>input_sequence_76617
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGATCAAGGCGCCCACCTCCTCGCCCTT
GGCCGCGGCCGCCGCCGTGCTCGTCGTCGTGTCGGCGTGGGGCGCGGACGCGACGATCGAGACCACGTGCAGGGACGCAG
GGGCGGGCGACCGGCGCGTGGACGTCGCGTTCTGCGTGCGCCAGTTCTTGGCGTACGAGGGCGCGGCGGAGGCGGATACG
TGGGGCCTGGCAAAGACGGCCGTGCTCATCGGCATCAACCTCGCCGACGACGCCATCTTCGACCTCACCCACGGGAAGAT
CCTCCCAGAGCCCAAGGACAAGAAGGCCGAGGCGGCCATGGACGCGTGCGTGAAGGCGTACGACAAGGTGGGCCTGGCCT
TCGCGGAGGCTTCCGACGAGCTCAGGGCGCGCCGGTACCCGGCGGCCAAGGAGGAGATGGCGAGCGTCGCGCCGCTCCTG
CAGCGGTGCGACGGCGGGCTCGTCAAGGTCGGGCTCCCGTCGCCGCTGCCCAGGTACAGCGCCGACTGCCTGCAGACGAC
CATCATTGGCATCGCCATAACCAACCTCGTCAAGTGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G103300
GTAAAGGCGTTGAAGCTTTTTTG-AAAAGGAGGCTTGTGTTCAACTTGGTCCTGCAAAATAAATAGACATAAATGTTTCG
GGG-CATCTATTCATCAGGTGGCTAAAAGAATTTAAGTTCCAGTCAATTGTGTTTTTACCATTACATCATCATCCAAGGG
TCATCCCTCGCGGTGCAGTGTTCTGCTTCCTCCCCGCGACATACGTTTGGACAACCCTAGACTTACGTAAGGAAGGTACT
TACGTTTACGTAATAGTCATCGTGAAAGATTAGGATTGGTTTTTAGGGGAGGCTGAGGCCCACCTCCATAAAAATCAGGA
CGAATGTTTAGATAAGTTTGACATGTTTCATAAATTTACGTAGGCTTTTCGTAGGTTTATCACATGCGTTTTGTTTCTCC
ACACGCTATCGATCCCCGCGTGCCTAACCGCAACCCATTGTCGTGACA--------CATCGCCCAGGGCGTCCCTCTAAC
CTTCCCACCTCATGTTCTTCTGCCGCGCCGGCAGCCCCCTTCCCCCGCGCACCCGAACTTGTCAACCCTCGGACTCTCCT
GTCCGAGGCCTTGCCGGCGTTCCAGTGCCTTGCTTCGCTCGCCGCAGCGTCGATGTCTTCGCCTCCGTGCTTCATATAAA
TCGATTGCGCGTAAGAAATTTTGAGGTGCCTGGTGTTTAGCAAAACCGAAATGTTTTCACTTGTTGTGTGAAATCATTCC
AAGGAAAAGACTAATGCTATTTTGTTGTGTTCTTGCAGCCAAGTTT-TTTTTAGGGAGCACAGTCGAGTTGAATCATTAC
ACGGCTAATGCCAAGCCCAAATCTCAGTCAGCTGCGGGGGGTAACTAAACCGGACACTTGTTTGCCTCTCCCTGTTCCAT
GCAAACTGACCCACACATCTCCACTCTATACGTCTCTCTTGAAAAGTTCTCCCCTATATAAAACCCACATGCGCTTCGCT
TCCGATTTTCACACTGGTAAGGATTTCGGAGCAGATCTTCCAAGAGTACAGATGATCAAGGCGCCCACCTCCTCGCCCTT
GGCCGCGGCCGCCGCCGTGCTCGTCGTCGTGTCGGCGTGGGGCGCGGACGCGACGATCGAGACCACGTGCAGGGACGCAG
GGGCGGGCGACCGGCGCGTGGACGTCGCGTTCTGCGTGCGCCAGTTCTTGGCGTACGAGGGCGCGGCGGAGGCGGATACG
TGGGGCCTGGCAAAGACGGCCGTGCTCATCGGCATCAACCTCGCCGACGACGCCATCTTCGACCTCACCCACGGGAAGAT
CCTCCCAGAGCCCAAGGACAAGAAGGCCGAGGCGGCCATGGACGCGTGCGTGAAGGCGTACGACAAGGTGGGCCTGGCCT
TCGCGGAGGCTTCCGACGAGCTCAGGGCGCGCCGGTACCCGGCGGCCAAGGAGGAGATGGCGAGCGTCGCGCCGCTCCTG
CAGCGGTGCGACGGCGGGCTCGTCAAGGTCGGGCTCCCGTCGCCGCTGCCCAGGTACAGCGCCGACTGCCTGCAGACGAC
CATCATTGGCATCGCCATAACCAACCTCGTCAAGTGATGCACGCATGCGTCGAACACATGTGGTTCTTCTTCGCGTGTGA
