>input_sequence_76585
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-----------------------------------------------------ACTAGTAGGAACGATCTCACGCGCA--
--ACACAAGAGAGAGCGAATAGAACCGACATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCC---A
AGGGCTCAGGCACTGCCGCCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACACCGTCGTGGCTGCCAGGACC
ATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGCG-CAGGAG
GAGCGGGCGCAGCCGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGGC
GGGGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACCGGTCCGCTCGGCGGCGTCGGGGG
CGGCGTGGGGAGCGTCGGCCCGGTCGGTGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGCG
CCCCGTTCGGCGGGATCCG---------------------------AGGCGGCTACGGCGGCGGAGGCGCCGGCGGCGCC
ACGCCTTGA-----------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G460000
CACTCTACTCATTCTCCTGCCACATAGCCAAATCTGTGAGAGAATGATTGGGTGTTGAGGTGACTATCTTTTGAAACACA
AAAATAAGGAGTTCATCAGCAACAACAACATCTATTACCTTTGTGAGAGTGGTGTCTTCCAGATTGGTTAGGTGTCACTT
GGGAGCCTCCAAGATGTGGAGTTGAACCAAGGAGTTTGTAAAGGTAAAGAGATCGCCTACTTCGTGAAGATTTACCTGAG
TGAGGCTAGTCCTTCATGGGCGTAAGCCATGGTGACATAGATAAGGTTGCATTTGATCTTCCAAACCCCCTCCTTTATGT
TCATATGCAAAGTCTTTACTTTCTGCTGCCTACTAACTTAGACTTGCATGTATAG-----GACAAGACTTGTTAGAATTG
CCAAAACTTGCCTAGAACTAAAATTGGGAAAAGGTCAAGTTTTTATTTGCCAAGTAGTCTAATCCCCCACCCCCCCTCCC
CCCCTACTAGACCAACTTGCAATCCTACAAAGTGACGCCGCGCTCTACTCCGGCCGCATCACTCTGAAGCGGTGGTCACC
TGCATGAATGCACGGTAACCGCTTCTCGTGGAGAGGGTTTTTCGGACAGAAGGGTTTTTGGGTGGGACCGTGGTGTCGGG
CGAGGGCGTGTATGTATCTGCAATCCGGTCGTTGTGTCCGGTTTGTGGAAAAACGGGCAACCAGATCGGTCCACAGATCA
ATAGGATACTGCATTGGATGGTAAATTTCATCTAAAGACCGATGAGATACCGCGTTGAATGATAAATTACATCCTAACTA
CCCGATCTAGATGATTGCAGACAGTTTAAGGGTCAGAAGATGCACTTAATGGTCACCATGAACAAACAT---CTGCACCC
CACGCCATTCTCGCACTGGCCTCATTTACAGCCTCCCCATCTGCCCCGCTCGACTCTCCATCGCACCATACGTA---CTC
CCCTCCTCCTCCTCGGCCTATTTAAACCGCAAGCTTCACCACAC--CAAATGCACTAGTAGGAACGATCTCACGCGCA--
--ACACAAGAGAGAGCGAATAGAACCGACATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCC---A
AGGGCTCAGGCACTGCCGCCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACACCGTCGTGGCTGCCAGGACC
ATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGCG-CAGGAG
GAGCGGGCGCAGCCGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGGC
GGGGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACCGGTCCGCTCGGCGGCGTCGGGGG
CGGCGTGGGGAGCGTCGGCCCGGTCGGTGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGCG
CCCCGTTCGGCGGGATCCG---------------------------AGGCGGCTACGGCGGCGGAGGCGCCGGCGGCGCC
ACGCCTTGAGTACGTCGCAGTGGTCGAGCTAGCATGGGCGCTCTGGGCTATGCATACATGTACGTGACCAGACGCCTCGT
TGGTGCATGGTGGATCGCGCTAGCTTTGACTGTGTATTTCCTTGTACCTAGGGTGTTGCCGTATCATGGCGCAAGGTATA
TGCGCAGTACTAGTACTACTTAGTTCGCAGGTGCGTGTACGAGAAGTAGGTGATCCGATGCGAGAAGTTGGAGAGTGTGT
