>input_sequence_76619
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----------------------------ATGGCCGGCCGGAGCAGCAGCCGTTCCATGGTGTCCGCGCACCGGCTCTTCG
CGCCGGCGCCCGCGCGCACCCTGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGC
GCGGCGCTGGCGTCTTCCCCGCCGGCCGACGCGTACGGGCGGGCCCTGTCCGCGTCCACTCCCTCCAGGGCCTCCAAGCC
GCGCGCCGCGGCGCCGCGGGATGCCGCCGGTGGCGGTGGCGGCGTCGGGGGCCCGGCGTCGCTGCCCGTCAACATCCCCG
ACTGGTCCAAGATCCTGGGGGCGGAGTACGGCGGGGGCAGCGCCGGCGCGGGGCGGTGGCCGTCGGACGATCGCGGGGAC
GCGTACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTT
CTCGGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCG
GCTTCCAGGACTGA------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G157900
CAGCGCCCTCCACTCCCGTTCGTAGAGGAGATAGGAGGGCACGTCGTCGTGGATCCGCGTGGCTCACTCCGTCCACCTCC
GCATCCTCGTCGCCCGCAGCGCCTCCGGCGATACCGACCCTATCGGCCGCAGCATCTCCGGGAAGGCCCGGTACACAAAG
GGGGAGGCATGTATGGGATTGTCGAGCCCGGGCGAGGTGGCGAGCAGGTGGATCTGTCGGCTCTCAGCATGTGGGGCGGG
GAGGCTCGCCGTCGCGGGGAGATCGGCGGCGAGGTGAGGTGGGTGGGATGGGTGGGGTGGAGTGGAGTCGCGGTCGCAAG
TGAGAGCATGAGTCGCCTTATTTCTCGTCACGTAGATCCTACAATTTTTTTTACTGCCTGGTTACCACAATAAATGGATC
TGCTGGCCTCTTCACTATTTACGCATGGCCTTGATTTGCCCACGGATTTCAAAGAGGACACGATCCCCTTTTCCTTTTTG
CGGGCAGAAGAGGACAGGGTCTCATGGGTTCGTTGGATGGCCAGCAGCTACT----------------------------
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------------------------------------------------------ATGTATACTCATGTGCAAAAACGCAA
GCGAAGCAAATACTCCGCGCCCATACCTCGGCCAAATTCAAGCCATTTCTGG---------CTCCATTCACTCGCAAACA
ACGAAACAGTACTACGCTCCTCCCATGACACCGCAATGCTGCGACACACTGGCATCTTAAAAAAAATGCAG---------
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------------------------------------------------TACTAGTACACCGGCAGCAACGATGGCAGACG
CCGTAAATATGCTCAACCAGGCCCCCCATTAAAGTCACTCCGCGAAACAAACCTTATCCACACCACTCCCCCGTCCCTCT
CCCGCCGCTATAAAACCCGCCGCTCCACTCCACCAGTTGGAGTAGGAAGAAGAACAAAACGCCATCGCGGTTCACATACA
CTTTTACACACGGCAGCACACGGAACACGCACACACGTTGCTTGTGCGCCTCCTCCGCCGGATCACGAGCCAACCGCACC
GAGGTCGGCGGGGTAAGAGCGCGCGACGATGGCCGGCCGGAGCAGCAGCCGTTCCATGGTGTCCGCGCACCGGCTCTTCG
CGCCGGCGCCCGCGCGCACCCTGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGC
GCGGCGCTGGCGTCTTCCCCGCCGGCCGACGCGTACGGGCGGGCCCTGTCCGCGTCCACTCCCTCCAGGGCCTCCAAGCC
GCGCGCCGCGGCGCCGCGGGATGCCGCCGGTGGCGGTGGCGGCGTCGGGGGCCCGGCGTCGCTGCCCGTCAACATCCCCG
ACTGGTCCAAGATCCTGGGGGCGGAGTACGGCGGGGGCAGCGCCGGCGCGGGGCGGTGGCCGTCGGACGATCGCGGGGAC
GCGTACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTT
CTCGGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCG
GCTTCCAGGACTGATCCTGATCC-GGCCCACCCACGGCGATCGATCGTCCGTCCCCTTACGATTAATTTGATGAGTTTTT
TTCTTTTCTTCTACGAGTAGTTTGTGATCGGTGATGAGAATGAGATGAGATGCAGGGAGAGTAGTAGAGATTGGTTAAGC
CTCTGGTTTTGGCAGTTTTCCCCGGAGAGGCTGGCTGGCTCGATGTACTACCGCTT------------AATCGATTGCTC
CTTAACAAAGATGATGAGTACGAGTTGTACCAGCACTGTCCATGTGCTGCCCACTGATTTCTTGCTGGTTAACCACTGAT
CTATAATGATCTGCCATCACCAGCA---GTAGTACTAGTACTACTAAAATGATCTGCCACCTGCAGAGAAAACTGGTTGG