TAAAGCTCCAATAGTGTATAGTG------------------------TCCTAGTCTGTCTTTTTTATAGAAATCTAATAA
AAAGGGGCAATTCGTATGCTTGGTTAAATTTAGAGCCTTAGACTGTCAATTTTCTACTCTTCAAATGGTTATATAATGTC
CACCCGCAAAAAAAATGGTTATATATTGTTCTAAAAAATTGGTTATATATCCGTATTAAACC---TTTTTTAGAAATTAT
CTTAAACTGCACTTTTTT-ATAATCAATACCTTGATATATTTATAGTACCAAATTTACAACATGCATGAGCTGATTGCGG
CGATTACAAAAGAAAGTCTAAAAGAAAAAAGCATATCTTTGAGATCTTCAGGCTCTTTCTTCTTTCATGACACAATCTTG
TATTTTTTTAAGGCAGCCATAGAAAAATAACAAAGATATTAAACCGTGGAGCTGTAAATACTTATAAGGGTTCTCCCATA
GCTTTAATTTGAGCCAAC-------------------------------------------------GTCGGCAAGAGTA
CCAACACTGGTATTTCAGGAAAAAAAA-ACACAACCAGATCGATGTCGTTGTGAGCCGAGAGTACGAATCACCATTGTCA
AGGACGTAGCAGTCGGGACAGATATTGCAAGGACAATCCTCCTCGTGGTGACCATGAGAAAAAAAATA-TCCAAAATCGA
TCTGGTGAAGAAAGATCTGAAGGATCATACGTAGACAAATTTAATCTTCCAACACCACCATTAACTTGCGGAAGGAGATC
TCGTCATGAAACGAAGGGACGAAGATTACTTATTATAGATGATGCCATCTTCAAAGAAGATGAAGACGACTACCATCATC
CTAAACCAATCTAATGAAAACGCTACTATTATTAAGAAATTCACTCATAAATCGGGTTCCCTCCCA----CTCCAGCATC
AGCGAGGCCCGCCGAAGAAAGGGGAACTGATCTTCTTCCCTGATGAAGGTTGCCGTGTTCATCATGCAAGCCACCCTTGC
>chr1B_1
GTAAAGGTGTTTAAACTTTTTTAAAAAAGGAGGCTTATGTTCAACTTGGTCCTGGAAAATAAATAGACGTAAATGTTTCG
GGGGCATCTATTCATCAGATGGCTAAAAGAATTTAAGTTCCAGTCAATTGTGTTTTTACCATTACATCGTCATCCAAGGG
TCATCCCTCGCGATGCAGTGTTTTGCTTTCTGCCCGGGACATA-------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CGTTTTGTTTCTCC
ACACGCTATCGATCCCCACGTGCCTAACCGCTGCCCATTGTTGTGCTGCGTGCTGCCATCGCCCAGGGCATCCCTCTAAC
CTTCCCACCTCATGTTCTTCTGCCGCGCCGGCAGCCTCCTTCCCCCGCGCACCCGAACTTGTCAACTCTCGGACTCTCGT
GTCTGAGGCCTTGCCGGCGTTCCATTGCCTTGCTTCG----CCGCAGCGTCGATGTCTTCGCCTCGGTGCTTCATATAAA
TAGAATGCGCTTAAGAAATTTTGAGGTGCCTGGTGTTGAGCAAAACCGAAATGTTTTTACTTGTTGTGTGAAATCATTGC
AAGGAAAAGACTAATGCTATTTTGTTGTGTTCTTGCAGCCAAGTTT-TTTTATAGGGAG-CAGTCGAGTTGAATTATTAC
ACGGCTAATTCCAAGCCCAAATCTCAGTCAGCTGCGGGTGGTCACTAAACCGGACACTTGTTTGCCTCTCCCTGTTCCAT
GCAAACTGACCCACACATCTCCACTCTATACGTCTCTCTTGAAAAGT-----------------CCACATGCGCTTCGCT
TCCGATTTTCACACTGGTAAGGATTTCGGAGCAGATCTTCGAAGAGTACAGATGATCAAGGCGCCCACCTCCTCGCCCTT
GGCCGCGGCCGCGGCCGTGCTCGTCGTCGTGTCGGCGTGGGGCGCGGACGCGACGATCGAGACCACGTGCAGGGACGCAG
GTGCGGGCGACCGGCGCGTGGACGTCGCGTTCTGCGTGCGCCAGTTCTTGGCGTACCAGGGCGCCGCGGAGGCGGATACC
TGGGGCCTGGCAAGGACGGCCGTGCTCATCGGCATCAACCTCGCCGACGACGCCATCTTCGACCTCACCCACGGGAAGAT
CCTCCCGGAGCCCAAGGACAAGAAGGCCGAGGCGGCCATGGACGCGTGCGTGAAGGCGTACGACAAGGTAGGCCTGGCCT
