>input_sequence_76652
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--------------------------------------------------------------------ATGGCGGCGCAG
GAGGCGTCGCAGGCGCTGCGGTGGCGCTACGGCGACGTGGACGACGGCAACTTCTCCGTGCGCGGCGGCCGCGGCGTGCC
GCTGCTCGCGACGCTCTTCGCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGGCGGTACA
ACACCGACGCGACGCTTCCCATCTCATTCTCCTACCCCTCCTCGTCGCCGTCTTCCTCCGCTGCGGCGCCCGGTGCCCCC
TCCGCGGTGGCAGGCCTCGACGCTGCCGCGATAGCCGGCTTGCACGTGACGCCGTACCGTCGTCCTCCGTCGGCGTCCCC
TGGCCGCGAGGACGACGAGACGCAGTGCCCGATATGCCTCGGCGAGTTCGTGGAGGGCGAGAGGGTGAAGGCGCTGCCGC
GGTGCGGGCACTGCTTCCACCCGGAGTGCGTGGACGCGTGGCTGTGTTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCG
CTTCTCGCCGACACCTCCACCATCAAAACTGTGGACGCGAGCGAAGCTGTCTGA--------------------------
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>chr3B_1_TraesCS3B01G383200
GTGCCTGCCTCTCTTTCTGCCATTTGTTACCATCGCCCATGTGCCAAGAGGTTAAACATGTGGCGCGCTACAGTATTTCT
TTCCATGTGAATGGCTTCTTTTGAGCTCGGCAAGACCAAAAATATACTAGTAGGTTCTTCGTTCGGCTTTGGCGTGCAGT
GCCACTGCACCTAACCTTACTAAACGAGTATTATCTCGTACCGGTAGCCGAAAGAACAAGACAAGTATTTGTTCGTGTAC
ATAGTAGGAGTAGCCCACGTCCACTGAACCTTGCTAACTCTGATGCCATACGAACTTTCTG--GAGTATATGCATGGAGT
ACACGCATGAAAACAGAACACACAG-TTTATGCGCATAAATAT----ACAGATAACCTTACGGTGAAAATGACCCCATAC
ACTGATTAATCCCCGGCCGTCCATCGAGATGATTCCTTGCTTCAACTTCTAGCATACTCTGGTTCCGTGGTTCTGTGCAA
GCAGCATTGTAATGGCGTATTAGCGCGACCTCATGACAGCCACAGGGCCTTGATAAGGAGGAACATCGACGGACTAAGAT
GCTTCCAGAAATGCAAGT-TTTGCAAGCTAAGAACAACTTAATCGCCTGCGTGAGACATCATA-TATATTCTAATTCTCT
TTCGGGTCCCTTTCGAGCCCCACTCTCCATGAACGCCATCGCGCGGACAGTCGCTGCCACGTCGAATTACCCGGGATATG
GCACTCGTCAAACCTGTAAGAGGAAATGGCCACTTTTGGCGCGAGATCCGGGCGGCGGGAAAGCTTAAAACCGCCCCCCA
TCACACGAATCGCACGCACCGGCCGTCCACTTGAATACTACTTGATCTGGTGAGCGCACACTGGGGAAGCAGTACGTAGC
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---------------AGGCCCAGGAAAGCCACGCAGCCCGTGCCGACGTGCAGCTAACCCGGCCGCCAACGCGCGCGCGC
GCTTAGTTTTGTCCTGCCACGGCAGAGAAGGAAACGGTCGAGGAGGAAGAGGAAGAGGAAC----GGCATGGCGGCGCAG
GAGGCGTCGCAGGCGCTGCGGTGGCGCTACGGCGACGTGGACGACGGCAACTTCTCCGTGCGCGGCGGCCGCGGCGTGCC
GCTGCTCGCGACGCTCTTCGCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGGCGGTACA
ACACCGACGCGACGCTTCCCATCTCATTCTCCTACCCCTCCTCGTCGCCGTCTTCCTCCGCTGCGGCGCCCGGTGCCCCC
TCCGCGGTGGCAGGCCTCGACGCTGCCGCGATAGCCGGCTTGCACGTGACGCCGTACCGTCGTCCTCCGTCGGCGTCCCC
TGGCCGCGAGGACGACGAGACGCAGTGCCCGATATGCCTCGGCGAGTTCGTGGAGGGCGAGAGGGTGAAGGCGCTGCCGC
GGTGCGGGCACTGCTTCCACCCGGAGTGCGTGGACGCGTGGCTGTGTTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCG
CTTCTCGCCGACACCTCCACCATCAAAACTGTGGACGCGAGCGAAGCTGTCTGATCGACCCTGCG-------CGCTCGCG
GCAGCAGGTTCGAAACTGCACCGCTCAGCGACACTGCGACTGACATTGGAGCCCGGCCACTAATTTTCATTGCACCGAGT
CACTGATCGATGGCTGTTGCTGCTGGAGTACGTGCCAATGTTCAGGCATGGTTGATTGGTGGCGACC---GATCATTTTT
GCTGAGTGTTTTCTCTTTTCTTTGAACGGATCATTTTTGCTTAGTTAATTTGCATAC-------------CAGTGAGTTT
