>input_sequence_76630
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AT-------GCCTGCCAGCAGCAC
CGAGCCGACGAAGCACATTACCCTGCACAACTTCCTGAAGCAGCAGCAGCTGCTGCAGCACCGCCTAAAGCCCACCGCCG
TGCTCTGGGGCTGGCCGGCGACGCCGCGCCCGGTGCCGGACGACGCGGCGGACGACGCCGATGGCATGGGCGGCGGGGCG
TGGCCGCCGCGCTCGTACACGTGCGCCTTCTGCCGCCGCGAGTTCCGGTCCGCGCAGGCGCTGGGCGGGCACATGAACGT
GCACCGCCGCGACCGCGCCAAGCTGCGCGGCCAGTTCGGCGCCGCGGCCGCGCAGCTGGGCGCGGCGGCCGTCTCCGAGG
CGCCCGCAGCCGCCGCGGCGACCACCGAGTACGCGCTGCTGTACCCCGTGCTCAACTCCACCGCCGCCGGCGCGCGGGCC
GTGTTCATCCCCAGCGACGACGTGCTGCTCTCCACGCCCGTGGCAATGGCGCACGGCCACCGGTGCCAGCAGAGCGACGA
CGAGAACGACACGGACATTGACCTGGAGCTGCGCCTCGGGTGGCCGTGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr2A_1_TraesCS2A01G449200
GAACAAGTTTTACGGATTAGAAGTTACAGAGTGAAATGACATGAACTGATATGGGGGTGGCCGGCTCCATAGTGGAATGC
AAGGGGTGGGGCGAATTAAGGAGGGCCGCATCCGTCCGTAAAAATTGCCCG--------------TACGTTGAGCATTTT
CACCGAAACCCAAACTTATAACAGTTATACCTGGCCATGGGATACCCGACCCGGCCCTATCTTGCTCACGGGCCAGCCAT
GGGCCTGAGATCTAGACCCGATGGCCGGGCCGGGCCTAGGCTTGACATATTTGTGATTTAGAGAAGGGCCCGACCCGATG
CCCCAAAGCCTGGCGGGCTTTTCCGCTGATGGACTTGGCCTGGGCCTGATATCTAGGCCAGACGGCCGGGCCAGGTCCGG
GCCTAGGTTTTTTGTAGTAGGCTTTGTTAGACCCGACCCGACATATGGCGAGGTATAATAATAGTACACAAATATGGTAG
TCTTACGTATACTTTTACAAAAACTTTTACGCACTGGGAGGGCGGAGAGGGATAGTAACCACCTGGAGCTAAACATGGGA
ATAACCGTCGTCCGATTGTGCTGGTGTGTATGCTTTTTGTAGATGTGTTACGTAAAAATAGCATTGCTCGTACAGTACAG
TGTGTGAACCCTCTGCGTTGGAGGCAGGAGCCGTACGTACACAACACAACCGTAGCTTGAGCTTTCCTTGGATAGCTATT
GATCGTATCAGCTGCGCCCCCAGCATGCATGCACACACAGGTGATACTACCCATGCCATAGTTTGCGCAAGTTTCTGTGT
GTCGCAACC-TCGCAGACATGAACAAAA-GCTCACAACGCGCGACACAACCGATGCGATCCCATCCCTTCCGTCTCTTCC
AAAACCCCACAACCCCCACCGCCTCACTAGCAGCCTCTATAAATGCCCGGCGACGCAGCCGCACGAATGTCCCGTCAGTC
CACGGGAGCAAACATCTCAAGCTGACACGGGAGCTGAGCTAAGCCGACCTGCCGCGAT-------GCCTGCCAGCAGCAC
CGAGCCGACGAAGCACATTACCCTGCACAACTTCCTGAAGCAGCAGCAGCTGCTGCAGCACCGCCTAAAGCCCACCGCCG
TGCTCTGGGGCTGGCCGGCGACGCCGCGCCCGGTGCCGGACGACGCGGCGGACGACGCCGATGGCATGGGCGGCGGGGCG
TGGCCGCCGCGCTCGTACACGTGCGCCTTCTGCCGCCGCGAGTTCCGGTCCGCGCAGGCGCTGGGCGGGCACATGAACGT
GCACCGCCGCGACCGCGCCAAGCTGCGCGGCCAGTTCGGCGCCGCGGCCGCGCAGCTGGGCGCGGCGGCCGTCTCCGAGG
CGCCCGCAGCCGCCGCGGCGACCACCGAGTACGCGCTGCTGTACCCCGTGCTCAACTCCACCGCCGCCGGCGCGCGGGCC
GTGTTCATCCCCAGCGACGACGTGCTGCTCTCCACGCCCGTGGCAATGGCGCACGGCCACCGGTGCCAGCAGAGCGACGA
CGAGAACGACACGGACATTGACCTGGAGCTGCGCCTCGGGTGGCCGTGAACCGGAGAGACGTGCCCGCCTTTTGCTAGCT
C-CTTCGTTACGTGTGATTCTTTATTCGTCTTCCAGTTCGAGCCATTTTT-GCATCGAATGAATAATGGCATAAGATTAC
CCGACAAAACCGCCATTGAACAAAGCCTCCAAAGGGGAGACGACGAG--GACAAG--AAAAAAAAGGGTGCAAAGT---A