TCGCGGAGGCTTCCGACGAGCTCAGGGCGCGCCGGTACGCGGCGGCCAAGGAGGAGATGGCGAGCGTGGCGCCGCTCCTG
CAGCGGTGCGACGGCGGGCTTGTCAAGGTCGGGCTCCCGTCGCCGCTGCCCAGGTACAGCGCCGACTGCCTGCAGACGAC
CATCATTGGCATCGCCATAACCAACCTCGTCAAGTGATGCATGCATGCGTCGAACACCTGTGGTTCTTCTTCGCGTGTGA
TAAAGCTTCAATAGTGTATAGTCTAGAACCCTTTCTCTATTCTCCTCTCCTAGCCTGTCTTTTTTATAGAAATCTAATAA
AAAGGGGCAATTCGTGTGCTTGGTTAATTT-AGAGCCTTAGCCTGTCAATTTTCCACTCTTCAAATGGTTA---------
---------------------TATATTGTTCCAAAAAATTGGTTATATATCCATATTAAACAGTTTTTTTACCAAATCAT
CCTAAACTGCATTTTTTTAATAATCAATACTTTGATATATTTATAGTAGCGAATTTACAACATACATGAGCTGATCGCAG
CGATTACAAAAT-AAATCTAAAAGAAAAGAGCAAATCTTTGAGATCTTCACATTCTTTCTTCTTTCATGACACAATCTTG
TATTTTCTGAAGGCAGATGTAGAAAAATAACAAAGATATTAAACCACGGACCTATAAATACTAATGAGGGTTCTCTCATA
GCTTTAGTTTGAGCCGCAATGCCAAGGCTACAATGCACGCACGCAGCTATTAAAATAATCAACCAATGTCGGCAAGAGTA
CCAACACTGGTATTTTAGGAACAAAAAAACACAGCCAGGTCGATGTCGCTGGGAGCCAAGAGTACGAATCATCATTGTCG
AGGACGTAGCAGTCGGGACAAATATTGCAAGGACCATCCTCCTTGTGGTGACCATGAGAAAAAAAATAATCCAAAATCAA
TCTCGTGAAGCAAGATCTGAAGGACCATACCTAGACAAATTTAATGTTCCAACACCATCGTTGACTTAGGGAAGGAGATC
TCGTCGTGGAAGGAAGGGACGAAGATTACTTATTATAGACGATGCCATCTTCAAAAAAGATGAAGACGACTACCAACATC
CTAAACCAATTTAATAAAAACACTGCTATTATTAAGAACTCCACTCATAAATCGGGTTCCCTGCTACCACCTCCGACGCC
AGCGAGGCCGACCGAAGAAGGGGGAACCAATCTTCTTCCCTGATGAAGGTTCTCATGTTCAT-ATGCGAGCCATCCTTGC
>chr1D_447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CATCGCTCAGGGCATCCCTCTAAC
CTTCCCACCTC------TTCTGCCGCGCCGGCAGCCCCCTTCCCCACA-CACCCGAACTTGTCAACTCTCGGACTCTACT
GTCCGAGGCCTTGCCGGCATTCCATTGCCTTGCTTCGCTCGCCGCAGCGTCGATGTCTTCGCCTCGGTGCTTCCTAGAAA
TCTATTGCGCGTAAGAAATTTTGAGGTGCCTGGTGTTTAGCAAAACCGAAATGTTTTCACTTGTTGTGTGAAATCATTCC
AAGGAAATGACCAATGCTATTTTGTTGTGTTCTTGCAGCCAAGTTTCTTTTATAGGGAG-CAGTCGAGTTGAATTATTAC
ACGGCTAATGCCAAGGCCAAATCTCAGTCAGCTGCGGGGGGTAACTAAACCGGACACTTGTTTGCCTCTCCCTGTTCCAT
GCAAACTGACCCACACATCTCCACTCTATACGTCTCTCTTGAAAAGTTCTCCCCTATATAAAACCCACATGCGCTTCGCT
TCCGATTTTCACACTGGTAAGGATTTCGGAGTGGATCTTCGAAGAGTACAGATGATCAAGCCGCTCACCTCCTCGCCCTT
GGCCGCGGCCGCGGCCGTGCTCGTCGTCGTGTCGGCGTGGGGCGCGGACGCGACGATCGAGACCACGTGCAGGGACGCAG
GGGCGGGCGACCGGCGCGTGGACGTCGCGTTCTGCGTGCGCCAGTTCTTGGCGTACGAGGGCGCGGCGGAGGCGGATACG
TGGGGCCTGGCAAAGACGGCCGTGCTCATCGGCATCAACCTCGCCGACGACGCCATCTTCGACCTCACCCACGGGAAGAT
CCTCCCAGAGCCCAAGGACAAGAAGGCCGAGGCGGCCATGGACGCGTGCGTGAAGGCGTACGACAAGGTGGGCCTGGCCT
TCGCGGAGGCCTCCGACGAGCTCAGAGCGCGCCGGTACGCGGCGGCCAAGGAGGAGATGGCGAGCGTCGCGCCGCTCCTG