TTACGGGCGTTTGATATTGCCCACATCAATAATACGTAGAAACGAGCTGCATCTTTCCCTGCCCCGTTTGCATCATATCT
GCTACGCCTTTCGCCGTTTTTGCAGCTCGAT-------------------------AGAACAAATGCTACTATGTGGACC
GTGCACTTGCACCTCAGCATTGGGGCCACTTTAGCTTTCAGTTGCAGGCGACGCTGTTGTCCAGTTGGGCTTGCACGAAG
CGGAAAACCTGCATGCTTCGACCGAAGTACTGACACGAGCGAGTATACTAAACCTCTCCAGCCCACAATGTGTAGGTTTA
TTATTTTTTCGGAACGAAGACTCACGACGGGGCCATAACTA-AGCTGTGATCCTGGCCATAACCCGGGCCGGGCCTAAAA
GAGCTTGCAGCAGAAAACACAGGCCCAGTCTGTTCTTCGGGCCTAAATTTCAGGCCCAAGCCCGGACCATCGGTGAAAAA
GCTCGTTGGGCCTTAGGTCTCAGGCTGGGCCTCTTCCCTAAAACGCACGTATGTCAATCCCAAGCCCGGCCCGCCCTAGC
ATTAGGGCTCAAAATCTAGGACTAGGCCTGGCCGATGGGCAAGACCGGCCGGGCCGGGTTGGGCTATTTTGGGCCGGGTC
GGGTTGAGCCCGGTTTTCCATGGCCAG-TATAATCACAGCAAACCCCAACTTACAAACAGAAGAAAAAACAAAAAAAATA
CTCAAAAAATGGAAAAAAAAGTAGAGGATCCACAAACCAAACAGGTGATACAATGTCCTACATG
>chr3D_1
GTGCCTACTTCTCTTTCTGCCGTTTGTTACCATCGCCCATGTGCCAAGAGGTTAAACATCTGGCGT--TACAGTATTTCT
TTCCATGTGAATGGCTTCTTTTGAGCTCGGAAATACCAAAAATATACTAGTAGGTTCTTCCTTCGGCCTTGGCGTGCAGT
GGCACTGCACCCAACCTTACTGAACGAGTATCATCTCGTACCGGTAGCCGAAAGAACAAGACAAGTATTTGTTCGTGTAC
AGAGTAGGAGTAGCCCACGTCCACTGAACCTTGCTAACTCTGATGCCATGTGAACTTTCTC--GAGTATATGTATGGAGT
ACACGCCTGAAAACAGAACACCCAG-TTTATGCGC-----------------------TATGGTGAAAATGACCCCATAC
ACTGATTAATCCCCGGCCGTCCGTCGAGATGGTTCCTTGCTTCAATTACTTGCACACTCTGGTTCCGTGGTTCCGC----
----CATCGTAATGGCGTACTAGCGCGACCTCATGACAGCCACAGGGCCTTGATAAGGAGGAACATCGATCAACTAAGAT
GCTTCCAGAATTATACAAGTTTGCAAGCTAAGAACAACTTAATCGCCTGCGTGAGACATCATTTTATATTCTAATTCTCT
TTCGGGTCCCTGTCGAGCCCCACTCTCCATGAACGCCATCGCGCGGACAGTCGCTGCCACATTGAATTACCCGGGATATG
GCACTCGTCAAACCTGTAAGAGGAAATGGCCACTTTTGGCGCGAGATCCGGGCGGCGGGAAAGCTTAAAACCGCCCCCCA
TCACACGAATCGCACGCACCGGCCGTCCACTTGAATACTACTTGATCTGATGAGCGCACACTGGGGAAGCACTACGTAGC
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---------------AGGCCCAGGAAAGCCACGCAGCCCGTGCCGACGTGCAGCTAGCCCGGCCGCCAACGCGCGCGCGC
GCCTAGTTTTGTCTCGCCACGGCAGAGAAGGAAACGGTCGAGGAGGAAGAGGAAGAGGAAGCAGTGGCATGGCCGCGCAG
GAGGCGTCGCAGGCGCTGCGGTGGCGCTACGGGGACGTGGACGACGGCAACTTCTCCGTGCGCGGCGGCCGCGGCGTGCC
GCTGCTCGCGACGCTCTTCGCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGCCGATACA
ACACCGACGCCACGCTTCCCAGCTCCTTCTCCTACCCCTCCTCGTCCCCGTCTTCCTCCGCTGCGGCGCCCGGTGCCCCC
TCCGCGGTGGCTGGCCTCGACGCGGCCGCGATAGCCGGCTTGCCCGTGACGCCGTACAGTCGTCCTCCGTCGGCGTCCCC
TGGCCGCGAGGACGACGAGACGCAGTGCCCGATATGCCTCGGCGAGTTCGCGGACGGAGAGAGGGTGAAGGCGCTGCCGC
GGTGCGGGCACTGCTTCCACCCAGAGTGCGTGGACGCGTGGCTGTGCTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCG
CTTCTCGCCGACACCTCCACCGTCAAAATTGTGGACGCAAGCGAAGCTGTCTGATCGAGCCT--------GCCGCTCGCG
GCAGCAAGTTCGGAACTGCACCGCTCAGCGACTCTGCGACTGACATTAGAGCT---CCGCCAATTTCCATTGCACCGACC
GATGGC-----------TGTTGCTGGAGTACGTGCCCGTGTTCAGGCATGGTTGATTGGTGGCGACC---GATCATTTTT
GCTGAGTGTTTTTTCTTTTCTTTCAACGGATCATTTTTGCTTAGTTAATTTGCG-------------TATCAGTGAGTTT
TTACGGGCGTTTGATATTGCCCTCATCAATAATGGAAACG--CGAGATGCATCTTTCCCTACCCCGTTTGCATCATATCT