GTACAAAATATATGTCATGTCGTATAATATATGTGGGCCTCGGCGCCTCGATTGATCATAGATTTGGTTTCCATCATCGT
TTTGTTTTTCACCGGCAGGGTTTAGGCGACAGG------CGACAGTTATGATGTGACACCGAGGAGTTCTGTCTCGGGAT
GCCCATCTAGAAGCCAGCATATTCAATAGATTTTTCAATTTATTTTGGTTCCTTTAATCTATGATGAAGTGAAATTACAT
TTCAACGACATACTTGCAGAGATTTACTTCGGTTTTATTATAGGGGATACCGAATTTCAGATACAACATGTATGGAGCAA
CACTAGCTACAACTACGAAGGATTGCAAATCATATGCAAAATAGAATCTAACTCATCTA----AGGTCCATCTCACCGGA
GTTTCATCAAACCTGCCTAATACATGCCCAAATCGGTAATCCACCAATACTGAAGTCTAGATGTTGAATTTTCAGCAGTG
TTCTCATTCT--TCAGGCAATTTTACCCAGGTTACTGGTAGACAGTAAATTCAGACAATCCTATGCCACACAGCTATTGC
GGTCACCAATTCTAATATGTTGATTCCAGTGGAAGTTTTAGAGCTCATGCAACAACAGAGTTTGCAGGCATTGCAGCAAT
ACATCTT-AATACGAGAAAGATGTCCAAGGTAATGTGATTTCTAGTCGATACCATTCCGATGCCATCAGTTGATTTCTTC
TAGGAAAATTTAAACCAAACACACCATTGTCTAT-----TATTAGTGGTACTAGTACACAACAGATTGAGAGAATCGTAT
GCCACTCAGCTATTTAGATCACCAGTTCTAAATTAC
>chr2B_86
--------------------------------------------------------------------------------
-----GTGTGGCGAATTAAGGAGGGCCGCATCCGTCCGTAGGAGTCAGTCCGTAAAAACTGTCCATACGTTGAGCATTTT
CGCCCAAACCCAGACTTATAACAGT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ACACAAAAATGGTAT
TCTTGCGTATACTTTTACAAAAACTTTTAGTACTG--------GGAGAGGGATAGTAACCACCTGGAGCTAAACATGGGA
ATAACCGTCGTCCGATTGTGCTGGTGTGTATGTTTTTTGTAGATGTGTTACGTAAAAATAGCATTGCTCGTACAGTACAG
TGTGTGAACC--CTGCGTTGGAGGCAGGAGCCGTACGTACACAACACAACTGTGGCTTGAGCTTTCCTTGGATAGCTATC
C----TATCAGCGGCGCCCCCCGCATGCATGCACACACAGGTGATACTACCCATGCCACGGTTTGTGCAGGCTTCTGCGT
GTCTCAGCCGTCGCAGACATGAACAAAAAGCTCACAACGCGCGGCACAACCGATGCGATCCCATGCCTTCTGTCTCTTCC
AAAAAG----------------CTCACTAGCAACCTCTATAAATGCCCGGCGACGCAGCCGCACGAATGTCCCGTCAGTC
CACGGGAGCAAACATCTCAAGCTGACACGGGAGCTGAGCTAAGCTGACCTGCCGGGATACATGGCGCCTGCGAGCAGCAC
CGAGCCGACGAAGCACATTACCCTGCACAACTTCCTGAAGCAGCAGCAGCTTCTGCAGCACCGCCTCAAGCCCACCGCCG
TGCTCTGGGGCTGGCCGGCGACGCCGCGCCCGGCGCCCGACGACGCGTCGGACGACGCCGACGGCATGGGCGGGGGCGCG
TGGCCGCCGCGCTCGTACACGTGCGCCTTCTGCCGCCGCGAGTTCCGGTCCGCGCAGGCGCTGGGCGGGCACATGAACGT
GCACCGCCGCGACCGCGCCAAGCTGCGCGGCCAGTTCGGCGCCGCGGCCGTGCAGCTGGGCGCGGCGTCGGCGGCCGAGG
CGCCCGCCACCGCCGCGGCGACCACCGAGTACGCGCTGCTGTACCCCGTGCTCAACTCCACCGCCACCGGCGCGAGGGCC
GTGTTCATCCCCAGCGGCGACATGCTGCTCTCCACGCCCCTGGCAATGGCGCACGGCCACCGGTGCCAGCAGAGCGACGA
CGAGAACGACACGGACATTGACCTGGAGCTGCGCCTCGGGTGGCCGTGAACGGGGGAGACGCGCCCGCGTTTTGCTTAGT
TGCTTCGTGACGTGTGATTCTTTATTCGTCTTCCAGTTCGAGCCA-TTTT-GCATCGAATGAATAATGGCATAAGATTAC
CCGACAAAACCGCCATTGGACAAAGCCTCCAAAGGGGAGACGACGAGAGGAGAAG--AGAAAAAAGGGTGCTAAGTTACA
GTACAAAATATATGTCAGGTCGTATAATATATATGGGCCACGGCGCCTCGATTGATCACAGATTTGATTTCCATCATCGT
