>input_sequence_76576
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------------------------------------------------------ATGGCCCTGGGAGACGACTCTCCGGC
ATCCTACATCCGCATGGTATGTACTAGTACAATCGCCTTCTTCCCATCCTTCAAACTGTATACCTTTATCTGCTGCTC--
-----TC------TTCGAGCTAGGAGATAGATGATCACCAGCTACGCTTTTCGATCGGGTCACCTCACCGGGCTTGCATG
CGCAGGACATCGACTTCTCACGTAGACATCAGAATTGGTTAACTAATTAAGGTGGGGTTTT-AATTTGCAGGTGCACCAT
CTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTCGGCCG--GTCTCAAATCAATTACTGCTCCCTCTGATCAGCAGGAATATATTTATCTGTAC
TGACGCTGAGTTGGCGTGCTTGCAGTGTGGAAAGAGTTGGAGAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCA
GTTGAGATCAGAAAAGGAAGGCCGAAGCAGCAGCAGCAGCAGC---GACAGCAGCTCCTAA-------------------
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>chr4B_1_TraesCS4B01G202900
AATCGGGGCCAATTGATTTGAATGAAAATTTTGGGGCCGACGGATCCGCGCGGGAGGCAGCGTGCATGCGTGACAGCTAC
CCCGCCATGTAAAG-CCCCAAGCACCGGCCCGCGCACCACGCAAGCATTTTGTGCGTCCGGTTCGTCCTGGG-CCCGTCG
CACGCCCCGCTCCATCCATGC-------------AATGCA-----TGTTGTACACCTGGAGACGGCGGGATCCACCGTAC
GCTGTCGCTTCAAGCGCTGGCCATTACAGCAAGCTA-------------------------------------------A
TGCTCACTGCT-----C-----GGAGGAAGTACACAGTGAACCGTCGTCACATCGGCATGACACTGAATTGACCGCGCAA
CAAACCCCGACCGTACGGGACGTCTACTACAACACCACACTATTTGCCAGTGATTGAATTTGCACTTGAGGATCCTCAAG
-----TGAGCCGGCGAGGGGAACAGCACAGGGGCCA---AGAAAGAAAGAAAAAGAGCGGCGTGGAATCCCGAATCCCCA
CGTTGGCCGTCGCGACGTGGCCGGCGGGGCCAGGTGGCACGTGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTAC
GCCCGGACCCTTCTTCAGGCATGGCATGGACGACCTGGAAG----CAGCCGAGCCTACGACGGGATAGGGATTAGATATT
TGCCACAGCATCTCCACATCCCTTTCCGATCTCTCGCACGGCGAATCGCCTCTCCTCCAATCCCCTGCCCGCGCCCACGT
GAACGCACCCGCCCGCCTTTACGGCCCCCGCATCCGCGCGCCACGTCCATGCGCCGGCTGGCTGAGCCACGTCCCCTAGG
AGG---------GCACGCCGGTCCACGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACAGTTCCTCAGATTACG
ATTACGATCGAGGAAGAGGAAGAGCAAGAGGAATAGCAGGAAGAAGATTACAATATGGCCCTGGGAGACGACTCTCCGGC
ATCCTACATCCGCATGGTATGTACTAGTACAATCGCCTTCTTCCCATCCTTCAAACTGTATACCTTTATCTGCTGCTC--
-----TC------TTCGAGCTAGGAGATAGATGATCACCAGCTACGCTTTTCGATCGGGTCACCTCACCGGGCTTGCATG
CGCAGGACATCGACTTCTCACGTAGACATCAGAATTGGTTAACTAATTAAGGTGGGGTTTT-AATTTGCAGGTGCACCAT
CTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTCGGCCG--GTCTCAAATCAATTACTGCTCCCTCTGATCAGCAGGAATATATTTATCTGTAC
TGACGCTGAGTTGGCGTGCTTGCAGTGTGGAAAGAGTTGGAGAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCA
GTTGAGATCAGAAAAGGAAGGCCGAAGCAGCAGCAGCAGCAGC---GACAGCAGCTCCTAATGACCAACAGCAGATGCGT
GCCGCTTGCTCT-----AGATGTTGGCCATTCTGCACTTAGTAGAACGAATAATTAGAAGACCGATGGCGCGGGAGGTCA
GCTAACGCGACGCGATCTATGTGTGGTGGTGCATGTACAGCCGTACAGGGTCGGGTTGGCAGGA--------------AT
CAAAAGCCAGCTCGTACTGTTGCGATATTCTTCAGATG-------TACTAATTGTACTCGTCATGTGTCCCGTCTTCTCT
C----------------------------------------------CCACCGTGTGCTAATGGTCCAAGCAACGTAATA
TGGCACGCAAAAAATGCTCTGCTCCTGCAATCGGATTCTCACTTTTTTTCTTCTCATAACGAACAAAAAGAAGAA-CGCG
GTAGTCCTGCACAGAG-AAACACTGTTCTCCCCTAACCAGAGATACTAGTACACATGATCACGGGAAAATGGAGGAACCA
TATAC--------GCTCGGCGAGAAGTAGGTGTACACGAACGTGCTCCGTGACGGGATGGGACATCTTGTCTTTGGCTCG
CTCAAGCCAGCATGGAACGGTCCAAACAAGGAAAGTTTGCATCGGCGCCATACGTGTGTGCAGTGCCGTGGAATCGGTGA
TGGGATTCTGC---ACGGGACAAGGACCGGACCCCTCCCCTCTTCTTTCCTCTGATTTTGACGTGACAAGCAACAACTTC
