>input_sequence_76647
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-------------------------------------------------ATGGCCGCGCAGGAGGCGTCGCAGGCGCTGC
GGTGGCGCTACGGCGACGTGGACGACGGCAACTTCTCGGTGCGCGGCGGGCGCGGCGTGCCGCTGCTTGCGACGCTCTTC
GCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGCCGGTACAACGCCGACGCGACGCTTCC
CATCTCGTTTTCCTACCCCTCCTCGTCGCCGTCGTCCTCCGCTGCGGCGCCCGGCGCCCCCTCCGCGGTGGCTGGCCTCG
ACGCTGCCGCGATAGCCGGCTTGCCCGTGACGCCATACCGTCGTCCTCCGTCGGCGTCCCCTGGCCGCGAGGACGACGAG
ACGCAGTGCCCGATATGCCTCGGCGAGTTCGCGGACGGCGAGAGGGTGAAGGCGCTGCCGCGGTGCGGACACTGCTTCCA
CCCGGAGTGCGTGGACGCGTGGCTGTGCTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCGCTTCTCGCCGACACCTCCA
CCGTCAAAACTGTGGACGCGAGCGAAGCTGTCTGA---------------------------------------------
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>chr3A_1_TraesCS3A01G350500
TCCACTGAACCTTGCTAACTCCGATGCCATACGAACTTTCTGGAGAGTATATGTATGGAGTACACGCATGAAAACAGAAC
ACCCAGTTTTATGCGCATATATATACATACAGATAACCTTACGGTGAAAACGACCCCATACACTGATTAATCCCCGGCCG
TCCGTCGAGATGGTTCCTTGCTTCAACTACCAGCACGCTCTGGTTCCGTGGTTCTGTGCAAACAGCATCGTAATGGCGTA
CTGGCGCGACCTCGTGACAGCCACAGGGCCTTGATAAGGAGGAACATCGACGGACTAAGATGCTTCCAGAAATGCAAGT-
TTTGCAAGCTAAGAACAACTTAATCGCCTGCGTGAGCCATCATTTTATATTCTAATTCTCTTTCGGGTCCCTGTCGAGCC
CCACTCTCCATGAACGCCATCGCACGGACAGTCGCTGCCACGTTGAATTACCCGGGATACGGCACTCGTCAAACCTGTAA
GAGGAAATGGCCACTTTTGGCGCGAGATCCGGGCGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGC
CCACGGAAGCCACGCAGCCCGTGCCGACGTGCAGCCAACGCC--------CGCGCGCGCGCGCTTAGTTTTGTCCCGCCA
CGGCAGAGAAGGAAACGGTCGAGGAGGAAGAGGAAGAGGAAGCAGTGGCATGGCCGCGCAGGAGGCGTCGCAGGCGCTGC
GGTGGCGCTACGGCGACGTGGACGACGGCAACTTCTCGGTGCGCGGCGGGCGCGGCGTGCCGCTGCTTGCGACGCTCTTC
GCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGCCGGTACAACGCCGACGCGACGCTTCC
CATCTCGTTTTCCTACCCCTCCTCGTCGCCGTCGTCCTCCGCTGCGGCGCCCGGCGCCCCCTCCGCGGTGGCTGGCCTCG
ACGCTGCCGCGATAGCCGGCTTGCCCGTGACGCCATACCGTCGTCCTCCGTCGGCGTCCCCTGGCCGCGAGGACGACGAG
ACGCAGTGCCCGATATGCCTCGGCGAGTTCGCGGACGGCGAGAGGGTGAAGGCGCTGCCGCGGTGCGGACACTGCTTCCA
CCCGGAGTGCGTGGACGCGTGGCTGTGCTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCGCTTCTCGCCGACACCTCCA
CCGTCAAAACTGTGGACGCGAGCGAAGCTGTCTGATCGACCCTGCCACAGTGCCACTCGCGGCAGCAAGTTCGGAACTGC
GCCGCTCAGCGACACTGCGACTGACATTGGAGCCTCGCCGCC---AATTTCCATTGCCCTGAC--------CGATGGCTG
T---TGCAC--GTGCGTGCCAGTGTTCAGGCATGGTTGATTGGCGGCGACGACGGATCATTTTTGTTGAGTGTTTTT--T
TGTCTTTGAACGGATCATTTTTGCTTAGTTATTTTCCTTGGTTAATTTGCATATCAGTGAGTTTTTACGGGCGTTTGATA
TTGCCCACATCAATAATAGTA--AAACGAGCTGCATCCTTCCCTACCCCGTTTGCATCATATCTTTTTTTTTTGAAAAGA
GATTGCCCCGGCCTCTGCATCAAAAATATGCATACGGCCATCTTATTAACCAAATAAAAGATCCAACAAGTTCCAAAGTC
TCCAACTGGAAAAACTGAAAAGATAGCTCACACAGAGCCAAAATGGGCTAGATACACAGACTAGCCAAGAAAAGATGTCA
CAACCGGCTGGCTAAAGATAGATAGGTAAACTAATTGCCTATCCTATTACATGACGCCATCCAAACCGGTTGATGATATC
CTGAGCTACCATCTCCCAACGGACAGATCCAGTAACCAAATGCTCTCTGGCCTCCATCGGAGTGAGTAGCGACCACGAAC
GGATCACTGTCGTGGCTCGAAAAATAACCTGCAAAAAGTAAATACGTGATACTCCCTCCGTCCGTGAATAAGTGTACTTC
TAGCTTTTGTCCTAGGTCAAAGTTTTAGAACTTTGACCAGCTTTATAGGAAAAAGTACTAGCATTTATGACACTAAATTA