CAGCGGTGCGACGGCGGGCTCGTCAAGGTCGGGCTCCCGTCGCCGCTGCCCAGGTACAGCGCCGACTGCCTGCAGACGAC
CATCATTGGCATCGCCATAACAAACCTCGTCAAGTGATGCATGCATGCGTCGAACACCTGTGG---TTCTTCGCGTGTGA
GAAGGCTCCAGTGCTGTATAGT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>SNPs
-------S---S--S-------S-------------S-----------------S-------------S-----------
------------------S-------------------------------------------------S-----------
------------S---------S-----S--S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
-----------------S-------------SS--------S---SSS---------------------S----------
------------------------------------------------------------------S-------------
------------------------S----------------------------------------S--------------
--------------------------------------------------------------------------------
---------------------------------------------------SSS--SSSS--------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S---------------S----------------------
----------------------S------------------------------S--------------------------
---------------S-----------S--S----------S------------S----------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----------S--------------------S--------S--------SSS----S--
-S---------S------------------S-----------------S-S------------S-----------S--S-
-----------SS--S------------S----S----------------SSS---------------------------
------S-S-------SSS--------------------------SS---S--S--------S--S---------S----
------S--------SSS--------------------------------------------------------------
---------------S-----S-----------S----S---------S--S-----S-------------S-------S
--------------------S-------------S--------S----------------------------------S-
---S------S-------------S-----S--------------S-----------S-S--S----SS-----------
-----S--S--S---------------------------S---------------S-------------------S----
----------S----S-----S--S-------------S-S---------------------S-S---------SS-SS-
---------SS--------S-------SS----------------------SS-S-------S----S-----S------
>forward_299
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTTTTAGGGGAGGCTGAGGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>reverse_2098
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CGTCGGCAAGAGTACCAACA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
