>input_sequence_76596
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-----------------------------------------------------------------ATGGCGTTTACCATG
AGGAACACAGGCGTGGTATGCTTGGCCGCCCTCATGGTGGTGATGGCCACTGTGATGCTGTCCGGTGATGCCGAATCAGG
TTAGTGCAACACGTTTC---------------------------------------------------------------
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--------------------------------ACATACATATATATGTGACCGACA-------TGATTTCCTTCTCATCT
A----CTGCCTCTGTAAAACTCTCCACACAAGCCTTTTAAAACGTCTTATATTTATTTACAGATGTACTAATATT-----
--------------------------------------------------------TTATATGTGATCTATGAATCCAAC
AAGATATTGATTGTACCAAT------CTACCAGTTAACCCATTGTATGCATGTACCAGCAAGATATTGCTTGTA---CCA
ATCTACCAATTGACCCATTGTATATAATCCATACCTTTTGCTAACTA-TTTTTTTTCGTGTGTAGATATCTGCTTTGATA
TTCCCGGACCATGCGTGCAGTCGTTATGCAAGGATGCATGTGCTAAAAATAATACCCCAAATAGACCCCACTGCCAGCCC
GTGACTGATGAATGCTGTTGTGACATGGCCGCAAGGCCCGAGGTCGACGACGTCGTC---CATCATGCTTGA--------
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>chr1D_1_TraesCS1D01G011500
CCCTTTTTCTACTAGTGTAGTCATCTTCTAGCTCCGAATTAGGGTTATCAAAGTATAAAATATCGTTTAAGAGAGCTTTT
CTCCTTGTACCTCCATCTTGAGGATCAAGACCTCCTAAAGGAGAAGGATCCCCATCGTAAG----ATTATCAAGACCTCC
CTAGGGAGAATGATCTATCTAGATCACC-AAGACCTCATCTCCTTTGAATTTGGGAAGAATCTTACCTTGTGCTATTTTC
CCTTTGTTTTTCATGTACCTTGTGGATCTTGTGTAGATGTGAGTTGAGTGAATGTGTGATTGGACTTGTTCTTGATTGTT
ACTCTTGTGATTTCTCCACGTTCTTTCCCGTGTTCTTTACGGATCCCCCCTTCGATTCATGAAAGATTACTATCAAGGGC
TTGGTCCTATATCACAATGCATATAGAGGAGAGGA---GACGTGCGGTGATTAGGGCAACTCCATAAGGAAAAGAAGAAG
AAAAACGATGATCCAACACACGGATGCAAACTAAAAAAATGTCTGTCACGTGTTTGTGTTGATGCA---TGTCCGTCCTA
AATTTCAGCCTGATTTGCATCTACATGAACAAGAGATAGACACGCCGTGCATCCGCTTGATGTCCGGCGCTCGGACTCAA
GCGTCAGCCCCCCAACAACCTCCCACAGGTGCTACTTAATTCACGCAT--------------------------------
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------------------------------------------GCAGGAGGTCCCGAAATCCTCTTGCTACCGTTTAAATA
AAGCAAATCAATTCCAGCTAGTAGTAAAAACAAGATTAGCGA-GGGGATCGGTACCTATACGTCTAATTTTAGATATGCA
TTGATT-----------AATACATTAATCCAAGGCTAAAATTAGGACGACAATTAATTATGACCATAAACGCATGGAGGA
CCAACCTTTGCGTGTGCGCCTCCACCCTCTATTTAAA----CACTAGCGAAAGGAGCTGTGCATCAGCGCATCGCCAAGA
AGAT-ATCAA---ACATACAGTGTAGAAAAGAGATAAGTAGCTAGCTAGCTTTGCATATCTTGGCATGGCGTTTACCATG
AGGAACACAGGCGTGGTATGCTTGGCCGCCCTCATGGTGGTGATGGCCACTGTGATGCTGTCCGGTGATGCCGAATCAGG
TTAGTGCAACACGTTTC---------------------------------------------------------------
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--------------------------------ACATACATATATATGTGACCGACA-------TGATTTCCTTCTCATCT
A----CTGCCTCTGTAAAACTCTCCACACAAGCCTTTTAAAACGTCTTATATTTATTTACAGATGTACTAATATT-----
--------------------------------------------------------TTATATGTGATCTATGAATCCAAC
AAGATATTGATTGTACCAAT------CTACCAGTTAACCCATTGTATGCATGTACCAGCAAGATATTGCTTGTA---CCA
ATCTACCAATTGACCCATTGTATATAATCCATACCTTTTGCTAACTA-TTTTTTTTCGTGTGTAGATATCTGCTTTGATA
TTCCCGGACCATGCGTGCAGTCGTTATGCAAGGATGCATGTGCTAAAAATAATACCCCAAATAGACCCCACTGCCAGCCC
GTGACTGATGAATGCTGTTGTGACATGGCCGCAAGGCCCGAGGTCGACGACGTCGTC---CATCATGCTTGATAACATAA