ATATCACTAGATCTATTTTGAAATGTACTTTCATAATATATTAATTTGATGTCATATATGTTATTACTATTTTGTATATA
GTTGGTCAAAATTACAAAACTTTGATTTAAGACAAAAGCTAGAAGTACACTTATTCGCGGACGGAGGGAGTATTCTGTTA
AAAACTAAATCATTT
>chr3D_1
TCCACTGAACCTTGCTAACTCTGATGCCATGTGAACTTTCTC--GAGTATATGTATGGAGTACACGCCTGAAAACAGAAC
ACCCAG-TTTATGCGC-----------------------TATGGTGAAAATGACCCCATACACTGATTAATCCCCGGCCG
TCCGTCGAGATGGTTCCTTGCTTCAATTACTTGCACACTCTGGTTCCGTGGTTCCGC--------CATCGTAATGGCGTA
CTAGCGCGACCTCATGACAGCCACAGGGCCTTGATAAGGAGGAACATCGATCAACTAAGATGCTTCCAGAATTATACAAG
TTTGCAAGCTAAGAACAACTTAATCGCCTGCGTGAGACATCATTTTATATTCTAATTCTCTTTCGGGTCCCTGTCGAGCC
CCACTCTCCATGAACGCCATCGCGCGGACAGTCGCTGCCACATTGAATTACCCGGGATATGGCACTCGTCAAACCTGTAA
GAGGAAATGGCCACTTTTGGCGCGAGATCCGGGCGGCGGGAAAGCTTAAAACCGCCCCCCATCACACGAATCGCACGCAC
CGGCCGTCCACTTGAATACTACTTGATCTGATGAGCGCACACTGGGGAAGCACTACGTAGC-------------------
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----------------------------------------------------------------------------AGGC
CCAGGAAAGCCACGCAGCCCGTGCCGACGTGCAGCTAGCCCGGCCGCCAACGCGCGCGCGCGCCTAGTTTTGTCTCGCCA
CGGCAGAGAAGGAAACGGTCGAGGAGGAAGAGGAAGAGGAAGCAGTGGCATGGCCGCGCAGGAGGCGTCGCAGGCGCTGC
GGTGGCGCTACGGGGACGTGGACGACGGCAACTTCTCCGTGCGCGGCGGCCGCGGCGTGCCGCTGCTCGCGACGCTCTTC
GCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGCCGATACAACACCGACGCCACGCTTCC
CAGCTCCTTCTCCTACCCCTCCTCGTCCCCGTCTTCCTCCGCTGCGGCGCCCGGTGCCCCCTCCGCGGTGGCTGGCCTCG
ACGCGGCCGCGATAGCCGGCTTGCCCGTGACGCCGTACAGTCGTCCTCCGTCGGCGTCCCCTGGCCGCGAGGACGACGAG
ACGCAGTGCCCGATATGCCTCGGCGAGTTCGCGGACGGAGAGAGGGTGAAGGCGCTGCCGCGGTGCGGGCACTGCTTCCA
CCCAGAGTGCGTGGACGCGTGGCTGTGCTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCGCTTCTCGCCGACACCTCCA
CCGTCAAAATTGTGGACGCAAGCGAAGCTGTCTGATCGAGCCT--------GCCGCTCGCGGCAGCAAGTTCGGAACTGC
ACCGCTCAGCGACTCTGCGACTGACATTAGAGCT---CCGCC---AATTTCCATTGCACCGAC--------CGATGGCTG
T---TGCTGGAGTACGTGCCCGTGTTCAGGCATGGTTGATTGGTGGCGACC---GATCATTTTTGCTGAGTGTTTTTTCT
TTTCTTTCAACGGATCATTTTTGCTTAGTTAATTTGCG-------------TATCAGTGAGTTTTTACGGGCGTTTGATA
TTGCCCTCATCAATAATGGAAACG--CGAGATGCATCTTTCCCTACCCCGTTTGCATCATATCT----------------
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>chr3B_1
TCCACTGAACCTTGCTAACTCTGATGCCATACGAACTTTCTG--GAGTATATGCATGGAGTACACGCATGAAAACAGAAC
ACACAG-TTTATGCGCATAAATAT----ACAGATAACCTTACGGTGAAAATGACCCCATACACTGATTAATCCCCGGCCG
TCCATCGAGATGATTCCTTGCTTCAACTTCTAGCATACTCTGGTTCCGTGGTTCTGTGCAAGCAGCATTGTAATGGCGTA
TTAGCGCGACCTCATGACAGCCACAGGGCCTTGATAAGGAGGAACATCGACGGACTAAGATGCTTCCAGAAATGCAAGT-
TTTGCAAGCTAAGAACAACTTAATCGCCTGCGTGAGACATCATA-TATATTCTAATTCTCTTTCGGGTCCCTTTCGAGCC
CCACTCTCCATGAACGCCATCGCGCGGACAGTCGCTGCCACGTCGAATTACCCGGGATATGGCACTCGTCAAACCTGTAA
GAGGAAATGGCCACTTTTGGCGCGAGATCCGGGCGGCGGGAAAGCTTAAAACCGCCCCCCATCACACGAATCGCACGCAC
CGGCCGTCCACTTGAATACTACTTGATCTGGTGAGCGCACACTGGGGAAGCAGTACGTAGC-------------------
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----------------------------------------------------------------------------AGGC