GTGTGTGTGTGGCCAGTCAGGGTTTGTGAGGGTTGTGTGGTTGTGTTTGGTCATTTGAACTACCTGTGTATCCGACTAGC
TAGCTGCTGCTAATGGTATGTAGTACTATGTATGATTCTCGTGGTGTTCTCAACTCTTTGTGGGTGTGCTCGCGCAGTGT
TCCAAACTCCG--GTTCATTTCGTGTGTGCGCGTCTCTTTTGTCTGCGTGGCAATATAAACATATGGAAAGACAAGGTAT
GAAGAGAACCAAAGGAAGAAAGAACTCGGGTTAATTGAAGAGACAAAACATATATGAACCAAAGCATGAAAGCGAACTGT
TCTTGTTCATGCTAACAATGCAAAGCTTGAAATTCGTCCCCATGATGAAAATTGCCCTCCTGTATGTGGACTTTATGAAC
TGAAGTCGAGTTCGGTTCAATGTATTCGTGTTGATCTCAGCATTCACATACG----------------------------
-----------------------------------------------------------------------------TTT
TTTCTTTTCTTTTGCTGGTAGCATTCCCGTTTTCTGTTCCAAGAAACAAACATTCATACGGTATTGCCGGAGTAGCATTC
ACGTTTTCTTCTGTTCCAAAAGGAAGAACATTCACGCTGCTGGCTTTGAGGACTGAGGCTC-GGGGACTGAGCTACATTA
CTCGTTGATCTACTTCCACAGTTGCACGTTATACAAAGCACTAGACGGTTCAATAACGGGCCAGCCGGAGCAAAGGATTT
ATGCCCACCAGTAAAATATTGTATGATTGATATCACAACAGGGGCTGGGATTTATCTACATGCATAGCTACGTGAAT
>chr5B_1
CACTCTACTCATTCTCCTGCCACATAGCCAAATCTGTGAGAGAATGATTGGGTGTTGAGGTGACTATCTTTTGAAACACA
AAAATAAGGAGTTCATCAGCAACAACAACATCTATTACCTTTGTGAGAGTGGTGTCTTCCAGATTGGTTAGGTGTCACTT
GGGAGCCTCCAAGATGTGGAGTTGAACCAAGGAGTTTGTAAAGGTAAAGAGATCGCCTACTTCATGAAGATTTACCTGAG
TGAGGCTAGTCCTTCATGGGCGTAAGCCATGGTGACATAGATAAGGTTGCATTTGATCTTCCAAACCCCCTCCTTTATGT
TCATATGCAAAGTCTTTACTTTCTGCTGCCTACTAACTTAGACTTGCATGTATAGAGTGTGACAAGACTTGTTAGAATTG
CCAAAACTTGCCTAGAATTAAAATTGGGAAAAGGTCAAGTTTTTACTTGCCAAGTAGTCTAATCCCCT----------CC
CCCCTACTAGACCTACTTGCGATCCTACAAAGTGACGCCGCGCTCTACTCCGGCCGCATCACTCTGAAGCGGTGGTCACC
TGCATGAATGCACGGTAACCGCTTCTCGTGGAGAGGGT-TTTCGGGCACAAGGGTTTTTGGGTGGGACCGTGGTGTCGGG
CGAGGGCGTGTATGTATCTGCAATCCGGTCGTTGTGTCCGGTTTGTGGAAAAACGGACAACCAGATCGGTCCACAGATCA
ATAGGATACTGCATTGGATGGTAAATTTCATCTAAAGACCGATGAGATACCGCGTTGAATGATAAATTACATCCTAACTA
CCCGATCCAGATGATTGCAGACAGTTTAAGGGTCAG-AGATGCACTTAATGGTCACCATGAACAAACAT---CTGCACCC
CACGCCATTCTCGCACTGGCCTCATTTACAGCCTCCCCATCTGCCCCGCTCGACTCTCCATCGCACCATACGTA---CTC
CCCTCCTCCTCCTCGGCCTATTTAAACCGCAAGCTTCACCACAC--CAAATGCACTAGTAGGAACGATCTCACGCGCA--
--ACACAAGAGAGAGCGAATAGAACCGACATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCCAAGA
AGGGCTCAGGCACTGCCGCCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACACCGTCGTGGCTGCCAGGACC
ATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGCG-CAGGAG
GAGCGGGCGCAGCCGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGGC
GGGGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACCGGTCCGCTCGGCGGCGTCGGGG-
CGGCGTGGGGAGCGTCGGCCCGGTCGGTGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGCG
CCCCGTTCGGCGGGATCGG---------------------------AGGCGGCTACGGCGGCGGAGGCGCCGGCGGCGCC
ACGCCTTGAGTACGTCGCAGTGGTCGAGCTAGCATGGGCGCTCTGGGCTATGCATACATGTACGTGACCAGACGCCTCGT
TGGTGCATGGTGGATCGCGCTAG---------TGTATTTCCTTGTACCTAGGGTGTTGCCGTATCATGGCGCAAGGTATA
CGCGCAGTACTAGTACTACTTAGTTTGCAGGTGCGTGTACGAGAAGTAGGTGATCCGATGCGAGAAGTTGGAGAGTGTGT