CCTTGAATCATTATTGGACAAACATTGTCA--GTGATCAGGATATGTATATGCATGCATGCATGCGTGCGTGTCAGCAAT
TGCATTTTGAATAACAAAAAACACAAA-----------------------------AGAGTAAATCATTATTCTGAGTTT
GAGATTTGTCATGTTGCAATGCACTTGTACATCTCTCTCTCCCCGTAC-GCATCGCAGGTCTCTCGTCTTCCCCAATATG
TATGCTCTCATCCTTGCCACACCCTCCCCTACCCTCTCACCATCGTCTCTTCTGGCACCGGTTCGTGCACCCGACCGATC
CAGAGTCTCCAAGCTAGCCATACCGTAT-------------------ATGATCACGCATGCTTGCACCGAATTCTCTACT
TATTATCAGAGTACGTGAGCGTTTCCTCGAAAGTGTGGCGTGGTGAAAGGTGACGGTGCCATGCAAGTGAGGCCATCTTT
TTTGTTTGTTATTTTTTGCAATCTGAACCATGGTTGTGGAGACGAGTGGACAGCGAGATGAGCGTGT----GAAATTCCA
AAAGAAAGAAAACGAATCAATTTTCGTTCTGAGAAGCAAGGAGGCGATAATTATCCATTAATTAATGCATTAATTCCATC
CTAAAATTAGGCAGGTAGTTAATCATCTCCATAAACGTACGCCATAAACGCAGGCAGGCTGGATCGACCTGCGTGATCAC
ATCTCCCCCTATATATAACGAGCTATGTCAACACATCGCCCCAATATCAAACCACAATGAATACTAGAAGAGATCTTAGA
TCGGCCATGATGCTGTCCTGTCATGCCTACAGTCGGTGAACATATAAGCGATCAAGTAATTAATCCATTATATGTACATC
TACTGTGCTCTAGTTCATTTTTGTTCCATTCTGTGTAGCTTTTTGCATGATTGACGATGGTTACGGGAAACACCGCACCT
TTTGA--ATGACTGATGGCAGAAGTTGTTGTGATTTTGACCCCAAGTCCATGCCCAAGGTCGACGCTGTCGGTCCCGATT
GATACATCG
>chr1A_50
AAAGTATAA-----------------------------------------------AAAATATCATTTAAGAGAGCTTTT
CACCTTGTACCTTCATCTTGAGGATCAAGACCTCCTAAAGGAGGAGGATCCCCATCATAGGATTAATTATCAAGACCACC
CTAGGGAGAAGGATCTATCTAGATCACCAAAGACCTCATCTCCTTTGGATTTGGGAAGAACCTTACCTTGTGATATTTTC
CCTTTGTTGTACATGTACCTTGTGGACCTTGCGTAGATGTGAGTCTAGTGGATGTGTGATTGGACTTGTTCTTGAGTGTT
CCTCTTGTGATTTCTCCATGTTCTTCCGCGTGTTCTTCATGGATTCCCCCTTCAATCCATGAAAGATCACTAGCAACGGC
TTGC-CCTATATCACAATGCATATAGAGGAGAGGATACGACGAGCAGTGATTAGGGCAACTCCATAAGGAAAA-------
AAAAACGACGGTCCAACACACGTATGCAAACGTAAAAAATGTTCGTCATGTGTTTATGTCCATGCATATTGTCTGTCCTA
AATTTTAGCCTGATTTGCATCCACATGAACAAGAGATGGACACACCGTGTGTCCCCTCAATGTCTGACACTCGAACTCGA
GCATCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGAGGTCCA-AAATCCTCTTGCTAGCATTTAAATA
AAGCAAATCAATTCCAGCT--------AAAAAAGATTAGCGA-GGGAATTGGTACGTATACGTCTAATTTTAGATATGCA
TTGATCGATCAATTATCAATACATTAATCCCAGCCTAAAATTAGGAC---------------------------------
---------GCGTGTGCGCCTCCACCCTCTATTTAAA----CACTAGCGAAAGGAGCTGTGCATCAGCGCATCGCCAAGA
AAGAGATCAA---ACATACAGTGTAGAAAAGAGATAAGTAGCTAGCTAGCTTTGC--ATTTTGGCATGGCGTTTACCAGG
AGGAACACAGGCGCCGTATGCTTGGCCGCCCTCATGGTGGTGATGGCCACCATGATGCTGTCCTGTGATGCAGGT-----
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-------------------------TATAATTACATACATATATATGTTACCCACA-------TGTTTTCCTTCTCATCT
A----CTACCTCTGTAAAACACTTGATAAAACTC-TTTATAACGTCTTATATTTATAGTGTAGTGTCAAAAGTGCTTTTA
TATTATGGGATGAAGGGAGTAGTATTTTATATGTGATCTATTTCTTTTGTGGGGGATTATATGTGATCTATGAATCGAAC
AAAATATTGTTTGTACCAATCTACTCCTACCAATTAATCCATTGTATGCATGTACCAGCAAGATATTGGTTGTA---CCA
ATCAACCAACTGATCCGTTGTATCTA-TCCATACCTTGTGCTAACTATTTTTCTCTCTCGTGTAGATTTCTGCTTT--TA
TTCCCGGGCCATGCGTGCAGTCGTTATGCAAGGATGAATGTGCTAGACAAAATTACCCCAATAGACCCCACTGCCAGCCC
GTGACCGATGAATGCTGTTGTGACACTTCCGCAAGGCCCGAGGTCGACCACGCCATC---CGTCAAGCTTGATAACATAA
CCTTGATTCATTATTGGACAACCATTGTCGAGGTGACCAGGATATACAT------------ATGCATGCATGTCAGCAAT
TGCATGTCGAATAACAAAAAACACAAAGTGATGTAGAAAAAAACTAGAAAACACAAAGAGTAAATCATTACTCTGAGTTT