CCAGGAAAGCCACGCAGCCCGTGCCGACGTGCAGCTAACCCGGCCGCCAACGCGCGCGCGCGCTTAGTTTTGTCCTGCCA
CGGCAGAGAAGGAAACGGTCGAGGAGGAAGAGGAAGAGGAAC----GGCATGGCGGCGCAGGAGGCGTCGCAGGCGCTGC
GGTGGCGCTACGGCGACGTGGACGACGGCAACTTCTCCGTGCGCGGCGGCCGCGGCGTGCCGCTGCTCGCGACGCTCTTC
GCCGTCCTCGTCTTCTTCGTGGGCGTCTGCGTCTACCTCCGCTGGGTGTGCCGGCGGTACAACACCGACGCGACGCTTCC
CATCTCATTCTCCTACCCCTCCTCGTCGCCGTCTTCCTCCGCTGCGGCGCCCGGTGCCCCCTCCGCGGTGGCAGGCCTCG
ACGCTGCCGCGATAGCCGGCTTGCACGTGACGCCGTACCGTCGTCCTCCGTCGGCGTCCCCTGGCCGCGAGGACGACGAG
ACGCAGTGCCCGATATGCCTCGGCGAGTTCGTGGAGGGCGAGAGGGTGAAGGCGCTGCCGCGGTGCGGGCACTGCTTCCA
CCCGGAGTGCGTGGACGCGTGGCTGTGTTCGCATCCCAGCTGCCCGCTGTGCCGGGGCTCGCTTCTCGCCGACACCTCCA
CCATCAAAACTGTGGACGCGAGCGAAGCTGTCTGATCGACCCTGCG-------CGCTCGCGGCAGCAGGTTCGAAACTGC
ACCGCTCAGCGACACTGCGACTGACATTGGAGCC---CGGCCACTAATTTTCATTGCACCGAGTCACTGATCGATGGCTG
TTGCTGCTGGAGTACGTGCCAATGTTCAGGCATGGTTGATTGGTGGCGACC---GATCATTTTTGCTGAGTGTTTTCTCT
TTTCTTTGAACGGATCATTTTTGCTTAGTTAATTTGCA-------------TACCAGTGAGTTTTTACGGGCGTTTGATA
TTGCCCACATCAATAATACGTAGAAACGAGCTGCATCTTTCCCTGCCCCGTTTGCATCATATCT----------------
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>SNPs
---------------------S--------------------SS------------------------------------
------S------------S----SSSS----------------------S-----------------------------
------------------------------S-----S------------------------S------------------
--S----------S------------------------------------------------------------------
------------------------------------S-------------------------------------------
-----------------------S-----------------------------------S--------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
---S-S-----------------------------S---S-S--------------------------------------
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-------------------------------------S-----------S-----------------S------------
---------------------------------------------------------------S----------------
------S--S-----------------------S--------------------S-------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------S-----------
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---------------------------------------------SSSSSS---S-------------------------
S---------------------------------SSS--------------------S-S--------------------
-------SS----S-----------------------------S------SSSS-----------S--------------
-S-----------------------------S---S-SSSSSSSSSSSSSS-----------------------------
-------------------S-----------------S--------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_222
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------------------------------------------GTTCCGTGGTTCTGTGCAAA------------------
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>reverse_2214
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-----------------------------------------------------CCATCGGAGTGAGTAGCGAC-------
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