCATTCCCAGACGCTGTAACATGGACCATTCAAGGCCGGCCCACTGCGCTGCTAAGTCCC
GCTAGAACAAAGCCCCCAAACCCTCCACCCTCCGCCGCCGCCGTCTAGCTTTAGCATCCCTCCGACGAGCAGCAGCCACC
ACGGAGCGACGCTTCGGCGGGAAGGTATGATTTCGCACAATTTTCTTATTGCCAACGATCCCTTTTCCCTCCGCACTCAC
GAAGTGTAGTAAATTCCTTTTTTATCATAAAGGGAGAAAATTTGTCCAGTTGCAGTTGATGTTAATCCACATCTGACGAG
AACCCATCCCGTAGGTCGCAAGGCCGTTGCATCGGCCATCCCGCCGCTGGTAGAACCCATCCCGTAGCCGAGCGAAACTA
CCCCCTT-------------------CGCTTGTAGC-ATCCATGTATGTTGATATGTCCTGCTACAGGGCGGTAGCTATG
CGTACCATACGATTTCAGACTTTTAGGATATTTTCGGGAATTGTGTGAATTATTGAATTTCCCTGAGACATTTT-CCAGT
TTCTTGAGTTGTTTTATACTCCCTCTGTGTCTAAATATAAGCCCTTTTAGATATTCCAATACGGAAGACATATAGGGCGG
AGCAAAGTGAGTGAATCTACACTCTAAAATATGTCTATGTATATCCGTATGTAGTTCATATTGAAATCTTTAAAAGGTCT
TATATTTAGAAATGGAGGTAGTATATGAAAATCCCTGTCAGTCCAAACGAATTCTCATGGTGGAGGGGATCGAATAGAGC
GACATTCAGTCCATGCGGGGATTGTGTGGAAGGATGGTTCCCCTAGTGGGTTGTTTCCCCAACAACCAAACAAGCCCCAA
CGGGTCCCCATTCCCTTGACAGTGGTGGATAACGGAGCACGGCGAGAACATTCTG---------------TCAACTCCTC
ACCGGGATGTTCATGTTGAATAAAAGTTCAGGGCCATATATTGTATGAATAGCCTGCTGTTTATTAAAA-----AGAGTA
TCATATGACAGCATATGTTACTATTTGCAGAGCAAACAAAGAG-AAATGTTCTGAATTTTCGGTGGCTACGCAGTGTTTC
TGTGTGGAGCTAACAGTGCACATGAATTTGCGCTATCATATGTTTCCTCTAAGAGTTTTTAGTGTAGTGCAGGGAGCTTA
AGCTGTTAGATCTGTTCTTGATTTTTGTAGTGAAAATCAATACAGAAAACCTTGCTTCTAGTTAAGTACTACTTATTAGC
TAAGAGTTTTTTAAAAGTTATTTAAAATCTTTTGTTTCAGATTGTAGGACGGGAGTCCAAGCATCTAGCAGCTTGTTAGC
TACAAAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCAAAAAATTGCATAAGGATAGCGCG
GGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGACAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATTG
AGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTCTCGACCTGTTTGCTAGGAATGTCTAATAACCATAGTCTTTT
TTATTTATTTATGAATAAAAAGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGGCAGGTCGATAGAAAACTAG
CAGCCTTGCATTCTGTGGTTTAAGTAGCTCTTTTCTTGCATCTGACTGCCAGGTGAATTATGGCAACTTCATGCATGGAT
TGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCAGAGCTGTCAATGCACGAGCCATACAGCTTCAAGGCACTT
GTTGATGTATCTAGCACTGCATTTCCGGGGAACAGGCCACCTGCCCAAAAGGAAGGTCTAGCAGCTATTCTGTGAAACAG
CTTGTCCAATAAAT--CACTGCTGTCATGACGGTCTTCCGTTTTCCCTTCGTTGCAACTGAAAGTTATTACCAGTCCGCC
AATATCTTGTATCCGGGAGGTGACTCATGTAATCTCTTCTCGCCATTCCCTGTGGTATTCTCTTTAGCAGGAACACCTTT
TCAATGAATTATTGCTCATTTGGCCCCTTTGTGTTGGTCTTATAGAGGGAGTTC--------------------------
-TCTCTGTGTTACAAGTTACTAATGTTGATTGTTAATTCTGTAGCAATATGATAGAGATCGGTGACCCTTGTGTTGTG-T
CATCTATAATTGTGGCCAGCAAATACCTCTGCTTCTAAATGCATACTTGTAAAGTG--TGTGTTTAGAGAGCGAAACAAA
GGGAATGTTGCACGTCTCTTCA-TTTTCATCACAAGAGTTAAGAGTGCATGATGTTCAGAATTCTTTTGAAGTTATGGAA
TCTTCCGGCTCAATCCCAGTAAGGCCTTGTTTGTTTCAGCTTCGACTTC-------------------------------
--------TTTGCCACTGAAGTACACCGGGACGTGCTTCAAGAAAATACACTGAAGTGGCCTAGATTCAGCTTTGCCCTG
AAGCTGAAACAAACAAGGCCTAAGTCCACTGTCCTTGTTACTCTTGGTCAGTAACAGACCT-------------------
------------------------------ACCAGCCATACATTGGTGTATAGAAGAGAACTAGTAGGAGTAGTACATTT