GCGAGGCAAAATGGGCAAAAATAACCTCGAAACGCCACTAATTCACAATGGGTGAAT-----------TTTTTTCACCAG
TTGACCCTTTTGTGTAGCGGACC-----------CTACACTACACTGAGTAGCGGCTGATTAATAGGTGCGACACGTCTG
GCGGTGTGGCACCCTAAGGCTGGGCAAGGGCCCACCTCACC---------------TCTAGCCGACATGCGCTACACTA-
-----------CCTAGACGAAAGGCGCTGCACGCGCACTTACTAACCGCACTGCCGCGGGCCGGCCCTCCCTAGCCCAGC
CCCGACACAAACCCCATGAGCATTTGAACAGAGGAGT------CGCGATTCCCTCTCTCTCCCCTCTCAAATCCCTCCCC
A
>chr4A_1
AACCGGGACCAATTGATTTGAATGAAAATTTTGGGGCCGACGGATCTGCGCGGGAGGCAGCGTGCATGCGTGACAGCTAC
CCCGCCATGT-AAG-CCCCAAGCCCCTGCCCGCGCACCACGCAAGCATTTTGTCTGTCCGATTCGTCCTGGGCCCCGTCG
CACGCCCCGCTCCATCCATGC-------------AATGCAATGCATGTTGTGCACCGGGAGACGGCGGGATCCACCGTAC
GCTGTCGCCTCTAGCGCTAGCCATCACAGCAACTCAGCAAGCTTCGTGAGTGAGTAGTATGATTGCTTGATTGGTTGCGA
TGCTCACTGCTCTCTGC-----GGTGGAAGTACACAGTGAACCGTCGTCACATCGCCATGACACCGAATTGACCGCGCAA
CAAACCCCGACCGTGCGGGACGTCCACTACAACACCACACTATTTGCCAGTGACTGAATCTGCACTTGAGGATCCTCAGG
CGAGCCGAGCCGGCGAGGGGAACAGCACAGGGGCCAGAAAGAATGAAAGAAAAAGAGCGGCGTGGAATCCGGAATCCCCA
CGTTGGCCGTCGCGACGTGGCCGGCGGGGCCAGGTGGCACGTGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTAC
GCCCGGACCCTTCTTCGGGCATGGCATGGACGACCTGGAAGCGGACAGCCGAGCCTACGACGGGATAGGGATGAGATATT
TGCCACACCATCTCCACATCCCTTTCCGATCTCTCGCACGGCGAATCGCCTCTCCTCCAATCCCCTGCCGGCGCCCACGT
GAACGCACCCGCCCGCATTTGCGGCCCCAGCCTCCGCGCGCCACGTCCATACGCCGGCCCGCTGAGTCACGCCGCCGGGG
GGAAGAAACGCCGCACGCCGGTCCATGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACGGTTCCTCAGATTACG
ACTACGATCGAGGAAGAGGAAGA---------------------AGA-TACAATATGGCCCTGGGAGACGACTCTCCGGC
CTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCTTCCCATCCCCTAATTCG--TACCTTGGTCTGCTGCTCCC
TTGGTTCTTCTAGTTCTAGCTAGCAGATAGATGATCACCAGCATCA-----------------------------GCATG
CACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTCAACTAATTAAGGTGGGATTTTTAATTTGCAGGTTCACCAT
CTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTCGGTC--CGTCTCAAATCAGTTACT---TCCTCTGATCAGCAGGAATACACTTATCTGTAC
TGACGCTGAGTTGGCGTGCTTGCAGTATGGAAAGAGCTGGAGAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCA
GTTGAGATCAGAAAAGGGAGGCCGAAGCAGCTGCAGCAGCAGCAGCGACAGCAGCTCCTAATGATCAACAGGAGATGCGT
GCTGCT-----T-----AGATGTTAGCCATTCTGCACTTAGTAGAACGAATAATTAGAAGATCGATGGGGCGGGAAGTCA
GCTAACGCGACACGATCTATGTGTGCTGGTGCATGTACAG----------------------GA--------------AT
CACAAGCCATCTCGTACTGTTGCCATATTCTTCAGATG----------TAATTGTACTCATCATGTATCCATCTCCCACA
GCTCTCGGTTCAGACTTTTCATACCTCTGTGGAGATTACCTACGGCACCACTGTGTGCTAATCGTCCAAGCAAAGCTTTA
TTCTGTAATTGGATCTCCGTC--------------------------TTCTCTTTCTAACGAGCAAAAAAAAAAA---CG
GTTGTCCTGCACAGAAAAAACACTGTTCTCCCCTAACCAGAGATACTAGTACACATGTTCACGGGAAAACGAAGGAAACA
TGCTA-----TATGCTCAGCGAGAAGTTGGTGTACACGAACGTGCTCCGTGACGGGATGGGACATCTTGTCGTTGGGTCG
CTGAAGCCAGCGTGGAACGGTCCAAACAAGGAAAGTTTGCACCGGCGCCATACGTGTGTGCAGTGCCGTGGAATCGGTGA
TGGGATTCTGCTGCACGGGACAA-----GGACCCCTCGCCTCTTCTTTCCTCTGATTTTGACGTGACAAGCAACAACTTC
GCGAGGCAAAATGGGCAAAAATAACCTCGAAACGCCACTAATTCACAAAGGGTGAAAAAAGGGTGAAATTTTTTCACCCA
ACTAATCCTTT----------------------------------TGTGTAGTGGCTGATTAATAGGTGCTACACGCCT-
GCGGTGTGGCACCCTGAGGCTCGGCAAGGGCCCACCTCAC-TCTAGTTGTACAACGTCTAGCCGACATGCGCTACACTGC