TGCAGATAGGCGTAGTAGTACTACTGTTTGTAAAGATTCCAGAGAAATTAGTTGTAGGTAGAGTGAGCTGTTGGGATTAT
TGGCAGAGCAGATTTTCGATTTAAAAAGGGAGCCTAGTCTATCGGGGGAGTTGGGGGCAGATTTGGACGTGCGGAGAATA
AAATTTGTAAACAAATCGCATGCGAAATGGATAGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGAGATG
GAGAAAGTGGGAGGGGCCCTGATTGGACGATGGGGGAGAAATGTCGACACTTCGCATTAACTAGTTAGTTCGCCCGCATA
CTTAACTGCAAAGTACT---------------------------------------------------------------
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------------------------AGCATTGCCTCCAAAAAGAAGGAATAAAAATAGCGACCCGAGTAGCAGAGCAGGAA
TATGAACAAACACCTCACGTTTAGTCTTGCAAGGGCAACCAATGGTTTGGTAGATCACAGCTGATGAAGACGTCAGAGAA
AGCTACCGGTC-AAAAACACCGCGTACACAAGGTCTC-------------------------------------------
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-------------------------------------------------------------------------GTATAGA
ATTTCAGCTGTGTTTGTATGACTTTGGACCTCATGCAGCATGTATCACTTTGAAACTCATGCTGGCTCACATTTCTTCTA
ATGGACCGCCTTTTTTTTAGAATATGGACCGCCT
>chr1B_360
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---------------------------------------TACAGTTTTTTTCACTGCCCAGTTACCGCAATAAATGGATC
TGCTGGCCTCTTCACTCTTTACGCATGGCAGTGATTTGCCCACGGATTTCAAAGAGGACACGACCCCCATTTTCTTTTTG
CGGGCAGAAGAGGACATGGTCTCATGGGTTGGTTGGATGGCCAGCAGCTACTCCCTCCGTTCCTAAATACTTGTCTTTTT
AGAGATTTTAACAAATGACTACATACGGCGCAAAATAAGTGAATCTACACTTTAAAATATGTCTACATACATCCGTATAT
TGAGTCCATTTGAAATGCCTAGAAAGACAAGTATTTGGGAACGGAGGGAGTACTATGTATACTCCTGTGCAAAACCGCAA
GCGAAGCAAATACACCGCGCCCATACCTCGGCCAAATTCAAGTCATTTCTGGCTCCATCGTCTCCATTCACTCGCAAACA
ACGAAACAGTACTACGCTCCTCCCATGACACCGCAATGCTGCGGCACACTGGCATCTTAAAAAAAATGCAG---------
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------------------------------------------------TACACT------GGCAGCAACGATGGCAGACG
CCGTAAATATGCTCAACCAGCCCCCCCATTAAAGTAACTCCGTGAAACAAACCTTATCCACAGCACT--CCCGTCCCCCT
CCCGCCGCTATAAAACCCGCCGCTCCACTCCACCAGTTGGAGTAGGAAGAAGAACAAAACGCCATCGCGGTTCACATACA
CTTTTACACACGGCAGCACACGAAACACGCGCACACATTGCTTGTGCGCCTCCTCCGCCGGATCACGAGCCAACCGCACC
GAGGTCGGCAGGGTAAGAGCACGCGACGATGGCCGGCCGGAGCAGCAGCCGTTCCATGGTGTCTGCGCACCGGCTCTTCG
CGCCGGCGCCGGCGCGCACCATGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGC
GCGGCGCTGGCGTCGTCCCCGCTGGCCGACACGTACGGGCGGGCCCTGTCCGCGTCCACTCCCTCCAGGGCCTCCAAGCC
GCGCGCCGCGGCGCCACGAGATGCCGCCGGTGGCGGTGGAGGCGTCGGGGCCCCGGCGTCGCTGCCTGTCAACATCCCCG
ACTGGTCCAAGATCCTGGGGTCGGAGTACGGCGGGGGCAGCGCCGGCTCGGGGCGGTGGCCGTCGGACGATCGCGGGGAC
GCGTACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTT
CTCCGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCG
GCTTCCAGGACTGATCCTCATCCCGGCCCGCCTCG-------------CCGTCCCCTTACGATTAATTTGATGAGTTTTT
TT--TTGTC--------TAGTTTGTGATCGGTGATGAGAATGAGATGCAGCGGATG----GTACTAGAGATTGGTTAAGC
CTCTGGTTTTGGCAGTTTTCCCCGGAGA----GGCTGGCTCCATGTACTACCACTAAAACAACCAGCGAATCGATTGCTC
CTTAACAAAGATGATGAGTACGAGTTGTACCAGCAATGTCCATGTGCCGTCCACTGATTTCTTGCTGGTTAACCACTGTT