TACTGATCAGATGGGATGCTCAAAATCTCAGCTCACTTGGCAGGGAGCGTCGCATATGCTAAAACAGATATTCTTCTCCT
GGAAATGAAGGAACAAATTTCGTGCATTCCTTTGTCCCTTTCTTTACTTTGTCAATGTTCCCAAGAGCCATCTGAGAATG
ATCTCGTACATGCACATGTGATGTGGGATACATATATTG--TCTATAACTTCAAATTCTGCTAAAACAGAATACAAATAC
TC
>chr3A_10
TAAAGGGCT----------AAAATTGTCCGGCTGCAGTTGATGTTATTCCGCATCTGACGAGATTAAGGCCGCAAGGCCG
TTGCG---------------------------------------------------------------------------
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-------------------------------TCCGCCATCCAGCCGCCTGTAGAACCCATCCCGTAACCGAGCGAAATCA
CCCCCTTAGTCATCTTGTGCCTGCTTCGCCTGTAGCCGTCCATGTATGTTTCGATGTCCTGCTACAGGGCGGTAGCAATG
GTTAACATACGATTTCAAACTTTTAGTATATTTTCGGGAATTGTGTGAATTATTGAATTTCCTGAAACATTTCCCCCAGT
TTCTTGAGTTGCTTTATGTTACA---------------------------------------------------------
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----------------------ATATGAAAATCCCTGCCAGTCCAAACGAATTCTCATGGTGGAGGGGATCGAATAGAGC
GACATTCAGTCCATGTGGGGATTGTGTGGAAGGATGGTTCCCCTAGTGGGTTGTTTCCCCAACAACTAAACAAGCCCCAA
CAGGTCCCCATTCCCTTCATAGTGGTGGATAATGGAGGAGGGCGATGACATCCAGGGCGGGGATGTTCTTTCAACTCCTC
ACCGGGATGTTCATGTTGATTAAAAGTTCAGGGCCATATATTGTACGAATAGCCTGTTGTTTATTAAAATAAAAGGAGTA
TCATATGACAGCATATGCTACTATTTGCAGAGCAAGCAAAGAGAAAATGTTCTGAATTTTCGGTCGGTACACGGTGTTTC
TGTGTGGAGCTAACAGTGCACATGAAATTTCACTATCATATGTTTCTAGTTGTCGCTCAAACGGATGTATCTAGCACTGA
AATATGTCTAGATGCATCCATTTCAGCGACAACTAACATGGGACGGAGGGAG---------------------TATTAGC
-----------TAACAAGTTTTAAAAATCTTTTGTTTCAGATTGTAGGAAGGG-GTCAAAGCATCTAGGAGCCTGTTAGC
TACAAAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCGAAAAATTGCATAAGGATAGCACG
GGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATTG
AGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTATCGATCTGTTTGCTAGGAATGTCTAATAACCATAGCCTT--
---TTTATTTATGAATAA--AGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGACAGGTCGATAGAAACTA--
--------CATTCTGTGGTTTAACTAACTCTTTTCTTGCATCTGACTGGCAGGTGAATTATGGCAACTTCATGCATGGAT
TGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCATACAGCTTCAAGGCACTT
GTTGATGTATCTCGCACTGCATTTCCGGGGAACAGACCACCTACCCAAAAGGAAGGTCTAGCAGCTATTCTGTGAAACAG
CTTGTGCAATAAATT--ACTGCTGTCATGACGGTCTTCCGTTTTCCCTTCGTTGCAACTGAAAGTTATTACCAGTCCACC
AATATCTTGTATCCTGGAGGTGACTCATGTAATCTCCTTTTGCCATTCCCTGTGGTATTCTCTTTAGCAGGAACACCTTT
TCAATGAATTATTGCTCATTTGGCCCCTTTCTGTTGGTCTTATAGAGAGAGTCCCCTTTCTGTTGGTCTTATAGAGAGAG
TTCTCTGTGTTACAAGTTATCAATGTCGATTGTTACTTCTGTAGCAATATGATAGAGATCGGTGACCCTTGTGTTGTGCT
CATCTATAATTGTGACCAGTAAATACCCCT-CTTCTAAATGCGTACCTGTAAAGTGCTTGTGTCTAGAGAGCAAAACCAA
GGGAGTGTTGCACGTCTCTTCATTTTTCATCGCAAGAGTTAAGAGTGCATGATGTTCAGAATTCTTTTGAAGTTATGGAA
TCGTCTGGCTCGATCCCAGTAAGGCCTTGTTTGTTTCAGCTTCAACTTCTGTCAAATCAGCTGTGGATTCGCTTCACTCA
GAATCAGCTTTGCCACTGAAGTACACCGGGACGTGCTTCAAGAAAATAGCCGTTTGTTTC--AGATTAAGCTTTGCCCTG
AAGCTGAAACAAACAAAGCCTAAGTCCAATGTCCTTGTTACTCTTGGTCAGTAACAGACCTCTTCTGATTATTTACACTA
