>input_sequence_76489
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-----------------------------------------------------ATGGCGGGCGTGGGTCGCAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCGTCGTCATCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCCGGCGTAG
TCGGCGCCGCGTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTTGCCACCTCCGCCTCGTCA
GCGCTGGTGGCCTGGGCGATTACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATTCATATTGGTGGGTACCGCGGATG
GCGCCTCAGGGTGCTGGAGGCGTTCGTGATCATTTTGATGTTCACGCAGCTGCTCTACGTGCTCGCGCTGCACTCCGGCC
TCTTCGGGAACCAGTTTGGCAACCATGCTGGTGCTGGTGGGTACGGAGCCGAGCACGGCGCGTAT------GGCGCCGGC
GACCCGCACAACAAGGGCATGGGCA------CCGGCGGCGTCGCGAGGGTGTAA--------------------------
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>chr5D_1_TraesCS5D01G558800
ATGTGCATCCAGATAAATGCTTATATAGCTTGAAAAATATTCACCTATTTTCCTCAATAGAGAATAAAAAAAGTAGAGTG
CGAAATCAAAAAGTTGAAAAGGGAAAATAAATAACATAAAAAAAGAAAAATATGATACATGAAAAAGCAGTACGAATAGT
CCATCATTTAAAAATAGCCAAAAGGCATCTTACATATAATATTCATTAATGAAAACAATAGCCAAGATAAGTGAAAATGT
AATTACGTTGCAAAACATACAAGCCTCTTTTTAACTCCGGTATATATGCTGTCCATCAGAGGTTGAAATTGCAGTGAATC
AATAAAATGAAGGGACACTTATAAACGCACTCAGCATACGGTGTTTTAAAGACCGCAGTTTTCTTGGCAGGACAGGATCC
GAATATCCCTTAATTTGCTATTATTATTATTCCACTATAGGAAAGACACCCGTGTTTTCTTTTAGCTGAATGGATGAAGA
GTGTGAGGTGGAAAAAGCAGAGCAAACACGTGACACGTAGTACAATGGGAAGCGGTGAGGAAGGAAGAGGAAGAGGATAA
GAGCAGTGCAACTTATACTAGGATCCAAGGTAGTAGTGTGGTGGTAAGCTACAAACCGTGGGCGGTGGGCAGCGCCACGT
ACGGTCTCTCGAAGCCGCTGGAACCATCCGCCAACGGCTAGAAGAAGCAAGCAGCGGCAGCTGCCCATGCCCCCTGCATG
C---CGCTCACCACGCGTCGCGCCACCCG------TAAGCGGCCGCATCCCACGTGTCCCATCGTTCCCTACCTCCTCTG
CATCTATCTATATATCCCACTACGCTCCACCCCCGGCACCTCATCCACAAATCCACATCCTCGTCTACAATCTCCCGTCC
TTCTCAATTCGATCTCTTCCACCAAGCCACTTCAGTACGCGACAGAAGCCAGTGAATCAGTGAGCGACAGGCAGAGAGCT
CGGCCTCGACCAACAAGAAG---AAGAAGAAGAAAGAAGCAA-GGCAGCAGCAATGGCGGGCGTGGGTCGCAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCGTCGTCATCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCCGGCGTAG
TCGGCGCCGCGTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTTGCCACCTCCGCCTCGTCA
GCGCTGGTGGCCTGGGCGATTACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATTCATATTGGTGGGTACCGCGGATG
GCGCCTCAGGGTGCTGGAGGCGTTCGTGATCATTTTGATGTTCACGCAGCTGCTCTACGTGCTCGCGCTGCACTCCGGCC
TCTTCGGGAACCAGTTTGGCAACCATGCTGGTGCTGGTGGGTACGGAGCCGAGCACGGCGCGTAT------GGCGCCGGC
GACCCGCACAACAAGGGCATGGGCA------CCGGCGGCGTCGCGAGGGTGTAAGCCAAGCCGGTGATCGATCTCGGCGT
GGTCGGGCGCTGGGATAATAAGTAGTTGTATGTATGTGTCAGTGTTAGTATGGGTCACGTACGGTGTGGGCTTAATGCAT
AGTGTACTTGGTGGTGGTGTGTGTGCATGGCTGTAGACATGTAGTACATGTACACGTACCTAGTGGGTGTGTTCTTTTTG
GCAGGGACACTAGTACTTGCGTACTAGTACATGACCCGCAAAAAAAGAAGTACTAGTACATGGTTTGTTTATGTGGTGTC
TAGCGAGCAGCTTTCCGATGTACTAATCGGATGGATGGATGCTCTTCTCCGTCCGCTGCCTCAGTCCCGGCAATGTCTGC
TTGGACGAAGTTTAATTTACAAGTAGCATGATATTATCGATTAATTTGCTTCTTCAGTTTGTGGTGAAAATATGAGATCT
ATGCTTGCGTGCACTGTTTTTTCTTGAAAGTGTCGCTTTTTGAGTCTTAGAAGGGAAAGAGGGATTGGTGGAATAGAACA
AATCCTAGTCTATCTCCTTTTTTTAATAATCAATATACTCAACATTCTCCACAATTATTACTGTAGCGAGTAACTGTAGC
GGCGACGTAGATGGTGAGACTGGAGAAGAATCCGAAGGCAAGCTGACGGACACCCCCCGCAGTCATAACAGTCGTCGTGG
CTGGAGTGAAACCCGACGGAGTTGCTCAAGCAAGGCGGTAGCCCTTTGTGTCGTTTGTCGAAGTAACCGAGAGCGTAGGA
TGGTGTGGTTCGTTTGTCGAAGTAACCGAGAGCGTAGGATGGTGTGGTCGAGGTAGAGGTAGTCGTGCGAAGAATGTCGT
GGTCAATGTCGAGTCAGGGTAGCTGGTGTTGGGGAAGTCACCCGTGGAGCCTGCGGGCGCAAGGAGGCGCCAAGTTAGTG