GAGATTCGTGCTGTCGCAATGTACTTGTACATGTCTCTCTCTCCCCTAAGCACCGCAGGTCTCCCGTCTTCCCCGATACG
TATGCTCTCATCCTCGTCACACCCTCTCCTACCCTCTCACCATCGTCCCTTCTGGCACCGGTTCGTGCACCCGACCGATC
TAGAGTCTCCATGCTAGCCAT-----------------------------------------------------------
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>chr1B_667
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-------------------------------------AATTCACGCAT--------------------------------
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------------------------------------------GGAGGAGGTCCCCAAATCCTCTTGCTACCGTTTAAAGA
AAGCAAATCAATTCCAGCTAGTAA-AAGAAAAAGATAAGCGACGGGGATGGGTACGTATACGTCTAATTTTAGACACGCA
TTGATT-----------AATACATTAATCCAATGCTAAAATTAGGAC---------TTATGACTATAAACTCATGGAGGA
CCAATCTTCCCCTGTGCGCCTCCACCCTCTATTTAAAGGAACACTAGCGAAAGGAGCTGTGCATCAGCGCATAGCCAAGA
AGAGATCAAACATACATACAGTGTAGAAAAGAGATAAGTA------------------TCTTGGCATGGCGTTTACCAAG
AGGAACACAGGCGTGGTGTGCTTGGCCGCCCTCATGGTGGTGATGGCCACTGTGATGCTGTTCTGTGATGCCGAATCAGG
TTAGTGCAACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
ATATATATATATATATATATATATATATATATATATATATATATATATTATCTGACCGACATGTGATTTTCTTCTCATCA
TATATCTGCCTCTGTAAAACTCTGGACGCAAGCCTTTTAAAATGTCTTATATTTATTTACAGATGTACTAATATT-----
--------------------------------------------------------TTATATGTGATCTATGAATCCAAC
AAGATATTGTTTGTA-------------------------------TGCAAGTACCAGCAAGCTATTGGTTGTAGTACCA
ATCTACAAACTGATCCGTTGTATATAATCCATACCTTTTGCTAACTATTTTTTTTTCGTGTGTAGATATCTGCTTTGATA
TCCCCGGACCATGCGTGCAGTCGTTATGCAAGGAAGCATGTGCCAAAAACAATACCCCAAATAGACCCCGCTGCCAGCCC
GTGACTGATGAATGCTGTTGCGACATGGCCGCACGGCCCGAGGTCGCCGACGACGTCGTCCGTCATGCTTGATAGCATAG
CCTTGATTCATTATTGGACACACATTGT-GGGGTGATCAGGACATGTATGTAT----ATGCATGCGTGCGTCTCAGCAAT
TGCATTTTGAATAACAAGAAAACACA----------------------------AAAGAGTGCATCATTGTTCTGAGTTT
GAGATTCGTCATGTCGCAATGTACTTGTACATATCTCTCTCCCGGCAC-GCACCGCAGGTCTCTCGTCTTCCCCAATACG
TATGCTCTCGTCCTTGCCACTCCCTCCCCTACCCTCTCGCCATCGTCTCTTCTGGCACCGGTTCATGCACCCGACCGATC
CAGAGTCTCCATGGACAATAGCGCGTATCCGCAGGGCTACGTCGTCCATGATCACGCATACTTGCACTGAATTCACTATT
TATTATCAAAGTACGTAAGCTTTTCCTCCAAAGTGTGGCATGGTGAAAGTTGACGGTGCCATGCAAGTGAGGCCATCTTT
TT-GTTTGTTAGTTTTTGCAATCTGAACCATGGTTGTGGAGATGAGTGGACAGCGAGATGAGCGTGTATATGAAATTCCA
AAAGATAGAAAACGGATCAATTTTCATTCTAAGAAGCAAGGAGGCGATAATTAACCATTAATTAATGCATTAATTCCATC
CTAAAATTAGGCAGGTAGTTAATCCTCTCCGTAA----ACGCCATAAACGGAGGCAGGCTGGATCGATCTGCGTGATTAC
ATCTCCCCCTCTATATAACGAGCTATGTCAACACGTCGCCCCAATATCAAACCACAAAGAATACTAGAAAAGATCTTAGA
TCGGCCATGATGCTGTCCTGCCATGCCTACAGTCGGTGAACATATAAGCGATCAAGTAATTAATCCATTATATGTACTAG
C----------------TTTTTGTTCCATTCTGTGTACTAGCTTTTTGCGTTGACACTATT----GGGAACACCGCATCT
TTTTTGCATGACTGATGACAGATGTTGTTGTGATTTTGATCCCAAGTCCATGCCCAAGGTCGACGTTGTCGGTCACGATT
GATACATCG
>SNPs
SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------
-S----------S------------------------------S------------S--S-----------------S--
----------S------------------------------------S------------S-----------S-------
--------S-S---------------S----S------------SS----S------------------------S----