GTGTGTGTGTGGCCAGTCAGGGTTTGTGAGGGTTGTGTGGTTGTGTTTGGTCATTTGAACTACCTGTGTATCCGACTAGC
TAGCTGCTGCTAATGGTATGTAGTACTATGTATGATTCTCGTGGTGTTCTCAACTCTTTGTGGGTGTGCTCGCGCAGTGT
TCCAAACTCCG--GTTCATTTCGTGTGTGCGCGTCTCTTTTGTCTGCGTGGCAATATAAACATATGGAAAGACAAGGTAT
GAAGAGAACCAAAGGAAGAAAGAACTCGGGTTAATTGAAGAGACAAAACATATATGAACCAAAGCATGAAAGCAAACTGT
TCTTGTTCATGCTAACAATGCAAAGCTTGAAATTCGTCCCCATGATGAAAATTGCCCTCCTGTATGTGGACTTTATGAAC
TGAAGTCGAGTTCGGTTCAATGTATTCGGGTTGATCTCAGCATTCACATACTCCCTCCGTTCGAAATTACTTGTTACAGA
AATGGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATTTGCGAGACAAGTAATTCCGAACGGAGGGAGTACATTT
TTTCTTTTCTTTTGCTGGTAGCATTCACGTTTTCTGTTCCAAGAAACAAACATTCATACGATATTGCCGGAGTAGCATTC
ACGTTTTCTTCTGTTCCAAAAGGAAGAACATTCACGCTGCTGGCTTTGAGGACTGAGGCTCGGGGGACTGAGCTACATTA
CTCGTTGATCTACTTCCACAGTTGCACGTTATACAAAGCACTAGACGGTTCAATAACGGGCCAGCCGGAGCAAAGGATTT
ATGCCCACCGGTAAAATATTGTATGATTGATATCACAACAGGGGCTGGGATTTATCTACATGCATAGCTACGTGAAT
>chr5D_854
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----------------------------------------------------------TGAACAAACATTGACTGCAACC
CACGGTGCTCTCGCAGTGGCCTCATTTACAGCCTCCCCATCTGCCCCGGTCGACTCACC--------GTACGTACTCCCA
TCCTCCTCCTTCTCGGGCTGTTTAAACAGCAACCTACACCACACCGCAAGTGCACCAGTAGCAACGATCTCACGCGCAC-
-AACACATGATAGAGCGAGTAGAACCGATATCTGTAGCTAGCTAGC--TAG-AGAGCGGCG-------CCATGGCCAAGA
AGCGGTCGGCCACTGTCGCCTCTC---T---CCTGCTCTGCGTCGCTCTGGCGGGGCACGCCGTCACGGCGGCCAGGACC
GTGCACGCTGCAGCTGGCGGCGCGGCAGAGACATCGCTTCCGGCCGCGATAGCCGCAGAGAACGGTTCCGGTG-CAGGAG
GAGAGGGCGCAGCGGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGAGCATGCCGGCCTTGGGC
GACGGCTACGGCGGTGGCTTCGGCAACAACGGAGACGACCTCTTAACCGGCGTCACGGGCCCACTCGGCGGCGGCGGGGG
CGGTGTGGGGAGCGTCGGCTCGGACGGCGGCGTCGGGGGAGCCGGTGGTATCCCGTTTGGAGGGTTCGCCGGTTGCAGCG
CCCTGTTCGGCGGGCTCGGAGGCGGGTAAGGCGGCGGAGGCGCCGGTGGCGT---------------------------C
ACGCCTTGAGTACGCCGCGGTGGTCGAGCTAGCTAGGGCGCTCTGGACCATGCATATATGTACGTGACGAGATTCCGCGC
TGGTTCATGGTAGATCGGGCTACCTTTG----------------------------------------------------
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>chr5A_854
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----------------------------------------------------------TGACCAAACATTCACTGCACCC
CACGTTGCTCTCGCACTCGCCTCATTTACACCCTCGCCACCTGCTCCGGTCTCCC---------------CGTCCTACTC
CTCCACTTCTCCTCCACCTATTAAAACAGCTAGCTCCACTACACCGCAAGTGCACCGATAGCAACGATCTCACGCGCAC-
-AGCACAAGACAGAGCGAGTAAAACTGAAATTTGTAGTTGGCTAGC--TATAGAGAGTGGAGCCATGACCAGGAACAGGA
AGTGCTCTCGCACTGCAGCCTCCC---TTGCCCTGCTCTGCCTCGCGCTGGCGGCACACGGTGTGGCAGCTGCCAGGACC
GTGCCTGCTGCAGCTGGCGTCGCGGCGCAGGCCTCGCTTCCGGC------CGCCACAGAGAGCGGAGCCGGTG-CAGGTG
GAGTGGGCGCAGCGGACGCGAAGAACCTGTTCGTGGGCATGGGAGGCATGGGGAACCTGCCGGGCCTCCCGGCCGTCGGC
GGTGGCTACGGCGGGGGCTTCGGCAACAACGGAGCCGGCGTCTCCACCGGTATCACGGGCCCGCTCGGCGGCGTCTTGGG