TTTG-TTTTCACCGGCAAGGTTTAGGGTATATATTTTCCCGACAGTTGTGATGTGACACCGAGGAGTTCTGTCTCAGGAT
GCCCATCTAGAAGCCAGCATACTCAACAGATTTTTCAATTTGTTTTGGTTCCCTTAATCTATGATGAAGTGACATTACAT
TTCGACCACAAACTTGCAGAGATTTACTTCAGTTT-ATTACAGGGGATACCGCATTTCAGATACAAAATGTATGAAGCAA
CACTAGCTACGACTACGAAGGATTGCAAATCATATGCAAAATAGAATCCAGCTCATCCAAGTTAGGTCCATTTCACCGGA
GTTTCATAAAACCTACCTAATGCATGCCGAAATCGGTAATCCACCAATACTGAAGTCTAGATGTTGTATTTTCAGCATCG
TTCTCATTCGTTTCACGCAATTTTACCCAGGTTACTGGTAGACAGTAAATTCAGATAATCCTATGCCACACAGCTATTTC
GGTCACCAATTCTAATATGTTGATTCCAGTGGAAGTTTTAGAGCTCATGCAACAACAGAGTTTGCAAGCATTGCAGCAAT
ACATCTTGAATACAAGAAAGATGTCCAAGGTAATGGAATTTCTAGTTGATACCATCCCAATGCCATCAGTTGATTTCTTC
TAGGACAATTTAAACCACA----------CACCATTGCCTATTAGTGGTACTAGTACACAATAGATTGGCAGAATCGTAT
GCCACTCAGCTATTTAGATCACCTGTTCTAAATTAC
>chr2D_510
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GGAGAGGGATAGTAACCACCTGGAGCTAAACATGGGA
ATAACCGTCGTCCGATTGTGCTGGTGCGTATGCTTTTTGTAGATGTGTTACGTAAAAATAGCATTGCTCGTACAGTACAG
TGTGTGAACCCTCTGCGTTGGAGGCAGGAGCCGTACGTACACAACACAACCGTGGCTTGAGCTTTCCTTGGATAGCTATT
GATCGTATCAGCTGCGCCCCCAGCATGCATGCACACACAGGTGATACTACCCATGCCACAGTTTGCGCAAGCTTCTGCGT
GTCGCAGCCGTCGCAGACATGAACAAAATGCTCACAACGCGCGACACAACCGATGCGATCCCATCCCTTCCGTCTCTTCC
AAAACCCCACAACCCCCACTGCCTCGCTAGCAGCCTCTATAAATGCCCGGCGACGAGACCGCACGAATGTCCCGTCAGTC
CACGGGAGCAAACACCTCAAGCTGACACGGGAGCTGAGCTAAGCTGACCTGCCGCGAT-------GCCTGCCAGCAGCAC
CGAGCCGACGAAGCACATTACCCTGCACAACTTCCTGAAGCAGCAGCAGCTGCTGCAGCACCGCCTCAAGCCCACTGCCG
TGCTCTGGGGCTGGCCGGCGACGCCGCGCCCGGCGCCGGACGACGCGGCGGACGACGCCGACGGCATGGGCGGCGGGGCG
TGGCCGCCGCGCTCGTACACGTGCGCCTTCTGCCGCCGCGAGTTCCGGTCCGCGCAGGCGCTGGGCGGGCACATGAACGT
GCACCGCCGCGACCGCGCCAAGCTGCGCGGCCAGTTCGGCGCCGCGGCCGCGCAGCTGGGCGCGGCGGCCGTCTCCGAGG
CGCCCGCCACCGCCGCGGCGACGACCGAGTACGCGCTGCTGTACCCCGTGCTCAACTCCACCGCCGCCGGCGCGCGGGCC
GTGTTCATCCCCAGCGGCGACGTGCTGCTCTCCACGCCCGTGGCAATGGCGCACGGCCACCGGTGCCAGCAGAGCGACGA
CGAGAACGACACGGACATTGACCTGGAGCTGCGCCTCGGGTGGCCGTGAACGGGGGAGACGCGCCCGCCTTTTGCGTAGT
TGCTTCGTGACGTGTGATTCTTTATTCGTCTTCCAGTTCGAGCCA-TTTTTGCATCGAATGAATAATGGCATAAGATTAC
CCGACAAAACCGCCATTGGACACAGCCTCCAAAGGGGAGACGACGAGAGGACAAGAAAAAAAAAAGGGTGCGAAGT-ACA
GTACAAAATATATGTCAGGTCGTATAATATATATGGGCCTCGGCGCCTCGATTGATCACAGATTTGATTTCCATCATCGT
TTTG-TTTTCACCGGCAGGGTTTAGGGTATATATTTCTCCGACAGTTATGATGTGACACGGAGGAGTTCTGTCTCAGGAT
GCCCATCTAGAAGCCAGCATATTCAATAGATTTTTCAATTTATTTTGGTCCCCTTAATCTATGATGAAGTGACATTACAT
TTCAACGACAAACTTGCAGAGAATTACTTCAGTTTTATTATAGGGCATATCGCATTTCAGATACAACATGCATGAAGCAA