S-----------------S------S-S---------S-S----S--------S--S----------S----S---S---
---SS-------------------------------------S--S---------------------------SSSSSSS
--------S-S-----------S--------SS---------SS----S------S---SS------------S------
-----S---------------S---------------S-----S-----SS---S--SS-----S-S-S----S----S-
--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
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------------------------------------------------------S-------------------------
-----------------------SS-----S------------------S-----S------------------------
-----------------------------------------------SSSSSSSSS-------S------S---------
----S---S-----------------------------------------------------------------------
---S---------------------------------------------------SS---------------------S-
---------------------------------------------------------------S----------------
-------------SSSS---------------------------------------------------------------
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------------------------------------------------S---S---------------------------
-----------------------SS-------------------------------------------------------
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---------S----------------------S----S------------------------------S-----------
---------S---S--S---------------------------------------------------------------
-------------------------------------------------S------------------------------
----------------------------------------------------S--------S------------------
------S----------------------S-------------------S-SSSSSS-----------------------
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------S-------S------S----------S------------S------S-------------------------S-
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-----------S---------SS------------------------------------S-------S------S---S-
--------S-------S---S-------S----------S---------S------------------------------
--S--------S------------------------------S-------------------------------------
-----S--------S----------S----S----------------------S--------------------------
------------------------S-----S---SSSS------------S----------------S---------S--
----------S-----------------------S----------------------S-----------S----------
--------------------S--------------------------------------------------------SSS
SSSSSSSSSSSSSSSSS--------------------SSSSS--SSSSSS-----SS-SS-SSSS--S---------S--
---SS------------S----S----------------S-------------------------S--------S-----
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>forward_610
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------------------------------AAGAGATAGACACGCCGTGC------------------------------
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>reverse_2581
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--------------------GTTTCCTCGAAAGTGTGGCG----------------------------------------
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