CTATAATGATCTGCCATCACCAGCACTCCAGC----AGTACTACTAAAATGATCTGCCACCTGCAGAGAAAACTGGTTGG
TGCAGATAGGCGTGGTAGTACTA---TTTGTAAAGATTCCAGAGAAATTAGTTGTAGGTAGAGTGAGCTGTTGGGATTAT
TGGCAGAGCGGAC--TCGATTTAAAAAG------------------GGAGTTGGGGGCAGATTTGGACGTGCGGAGAATA
AAATTTGTAAACAAATCGCATGCGAAATGGATAGGGAAGAGAGAGAGAGAGAAAGA----------------GAGAGATG
GAGAAAGTGGGAGGGGCCCTGATTGGACGATGGGA-CGAAATGTCGACACTTCGCATTAACTAGTTAGTTCGCCCGCATA
CTTAACTGCAAAGTACT---------------------------------------------------------------
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------------------------AGCATTGCCTTCAAAAAGAAGGACTAAAAATAGCGACCCGAGTAGTATAGCAGGAA
TATGAACAAACACCTCACGTTTAGCCTTGCAATGGCAACCGATGGTTT---AGATCACGACTGATGAAGACTCCAGAGAA
AGCTACCGGTC-AAAAACACCGCGTACACAAAGTCTCGTACTCCCTCCTTCCATCTATATATAGAGACTAATGCATTTTT
TGAGACTAACTTTGATAAAATGTTAGAGAATAATATATGACACGTAAGTTACACAAAGCATACCGTTAAAAGAGCTTTCA
CTGATATAATCTTATCAATAGTCAAAGACGGTCTAGAAAAACACATTAGGCCCTATATAGATGGAAGGAGGGAGTATAGA
ATTTCAGCTGTGTTTGTATGACTTTGGACCTTATGCAGCATGTATCACTTCGAAACTCATGCAGGCTCACATCTCATCTA
ATGGACCGCCTTTTTTTT----------------
>chr1D_410
CTT-----------------------------------------------------------------------------
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-------------ACTCTTTACGCATGACAGTGATTTGCCTACGGATTTCAAAGAGGACACGATCCCCATTTTCTTTTTG
CGGGCAGAAGAGGACACGGTCTCATGGGTTCGTTGGATGGCCAGCAGC--------------------------------
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--------------------------------------------------TACTATGTATACTCCTGTGCAAAACCGCAA
GCGAAGCAAATACACCGCGCCCATACCTCGGCCAAATTCAAGCCATTTCTGGCTCCATCGTCTCCATTCACTCGCAAACA
ACGAAACAGTACTACGCTCCTCCCATGACACCGCAATGCTGCGACACACTGGCATCTTAAAAAAAAGTAAATACACGAAG
AGTCATAGAACTTGCACGTGACGTTCAGTTTGGTGCATAAAGTCGTAAAATACATGTTTCTGGTCATCTAACTTGTCTTC
TCGTTCATATACGGTGCTTTCTATCGTATCCGGCCGTATCCCACGCACACCTGGCGTGCCAACGTTGTGGGGTTCCATTT
TCACTGTTTTTCAACCCTTGCATTTTATTTATTTATGCAGAAAATTCTCAAATAAAATTAAAACCAAACTTTTCTGAACC
CTTGCATTTTACCTACACGGACAATTCTCAAATGAAATTGAAAACGCGGCTACATGCTGGGCTTCGAACTACTCGACTAA
CATGATGTTTGGCGATTAGTACGCACAGTTAGCTCCATATTATATGGATAGTACGAAGAAGTAGAAATTAAAACAGGAAA
AGCTGTGCAAAAAAGGGATGGCCCCGGTTCAAACCTATGACCTCCTGGCTAGCTCGCCGCATGTGCAGTTAAAGAGATAT
ACACGATTTCTCTTTTGTATCCTTTCTTTTTTCTATCTAAGAAAATAACTTATATTCTAGATAAACTTTTCGGACAAATC
ATTAAACTTTTCCGCGCAAAGAAAATCATTAAACTTTTGTTTGAATTCGCACAAAATAAAATTTGAAAAATCTAGATAGA
AGAAATATAGGGCAGAATGAATGTAAATAATTTTTAGACAAAGAAACTACATTTTTTAAATTCGAATAATTTTAACTTAA
ACAATCTAGTGCAGAATGAATGAGCGCATTATTTTGGACAAATAGACGGAAATTGTGTTTGAATTCAAATAATTTTAAGT
TTTTAAATCTAGATAAAGGAAAATATAGGTCAGAATGCTTGTACATAAATTTTTCAGACAAATGAACTATTTCTTCTGAA
TTCGAATAATTAAAAATTTAAAAATCTAGATAAAAGAAAATATATTGCAGAATAAATGTACATATATTTCTTTAAGGCAA
ATTAGGGTTTTTTTTCGAATTTGAATAATTTTAAAGTTGAAAATCTAGATAAATGAAATATAGTTCAGCTGATTTGTCCA
AAAGAATTTTAAAATTTGAACAATTTTATATTTGAAAAAAACGATCGCTCAAACAGAATGATTCCACTCTCCCCGTGATA
ATGTGCATAAATTTCTATTACCCGCGTAGTTTTCTTAAATAGGACAAGATTAATAACAACATACACACGAACATTTCCCC