ATGGGCGCAGTGGTGTCGAAGTAGTGATGGGCCGAGAAGAAGATGTGGTTGACGACGCGTCGCGCCGGGTTTGCCAAGCC
CGAAAACACGTTGT
>chr4A_680
AGCAG---------------------------------------------------------------------------
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------------------------------------------------AAGCAGCAGCAGCAGCAGCTTCAGCTCGGTGT
CAAGCGCTCACCACGCGTCGCGCCACCTCCATTTCTAAGCGGCCGCATCACACGTGTCCCGTCTTTCCCTACCTCCTGTG
C----ATCTATATATCCCACTACGCTCCACCCC-GGCACCTCATCCACAAAGCAATCAC--------CAATCTCCCATCC
TTGTCGATTCGATCTGTTCCACAAAGCCACTTCAGTGCTCGATCCAAGCCAACAACAA----------------------
----------CAACAACAAC---AAGAAGAAGAAAGAAGCAA-GGCAGCAGCAATGGCGGGCGTGGGTCGCAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATAGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCCGGGGTCG
TGGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTCCGCGTCCTCC
TCGCTGGTGGCCTGGGCGATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGTACCGAGGGTG
GCGCCTCCGGGTGCTGGAGGCGTTCGTCATCATCCTGGCCTTCACGCAGCTGCTCTACGTGCTGGCGCTGCACTCTGGGC
TGTTTGGCAACCAGTTTGGTAACCATGCTGGTGGA------TACGGCGCGGAGCACGGCGGGTAT------GGCGCCGGC
GATCCGCACAATAAGGGCATGGGCA------CCGGCGGCGTCGCCAGGGT------------------------------
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>chr5B_931
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-----------------------------------------------------------GTGAGCGACAGGCACTGACCT
TGTCCGGGAAGAAGCAAGAAGCAAAGAAGAAGAAAGAAGCAA-GGCAGTAGCAATGGCGGGCGTGGGTCGTAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATCGTCATCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTAGCCGGGGTCG
TTGGCGCCGCTTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTCGCCACCTCTGCGTCCTCC
TCGCTGGTGGCGTGGGCGGTCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGTACCGCGGGTG
GCGCCTCCGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTCACGCAGCTGCTGTACGTGATAGCGCTGCACTCTGGCC
TCTTCGGCAACCAGTTCGGTGGTAACCATGCTGGCG---GGTATCCGGCGGAGCA---CGCGTAC------GGCGCCGGC
GACCCGCACAACAAGGGAATGGGCA------CCGGCGGCGTCGCCAGGGT------------------------------
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>chr4A_982
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---------------------------------AAGAAGAAACGGGAGCAGCAATGGCGGGCGTTGGGCGTAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATAGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCCGGGGTCG
TGGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTCCGCGTCCTCC
TCGCTGGTGGCCTGGGCGATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGTACCGAGGGTG
GCGCCTCCGGGTGCTGGAGGCGTTCGTGATTGTTCTCATGTTCACGCAGCTGCTGTACGTGCTGGCGCTGCACTCGGGCC
TCTTCGGGAACCAGTTCGGTGGTAACCATGGTGGTG---GGTATCCGGCGGAGCA---CGCGTACGGCGCAGGCGTCGGC
GACCCGCACAACAAGGGCATGGGCA-------------------------------------------------------
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>chr5D_989
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----------------------------------------AA-GGCAGAAGCAATGGCGGGCGTGGGTCGTAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATCGTCATCGGGTTCGCCAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCGTCTTCGCCATCCTCGCCGGCGTCG
TCGGCGCTGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGCGACAGCCTCGCCACCTCCGCCTCGTCG
GCGCTCGTGGCGTGGGCGATTACCGCCTTGGCCTTTGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGTACCGCGGGTG
GCGGCTCCGGGTGCTGGAGGCGTTCGTCATCATTCTGATGTTCACGCAGCTGCTGTACGTGCTCGCGCTCCACTCCGGCC