CAGTAGCTACAACTAGGAAGGATTGCAAATCATATGCAAATTAGAATCCAACTCATGTAAGTTAGGTCCATTTCACCGGA
GTTTCATCAAACCTACCTA--GCATGCCGAAACCGGTAATCCACCAATACTGAAGTCTAGATGTTGAATTTTCAGCATTG
TTCTCATTCGTGTCAGGCAATTTTACGCAGGTTACTGGTAGACAGCAAATTCAGATAATTCTATGCCACACAGCTATTCA
GGTCACCAATTCTAATATGTTGATTCCAGTGGAAGTTTTAGAGCTCAT-----AACAGAGTTTGCAGGCATTGCAGCAAT
ACATCTTGAATACGAGAAAGATGTCCAAGGTAATGGGATTTCTAGTCGATACCATTCCGATGCCATCAGTTGATTTCTTC
TGGGACAATTTAAACCACACACAGTCACACACCATTGCCTATTAGTGGTACTAGTACACAACAGATTGAGAGAATCGTAT
GCCACTCAGCTATTTAGATCGCGAGTTCTAAATTAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---S-------------------------------SS-S-SSSS-S-----------------------------
-S--S-------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S
----S------------------------SSSSSSSSSSSSSS-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
----------------------------------------------------------S------------S-----S--
------S-------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------S-----------------------------------
------------------------------------------------------------------S-------------
---------------------------------S---------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------SS-----------------------------------------------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------------S--S------S--------------SSS-
S-------S------------------------------------S----------------------------------
------------------S----------------------------------------------------S--------
-----------------S--------------S-------------------------S-------S-------------
----S---------------------SS-S-SS------------------------------------------S----
----------------------------------------------------S-------------------S-------
----------S-------------------S---------------------S---------------------S-----
------------------------------------------------S----------------------S--------
--------------S------S------S------------------------------------------------S--
---------S---------------------------------------------S----------------------S-
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-----S-----------S-----SSSSSSSSSSS----------------------------------------------
------------------------------------
>forward_522
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ACTTTTACGCACTGGGAGGG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_1916
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GGGAT
GCCCATCTAGAAGCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