TGGCGTGCGGAGTGTCAGTTTCCTGGGCAGCGTCGGGGGTGCCGGCGGTATCCCGTGCGGAGGCTTCCGCGGGGGCGGTG
CCCCGTTTGGCGGGCTCGG---------------------------AGGCGTGTACGGCGGCGGAGGCACCGGCGGTGCC
ACGCCTTGAGTACGCCGTTGTGGCCGAGCTAGCTAGGGCACTCTGGGCCATGCATACATGTACGTGACCATCCTCGGCAG
TGGTTTATGGTGGATCGCGCTAGCTTTGCCTGCGTAGCTGCGTGTAACTAGGTATTTCCAAATGAATGGCGCAACATATA
TGCGCAGTAG------TACTTAGTCTCCAGGTGTGTGTGCGAG-------------------------------------
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>chr5A_904
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-------------------------------CCTCCCCA--TGCCCCGGTCGAGTCTCCGTCCCACCGTACGTACTCCTC
TCCTCCTCCCTCTCGGCCTATTTAAACCGCAAGCATCGGCACGC--CAAGTGCACCAGTAGCAACGATCTCACGCGCAGA
AAACACAAGAGAGAGCGAGTAGAACCGATATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCCAAGA
AGGGCTCAGGCACTGCCACCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACGCCGTCGGGGCTGCCAGGACC
ATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGTG-CAGGAG
GAGCCGGCGCGGCGGACGCGAAGAACCTGTTCGTGGGCGTGGGAGCCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGGC
GGCGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACGGGCCCGCTCGGCGGCGTCGGGGG
CGGCGTGGGGAGCGTCGGCCCGTTCGGCGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGCG
CCCCGTTCGGCGGGTACGG---------------------------CGGCGT---------------------------C
ACGCCTTGAGTACGCCGCGGTGGCCGAGCTAGCTTGGGCGCTCTGGGACGTGCATACATGTACGTGACGAAGTGGCGCTC
TAGCTCATGGTGGATCGCACTAGCTTTGACCACTTGTTTCCTTGGACCTAGGGTGTTGTCATGGTATGGCGCAAGGTATA
TGCGCAGTAG------TACTTAGTTTTCAGGTCCGTGTACGAGAAGTAGCTGATTCGCTGGGA-----------------
GTGTGTGTGTGGCCAGTCAGGGTTTGTGACTGTTGTGTGGTTGTGTTTGGTCGTGTGAACTACCTGTGTATCCGACTAGC
TA---GCTGCTAATGGTATGTAGTAC---GTGTGATTCTCGTGGTGTCCTCAACTCAACTCGGTGTCCT---CGCAGTGT
TCCAAACTCCAGTGTTCATTTCGTGTGTGCGCGTCTCTTTTGTCTACGTGGCAATATTAACATAGGGAAAGAGGCAAGGT
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>chr5D_947
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-----------------------------------------------------------------------------CTC
GCCACCTGCCCCTCGGCCTATTTAAACAGCAAGCTCCAC-ACACCGCAAGTGCACCCGTAGCAACGATCTCACGCGCAC-
-AACACAAGGAAGAGCGAGTAGAACTGATATTTGTAGTTGGCTACTTATAG-AGAGCAGAC-------CCATGGCCAGGA
AGTGCTCTCGCAATGCAGCCTCCCTTGT---CCTGCTCTGCCTCGCGCTGGCGGCACACGCCGTGGCAGCGGCCAGGACC
GTGCCAGCTGCAGCTGGCGTCGCGGCGCAGGCCTCACTTCCGGG------CGCCACAGAGAGCGGAGCCGGTG-CAGGAG
GAGTGGGCGCAGTGGACGCGAAGAACCTGTTCGTGGGCATGGGAGGCATGGGGAACCTGCCGGGCCTCCCGGCCGTCGGC
GGTGGCTACGGCGGGGCCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGTATCACGGGCCCGCTCGGCGGCGTCTTGGG
TGGCGTGCGGAGTGTCAGTCTCGTGGGTAGCGTCGGGGGTGCCGGCGGTATCCCGTTCGGGGGCTTCGGTGGGGGCGGTG
CCCCGTTTGGCGGGCTCGGAGGCGGGTACGACGGCGGAGCCGCCGCCGGCGT---------------------------C
ACGCCTTGAGTACGCCGTTGTGGCCGAGCTAGCTAGGGCACTCTGGGCCATGCATACATGTACGCGACCGTCCTCAGCAG