GCTACGGCTTTCGCCGTTTTTGCAGGTCGATCGGTGGAGGAGGGATGACTTGCTTCAGAACAAATGCCACTATATGGACC
GTGCACTTGCACCTCAGCATTGGGGCCACTTTAGCTTTCAGTTGCAGGCGAGGCTGTTGTCCAGTTGGGCTTGCACGAAG
CGGAAAACCTGCATGCTTCGGCCACAGAACTGACACGAGCGAGTATACTAAACCTCTCCAGCCCACATTTATTATTA---
-----TTTTTGGAACAAAGACTCACGACGAGGCCATAACTATAGCTGTGATCCTGGCCATAACTCGGGCCGGGCCTAAAA
AAGCCTGCAGCAGTAAACCAGGCCCGATCCAG-TCTTCGGGCCTAAATTTCAGGCCTAGGCCCGGACCATCAGTGGGAAA
GCCTGTCAGGCCTCGGGTCTTTGGCTGGGCCTCTTCCCTAAAACGCACGTATGTCAATCCCAGGCCCGGTCTGCCCTAGC
ATTAGGGCTCAAAATCTAGGCGCAGGCCCGGCCCATGGGCAAGACCGGCCGG-CCGGGTTGGACTATTTCGGGTCGGA--
-------------TTTCCCATGGCCAGGTATAATCACAGCGAACCACAACTTACAAACAGAAGGAAAAACAAAGAAAA--
----------------------------------------------------------------
>chr3A_1
GTGCCTACTTCTCTTTCTGCCGTTTGTTACCATCGCCCATGTGCCAAGAGGTTAAACATGTGGCGT--TACAGTATTTCT
TTCCATGTGAATGGCTTCTTTTGAGCTCGGAAATACCAAAAATATACTAGTAGGTTCTTCCTTCGGCCTTGGCGTGCC--
-------------------------------------------------------------CAAGTATTTGTTCGTGTAC
ATAGTAGGAGTAGCCCACGTCCACTGAACCTTGCTAACTCCGATGCCATACGAACTTTCTGGAGAGTATATGTATGGAGT
ACACGCATGAAAACAGAACACCCAGTTTTATGCGCATATATATACATACAGATAACCTTACGGTGAAAACGACCCCATAC
ACTGATTAATCCCCGGCCGTCCGTCGAGATGGTTCCTTGCTTCAACTACCAGCACGCTCTGGTTCCGTGGTTCTGTGCAA
ACAGCATCGTAATGGCGTACTGGCGCGACCTCGTGACAGCCACAGGGCCTTGATAAGGAGGAACATCGACGGACTAAGAT
GCTTCCAGAAATGCAAGT-TTTGCAAGCTAAGAACAACTTAATCGCCTGCGTGAGCCATCATTTTATATTCTAATTCTCT
TTCGGGTCCCTGTCGAGCCCCACTCTCCATGAACGCCATCGCACGGACAGTCGCTGCCACGTTGAATTACCCGGGATACG
GCACTCGTCAAACCTGTAAGAGGAAATGGCCACTTTTGGCGCGAGATCCGGGCGGCGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGGCCCACGGAAGCCACGCAGCCCGTGCCGACGTGCAGCCAACGCC--------CGCGCGCGCGC
GCTTAGTTTTGTCCCGCCACGGCAGAGAAGGAAACGGTCGAGGAGGAAGAGGAAGAGGAAGCAGTGGCATGGCCGCGCAG
GAGGCGTCGCAGGCGCTGCGGTGGCGCTACGGCGACGTGGACGACGGCAACTTCTCGGTGCGCGGCGGGCGCGGCGTGCC
GCTGCTTGCGACGCTCTTCGCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGCCGGTACA
ACGCCGACGCGACGCTTCCCATCTCGTTTTCCTACCCCTCCTCGTCGCCGTCGTCCTCCGCTGCGGCGCCCGGCGCCCCC
TCCGCGGTGGCTGGCCTCGACGCTGCCGCGATAGCCGGCTTGCCCGTGACGCCATACCGTCGTCCTCCGTCGGCGTCCCC
TGGCCGCGAGGACGACGAGACGCAGTGCCCGATATGCCTCGGCGAGTTCGCGGACGGCGAGAGGGTGAAGGCGCTGCCGC
GGTGCGGACACTGCTTCCACCCGGAGTGCGTGGACGCGTGGCTGTGCTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCG
CTTCTCGCCGACACCTCCACCGTCAAAACTGTGGACGCGAGCGAAGCTGTCTGATCGACCCTGCCACAGTGCCACTCGCG
GCAGCAAGTTCGGAACTGCGCCGCTCAGCGACACTGCGACTGACATTGGAGCCTCGCCGCCAATTTCCATTGCCCTGACC
GATGGC-----------TGTTGCAC--GTGCGTGCCAGTGTTCAGGCATGGTTGATTGGCGGCGACGACGGATCATTTTT
GTTGAGTGTTTTT--TTGTCTTTGAACGGATCATTTTTGCTTAGTTATTTTCCTTGGTTAATTTGCATATCAGTGAGTTT
TTACGGGCGTTTGATATTGCCCACATCAATAATAGTA--AAACGAGCTGCATCCTTCCCTACCCCGTTTGCATCATATCT
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>SNPs
------S-S------------S-------------------------------------------SSS------------