TCTTCGGGAACCAGTTCGGTGGCAACCATGCTGGTG---GGTATCCGGCGGAGCA---TGCGTACGGCGCAGG---CGGC
GACCCGCACAACAAGGGCATGGGCATGGGCACCGGCGGCGTCGCCAGGGTCTGAGCT-----GGTGATCGATCT------
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>chr5D_990
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-----------------------------------------A-GGCAGTAGCAATGGCGGGCGTGGGTCGTAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATTGTCATCGGCTTCGCAAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGAGCCACCTTCTACTTCCTCGTCTTTGCCATCCTCGCGGGCGTCG
TCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACATGGCGCGGCGACAGCCTCGCCACCTCCGCCTCGTCC
TCGCTCGTGGCATGGGCCATCACCGCCTTGGCGTTCGGGCTGGCGTGCAAGGAGATCCACATCGGCGGGTACCGCGGGTG
GCGCCTCAGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTCACGCAGCTGCTTTACGTGCTGGCGCTGCACTCCGGCC
TCTTCGGGAACCAGTTGGGTGGCAACCATGCTGGCG---GGTACCCGGCGGAGCA---TGCGTACGGCGCAGG---CGGC
GACCCGCACAACAAGGGCATGGGCA------CCGGCGGCGTAGCCAGGGT------------------------------
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>chr5B_998
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--------------------------------------------------GCAATGGCGGGCGTGGGTCGTAACATGGTG
GCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCATCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAA
CGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACCTTCTACTTCCTCCTCTTCGCCATCCTAGCCGGGGTCG
TCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTGGCCACCTCCGCCTCGTCG
GCGCTGGTGGCCTGGGCCATCACGGCGCTGGCCTTTGGCTTGGCGTGCAAGGAGATCCATATCGGCGGGTACCGCGGGTG
GCGCCTCCGGGTGCTCGAGGCGTTCGTCATCATCCTGGCCTTCACGCAGCTGCTCTACGTGCTCGCGCTGCACTCTGGCC
TCTTTGGGAACCAGTTCGGTAACCATGCCGGTGGTG---GGTATCCGGCGGAGCA---TGCCTACGGCGCCGGCGTCGGC
GACCCGCATAACAAGGGCTTGGGCA------CCGGCGGCGTGGCCAGGGTGT----------------------------
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>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----S--SSS-S-SS-SS-SSSS
---------------------------SS--------------------S----------S--S-------------S--
-SSSS----------------------------S-----------------S-S-SSS-SSSSSSSS---------S---
--S--S---------S------S-------------S-S---SSS------SSS-SSSS--------------SS--S--
S-S--SS--S------S--S------------------------------------------------------------
------------------------------------S-------------------------------------------
------------------------------------------------------------------------------S-
----------S--------------------------------------------------S-----------------S
--------------------------------------------------------S-----S--S-----------S--
----------------------------------S---------------------------------------------
-------------------S-------------S--SSS-------S--S------------------------------
--------------------------------------------S-------S---SSSSSS------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_543
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-------------------------------------------AATGGGAAGCGGTGAGGAAG-----------------
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>reverse_2386
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-----------------------------------------------------------------TGCGAAGAATGTCGT
GGTCA---------------------------------------------------------------------------
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