TTTGTGTAGCGCCTAGACAAAAGACGCTACACGTGCACTTACTAACCGCCAC------GGCCGGTCCTCCCTAGCCTAGT
CCCCACACAAACTTCAAGAGCATTTGAACAGAGGACGTCTGGACGCGATTCTCTCTCTCTC-------------------
-
>chr4D_3
T--CGGGACCAATTGATTTGAATGAAAATTTTGGGGCCGACGGATCTGCGCGGGAGGCAGCGTGCATGCGTGACAGCTAC
CCCGCCATGT-AAGCCCCCAAGCGCCTGCCCGCGCACCACGCAAGCATTTTGTCTGTCCGGTTCGTCCCGGGCCCCGTCG
CACGCCCCGCTCCATGCCTCCATCCATGCAATGGAATGCA-----TGTTGTACACCGGGAGACGGCGGGATCCACCGTAA
GCTGTCGCCTCTAGCGCTAGCCATGACAGCAAGCTTCGTGATGA-----GTGAGTAGTATGATTACTTGATTAGTTGCGA
TGCTCACTGCT-----CTATGGGGAGGAAGTACACAGTGAACCGTCGTCACATCGCCATGACACCGAATTGACCGCGCAA
CAAACCCCGACCGTGCGGGACGTCTACTACAACACCACACTATTTGCCAGTGATTGATTCTGCACTTAAGGATTCTCAAG
-----CGAGCCGGCGAAGGAAACAGCACCGGGGCCAGAAAGAATGAAAGAAAAAGAGCAGCGTGGAATCCCGAATCCCCA
CGTTGGCCGTCGCGACGTGGCCGGCTGGGCCAGGTGGCACGTGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTAC
GCCCGGACCCTTCTTCGGGCATGGCATGGACGACCTGGAAGCAC----CCGAGCCTACGACGGGATAGGGATTAGATATT
TGCCACAGCATCTCCACATCCCTTTCCGATCTCTCGCACGGCGAATCGCCTCTCCTCCAATCCCCTGCCCGCGCCCACGT
GAACGCACCCGCCCGCATTTGCGGCCCCAGGCTCCGCGCGCCACGTCCATGCGCCGGCTGGCGGAGCCATGCGGCCTGGG
AGG---------GCACGCCGGTCCACGGACCCGGCCCAGGGAGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATG
TATAAATAGGTTCCTCCTCCGTCGACTCTGCACGCCTTATCACCACACAACCCCATACACACACAGTTCCTCAGATTACG
ATTACGACCGAGGAAGAGGAAGAGCAAGAGGAATAGGAGGAAGAAGA-TATAATATGGCCCTGGGAGACGACTCTCCGGC
CTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCTTCCCGTCCCCTAATTCG--TAGCTTGATCTGCTGCGCCC
TTGGTTC------TTCTAGCTAGCAGATAGATGATCACCAGCATCA-----------------------------GCATG
CACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTTAAGTGATTAAGGTGGGC--TTTAATTTGCAGGTGCACCAT
CTGATAGAGAAGTGCATGACGTTCAGGATGAGCATGGAGGAGTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCC
GGTCGTCACCTCCACAGGTAGGCCGGCGTCTCAAATCAATTACTGCTTCCTCTGATCAGCAGGAATATATCTATCTGTAC
TGACGCTGAGTGGGCGTGCTTGCAGTGTGGAAAGAGCTGGAGAAGGAGAACAAGGAGTTCTTCGACAGCTACAACAAGCA
GTTGAGATCAGAAGGCCGAAGC---AGCAGCAACAGCAGCAGC---GACAGCAGCTCCTAATGACCAACAGGAGATGCGT
GCTGCT-----TGCTCTAGATGTTGGCCGTTCTGCACTTAGTAGAACGAATAATTAGAAGATCGACGGCGCGGGAGGTCA
GCTAACGCGACGCGATCTATGTGTGGTGGTGCATGTACAG----------------------GGTCAGGTTGGCAGGTAT
CAAAAGCCAGCTCGTACTGTTGCGATATTCTTCAGATGGAGTACGTACTAATTGTACTCATCATGTGTCCCATCTTCTCT
C----------------------------------------------CCACTGTGTGCTAATGGTCCAAGCAACGCATTA
CGCCACGCAAAAAATGCTCTGCTCCTGCAATCGGATTCTCATTTTTTTTCCCCTCATAACGAACAAAAAGAAAAAGCGCG
GTAGTCCCGCACAGAG-AAACACTGTTCTCCCCTAACCAGAGATACTAGTACACATGATCACGGGAAAATGGAGGAAACA
TACTACTGTTTATGCTCAGCGAGAAGTAGGTGTACACGAACGTGCTCCGTGACGGGATGGGACATCTTGTCTTTGGCTCG
CTCAAGCCAGCATGGAACGGTCCAAACAAGGAAAGTTTGCATCGGCGCCATACGTGTGTGCAGTGCCGTGGAATCGGTGA
TGGGATTCTGC---ACGGGACAA-----GGACCCCTCCCCTCTTCTTTCCTCTGATTTTGACGTGACAAGCAACAACTTG
GCGAGGCAAAATGGGCAAAAATAACCTTGAAACGCCACTAATTCACAATGGGTGAA-----------ATTTTTTCACCAG
CTGACCCTTTTATGTAGCGTCCGACAGGTCGGCGCTACACTAGACTGAATAGCTGCTGATACACGCCTGA----------
-CGGTGTCGCATCCTGAGGCTGGGCAAGGGCCCACCTCACCTCTAGTTGTGCAGCGCCTAGCCGACATGCGCTACACTAC
CTTCTGTAGCGCCTAGACGAAAGACGCTACACGTGCACTTACTAACCGC-----CGCGGGCTGGCCCTCCCTAGCCTTGC
CCCCACACAAACCCCAAGAGCATTTGAATAGAGGAGT------CGCGATTCCCTCTCTCTCCC--CTCAAATCCCTCCCC
A
>SNPs