------------------------------S--S--------------------------S------S------------
-S---------S---------S---------S------------------------------------------------
------------------------------------------------------------------------S-------
---------------------S----------------S-----------------------------------------
----------------------S--------S---------------S------S-------------------------
S------S-----------S------------------------------------------------------------
--------------------------------------------------------------S-----------------
-----------S--------------------------------------------------S-----------------
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-------------------------------------------------S---------------------S--------
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--------------S---------------------------------------------S------------S------
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------------------------------------------------------------------------S-------
-------------------------S------------------------------------------------------
-----------S-------------------------------S------------------------------------
--------------------------------------------------S---S-------------------------
----------------------------------------------S---------------------------------
---------------------S------------------------------------------S---------------
------S-----S----------------------------------------SS---S-S-----S-----------SS
S-SS-SSSSSSSSSSSS--S-----------------S------------------------------------------
------------S----------------------------------------S-SS-----------------------
----------------------------------SSS-S---------------------S-------------------
------S------------------S-----------------------------------------S-----S------
---------------------------------------------------S----------------------------
--------------------S--SS--S---------------------------------------S-SSS--SSSSSS
SSSSS----S-----S-------------S---------------------------------S----------------
S---S--------S----SSS-S--S-SS-S-S-----------------------S-S------------S---SS---
--SS--SS-----SS-----SS----------------------------------------S------S-S--------
--------------------SSS-----S----S------------------S---------S------S---S---SSS
SSSSSSSSSSSSS---S-----------------------S----S-----------------S---------S----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_67
-----------------------------------------------GAGGTTAAACATGTGGCGCG-------------
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>reverse_2341
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--------------------ACCGAAGTACTGACACGAGC----------------------------------------
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