TGGTCTATGGTGGATCGCGCTAGCTTTGCCTGCGTAGCTGCGTGTATCTAGG----------------------------
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>chr5A_1111
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-----------------GCCTCGC---T---CCTGCTCTGGTTCGCACTGGCAGCACACGCCGTGGTGGCTGCGAGGACC
GTGCCCGCTTCAGCTGGCGGCGTGGCGGAGGCCTCACTTCAAGCCGCCGCCACCACGGAGAAGGGCGCAGGTGACAGCAG
GAGCGCGCGTGGCGGACGTGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGTGACCTGCCGGGCCTCCCGGCCGTCGGC
GGCGGCTACGGCGGGGGCTTCGGCAACAACGGAGCCGGCTTCTTCACCGGCGTTACGGGTCCGCTTGGCGGCGTTGGGGG
CGGCGTGGGGAGCATCACTTGGCTGCATGGCGTGGTGGGAGCTGGCGGTATCTCTATCGGAGGGTTCGCTGGTGGTGGCA
TCCCGTTCGGCGGGCTCGGAGGCAGGCACGGCAGCGGAGGCGCCGGCGCCGT---------------------------G
GCACCTTGAGTACGTCGTCTCGGCCGAGCTGGCTAGGGCGCTCTGCGACGTGCATATACTTGCGTGACCATATGGCATGC
TGAGGCATGGTGGATCG---------------------------------------------------------------
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>SNPs
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---------------------------------------------------------------S----------------
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-----------------S---------------------------S---------------------SSSSSSSSSSS--
-------------S------S-----------------------------------------------------------
--------------------------------------S------S--S-------------------------------
--------------------------------------------------------S-----------------------
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-------S----------------------------S-------------------------------------------
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-----------------S--------------------------------------------------------------
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-------------------------S------------------------------------------------------
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----------------------------S----------------------S----------------------------
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--------------------------S---------------------------------S-------------------
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---------S-------------------------------------------------------------------
>forward_606
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--------------------------CGTGGAGAGGGTTTTTCGGA----------------------------------
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>reverse_2461
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------------------------------------------------------------GTATTGCCGGAGTAGCATTC
AC------------------------------------------------------------------------------
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