AAAAGGATATCCTCTGATTACACTTCCCATACCAGCCATTCATTGGTGTATAGAAGAGAACTAGCAGTACATGTTTT---
---TGATCAGATGGGGTGCTCAGAACCTCAGTTCACTTGGCGTGGAGTAGTGCATATGCTAAAACAGAAATTCTTCTCCT
GAAAATGAAGGAACAAATTTCGTGCATTCCTTTGTCCCTTTCTTTACTTTGCTAATGTTCCCAAGGCCCATCTGACAATG
GTCA--TACATGCACATGTGATGTGAGATACATATATATTATCTATAACTTCAAATTCTGCTAAAACAGAATACTAATAC
TC
>SNPs
----S--S------------------------------------------------------------------------
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-------S-----------S--------------------S-------------------S-------------------
-------------------------S--S------------S-S----------------------S-------------
----------------------------S---------S-----------------------------------------
------------S---------------------SS--------------------------------------------
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-----------------------------------------------S-----S-----------------------S--
---------------------------------------S--S------------------------S----------S-
---------------------------------------------------------------------------S----
-------------------S----------S---------------S--S----S-------------------------
----------S--S------------------------------S---------------------------S-------
--------------------------------------------------S-----------------------------
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---------------------------------------------------------------------------S----
--------------------------------------------------------------------------S--S--
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--------------SS--------S-------------------------------------------------------
------------S-------------------------------------------------------------------
---S-----------------------------------------------S----------------------------
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-----------------------S--------------------------------S-----------------------
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-----------------------------S--------------------------------------------------
-----------------S---S----------------------------------------------S-----------
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--------------------------------------------------------------------S-----------
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--
>forward_2340
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TGTGTGGAGCTAACAGTGCG------------------------------------------------------------
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--
>reverse_3213
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------------TCGGGAGGTGACTCATGTAA------------------------------------------------
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--