GCATGAATATTTTTTTGAAATGCATGAACATTTTTAAAATGCAACTTACTTTTTTAATTACACAAATATTTTTTACAATT
TTTAATTTTTTAAAATATCACATACTTTTTTTACAACATAGAACATTTTTGAAACGTCACAAACAACAAAAATATATGTT
GTTTTCTTACATCATTTTATTCCTCCGGGGAATTACACGAACATGTTTTTAGTTTTGGTTTATTCCTTTGTTGGGCTGAG
CGAACATTGTATAAAAGAAAATTTTGTTTGTGAGTTTGATGTCAATTTATTCTCGGTCGAGTGGCTAGTGCAGTTATCTC
TTAGTTTGCTGGACATCCGTTCTAGTCCCCTGGCGCTATTTTATTTGTCTTTCTTGAAAGATACTGTGTGCCTACACGTG
CGTAATTAAATAAAAATTGAGGATGTTTTTTGCAAAAGAAAGATAATGCATGGCTCACCCAACACCTCACCACTCACCGC
CACCGACATGTGGGCCGTATTCATGCTGACACGACACATGAGCACAAGATACGGCTAGATACGAAAGAAGTGGCCGTATC
TGCACGCATAGGCAAGTTATGTGACCGCAATGACGTACGACGTATTTTACAACTTTTAGCACCAAACCGAACATCATATG
CAAGTTATATGACTGTTATTGATATTACCTCTTAAAAAAATGCAGTATTACTAGTACACCGACAGCAACGATGGCAGACG
CCGTAAATATGCTCAACCAGGCCCCCCATTAAAGTCACTCCGTGAAACAAACCTTATCCACACCACT--CCCGTCCCCCT
CCCGCCGCTATAAAACCCGCCGCTCCACTCCACCAGTTGGAGTAGGAAGAAGAACAAAACGCCTACGCGGTTCACATACA
CTTTTACACACGGCAGCACACGGAACACGCACACACATTGCTTGTGCACCTCCTCCGCCGGATCACGAGCCAACCGCACC
TCAGCCGGCGGGGTAAGAGCGCGAGACGATGGCTGGCCGGAGCAGCAGCCGTTCCATGGTGTCCGCGCACCGGCTCTTCG
CGCCGGCGCCGGCGCGCACCCTGCAGCACGCGGCCGACCCGGCCCTGGAGCTCGACGAGGCCGACATCATCTGGGGCGGC
GCAGCGCTGGCGTCGTCCCCGCCGGCCGACGCGTACGGGCGGGCCCTGTCCACGTCCACTCCCTCCAGGGCCTCCAAGCC
ACGCGCCGCGGCGCCACGAGATGCCGCCGGTGGCGGTGGAGGCGTCGGGGGCCCGGCGTCGCTGCCTGTCAACATCCCCG
ACTGGTCCAAGATCCTGGGGTCAGAGTACGGCGGGGGCAGCGCCGGCGCGGGGCGGTGGCCGTCGGACGATCGCGGGGAC
GCGTACCTGGACCGCGGCGACCGGCAGTGGGTGCCGCCGCACGAGCAGCTCATGTACCGGGAGCGCGCCGCGGCGTCCTT
CTCCGTGCGCGAGGGCGCCGGGCGCACGCTCAAGGGCCGCGACCTCCGCCGCGTCCGCAACGCCATCTGGGAGAAGACCG
GCTTCCAGGACTGATCCTGATCC-GGCCCGCCTACGGCGATCCATCGTCCGTGCCCTTACGATTAATTTGATGAGTTTTT
CT--TTTCTTCTACGAGTAGTTTGTGATCGGTGACGAGAATGAGATGCAGCGGATG----GTAGTAGAGATTGGTTAAGC
CTCTGGTTTTGGCAGTTTTCCCCGGAGAGGCCGGCTGGCTCGATGTACTACCACTAAAACAACCAGCGAATCGATTGCTC
CTTAACAAAGATGATGAGTACGAGTTGTACCAGCAATGTCCATGTGCCGTCCACTGATTTCTTGCTGGTTAACCACTGAT
CTATAATGATCTGCCATCACCAGCACTAGTACTAGTACTAGTACTAAAATGATCTGCCACCTGCAGAGAAAACTGGTTGG
TGCAGATAGGCGTAGTAG---TACTGTTTGTAAAGATTCCAGAGAAATTAGTTGTAGGTAGAGTGAGCTGTTGGGATTAT
TGGCAGAGCGGAC--TCGATTTAAAAAGGGAGCCTAGTCTATCGGGGGAGTTGGGGGCAGATTTGGACGTGCCGAGAATA
AAATTTGTAAACAAATCGCATGCGAAATGGATAGGGAAGAGAGAGA----------------------------GAGATG
GAGAAAGTGGGAGGGGCCCTGATTGGACGATGGGGGCGAAATGTCGACACTTCGCATTAACTAGTTAGTTCGCTCGCATA
CTTAACTGCAAAGTACTCCCTCCTTTCCGGTTTATAGGGCTTATCTTAAAATCCTAGTTTTTTTTATTTTATAAGACTTA
ATTTGGTTGTTCTTCTTCACAAGTTCAGATTTCAAGGTGCACTAAGTAATTGCATGCAAGTATTAAAAAGAAAATTGATC
AATGCATGTACTTTATGCATGCATGCATTGCAATTAATACATTGGTAAACATAATTTTTTAAGAAAAACAAAAGCATTAA
TTAAATGCTTTTGCAAATTACAAAAAGTATTCCACCACTCATCATCTACCTTGATTGGTGAGATTTTTGAATTGAGCCCT
ATAAACCGAAAAGGAGGGAGTACTAGCATTGCCTCCAAAAAGAAGGACTAAAAATAGCGACCCGAGTAGTATAGCAGGAA
TATGAACAAACACCTCACGTTTAGCCTTGCAAGGGCAACCGATGGTTT---AGATCACGACTGATGAAGACTCCAAAGAA
AGCTACCGGTAAAAAAACACCGCGTACACAAG-TCTC-------------------------------------------