--S----S--------------------------------------S---------------------------------
----------S------------S--S--------------------------SS-------------------------
--------------------------------------------------------S-----------------------
--------S--S------S-----S-------------------------------------------------------
-------------------------------------------------------S--------S---------------
--------------S--------------------------------------------S--------------------
-----S-------------------------------------S------------------------------------
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----------------S---------------------------------------------------------------
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----------------S---S-------S--S---------------------------------------S-S---S--
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------------------------------------S----------S--------------------------------
S---------------------S---S--------S-S-----------SSS--SSS-SS------S-------------
----------------S------S------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-S--------S--S---------S--------------------------------S-----------------------
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-----------------------------------------------S--------------------------------
------------------------------------S-------------------------------------------
-----------------S-----------------------------------------------------S--------
--S---SSSSS--------------------------------------------------S------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSS------------------
-----------------------------------------------------------S-----------S--------
---------------------------------------------------S-----------------------S-S--
--S--------------------------------------S---------S--------------------S-------
-----------------------------------------------------------------------------S--
--SSS------------S--------------------------------------------------------------
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-----------------------SSSSS----------------------------------------------------
--------------------------------------------------------S-----------------------
S----------S-------SS-S-------------------S---------------------------S-----S--S
---------------S----------------------------------------------------------------
-----------------------S----S----S---------------SSSSS----------------------S---
---S------------S----------------------------------------------SS---------------
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>forward_385
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---------------------------------------------CGTCACATCGGCATGACACT---------------
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>reverse_1912
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-----------------------------------------------------------------------GTCTTCTCT
CCCACCGTGTG---------------------------------------------------------------------
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