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-------------------------------------------------------------------------GTATAGA
ATTTCAGCTGTGTTTGTATGACTTTGGACCTCATGCAGCATGTATCACTTCGGAACTCATGCTGGCTCACATTTCTTCTA
ATTGACCGCCCTTTTTTT----------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S------SS------S-------------
----------------S------------SS-------------------------------------S---S-------
----------------S---------------------------------------------------------------
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-------------S------------------------------------------------------------------
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------------------------------------------S------------------------SS--------S--
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------------------------------------S-------------------------------------------
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----------S---------------------------------------------------------------------
--------------S-----------------------------------------------------------------
---------------S--S--------------------S--------------------------S-------------
--------------------S-----------------------------------------------------------
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---S----------------------------------------------------------------------------
-----------------------------S--S---------S-------------------------------------
--SS-------------------------------------------SSSS-S-S-SSSS--------------------
-------------------------------S--------------------S--S------------------------
-----------------------------------S-----------S-S------------------------------
-------------------------------S--S---------------------------------------------
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---------S--SSS-----------------------------------------------------------------
----------------------------------------------------S---SSSSSSSSSSSSSSSS--------
------------------------------------S-------------------------------------------
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-----------------------------------------------S---------------------S-S--------
------------------------S---------------S-------SSS-------SS-----------SS-------
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--------------------------------------------------S-----------------------------
------------------SSSSSSSSSSSSSSSS
>forward_227
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-----------------------------------------------GTGGATCTGTCGGCTCTCAG-------------
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>reverse_3792
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-------------------------------TGGCTGGCTCGATGTACTAC-----------------------------
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