>input_sequence_76477
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-------------------------------------------------------------------------ATGGCGC
GGCGGGGCACGGAGGCGTTCCCGGACCTGGGCGCGCACTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTGCCCTTC
GACTGCGACGGCTGCGGCAAGGTGTTCTGCACGGAGCACCGCGCGTACGTTGAGCACGGCTGCCCGCGCGCGGCCGACCA
GGGCCGCACCGTCGTCGTCTGCGAGGCCTGCGGCGACTCCATCGAGCGCGACGGGGCGGACAAGACGGATGCGGAGATCC
TCGAGACGCACGCGCGGTCGCGCCGGGGCTGCGACCCGGCCAGGAAACTCAAGCCGCGCTGCCCCGCGCGGCGGTGCAAG
GAGACGCTCACCTTCTCCAACACGAGCCACTGCAAGGGGTGCGGGCAGAAGCTGTGCCTCAAGCACCGGTTCCCCGAGGA
CCACGAGTGCTCGCGCGTGTCGCCGGCGGGGGCCGCCGCCGCCGCGAGGAGGGCCGGCGACTGCGGCCGCGACGCGCAGA
AGACCAAGGACGGCGGTGGGTGGGCGCTGCCGCCGTTGGTCCGGAATTCCAAGATGTTCTGA------------------
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>chr5D_1_TraesCS5D01G207400
AACTTTTT---------------------------------------------------------------TTCAAAGTT
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCGGACGAACTTTTTTCAAATC
CGATGAACTTTTTTCAAATCAGATGAACTTTTTTTATAATTCGATGAACTTTTTTCAAATCTGATGAACTTTTTTTCAAT
TCTGGTGAACTTTTTTGAAATTCGATGAACTTTTTT-CAAAACGGATGAAATTTTTTCAAAGTCGATG------------
-----------------------------AACTTTTTTTTT-GAATTTGATGAA-CTTTTTC--AAATCCG---------
-----AGAATTCGATGAACTTTTTTCAAAT--------------------TTGATGAACTATTTTCAAATCTGATGAACT
TTTTT-------------------TCAATTCTGGTGAACTTTTTCCAATTTTGATG------------------------
------------------TTTTTTTT----AAATTCGATGAA-CTTTTTTCAAAATCGATGAACTATGTGCCTAAAAAAC
TGTAGTACATACTGTAGTAAACCGGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTAGCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAGCCAACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCGCGGGCGCCACGATCCCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTCGATCAAAACGG
AACACCACGTCACGGCCGACGCGGACGCCTGGTGCCCAGAGCAAACCAGCTCGGATTCGAGACCGCCTCGCCTAAGCAAA
GGCGCCTCCAGAAGGCCAAACCGTCA----------------------------------CCATCACGTTCTTCTTGCAC
AATAAGAAAGGCGAGGCAAACCGCGTCCGCAACGGCGACGGCGAAGCCCACCCGAAGC-----------TATAAAAGTAC
CGCGTCGTCCCGCCGTGATCACACCA---CACGCAACGCAAGCCTTCCTTCGCACCCGAACGCAAGAAAGACAGACAGCA
A-------CGCGGCGT-------GGGGAAAAGCAGGAGCGAAGCGAGGGATCGGGAGGAACACCGGCGAGGCCATGGCGC
GGCGGGGCACGGAGGCGTTCCCGGACCTGGGCGCGCACTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTGCCCTTC
GACTGCGACGGCTGCGGCAAGGTGTTCTGCACGGAGCACCGCGCGTACGTTGAGCACGGCTGCCCGCGCGCGGCCGACCA
GGGCCGCACCGTCGTCGTCTGCGAGGCCTGCGGCGACTCCATCGAGCGCGACGGGGCGGACAAGACGGATGCGGAGATCC
TCGAGACGCACGCGCGGTCGCGCCGGGGCTGCGACCCGGCCAGGAAACTCAAGCCGCGCTGCCCCGCGCGGCGGTGCAAG
GAGACGCTCACCTTCTCCAACACGAGCCACTGCAAGGGGTGCGGGCAGAAGCTGTGCCTCAAGCACCGGTTCCCCGAGGA
CCACGAGTGCTCGCGCGTGTCGCCGGCGGGGGCCGCCGCCGCCGCGAGGAGGGCCGGCGACTGCGGCCGCGACGCGCAGA
AGACCAAGGACGGCGGTGGGTGGGCGCTGCCGCCGTTGGTCCGGAATTCCAAGATGTTCTGATTAGCCTGAAGCTGAAAT
TGTGGCTGGGATTTAAGCAATTTGTGGAACGTTTGTTTTCTCCGGTGTCAAATTTCCAATTGTGCACATTT---------
--TTGTTGTTGTTAAATGAAGAATCCAATTCAATTTATTTTATGCTGCGGTTGGTTCGAAATGTCGAATTGAACTCATCT
ACAACGTGTCAAATCCTCTATTCTAAAAGGTTCTTTTACTGGCTTTGCCTTTGGTCCTTGGTTAAATCCGCTTATAGGGC
CATCATCAATGCTCTAGCGCTTGTTTGGACGCTAGAAAAAAAACAAATCAAAAAATTAGCTTAGCTTCTGATGGGAAAAC
TTTGGATCTTTATCATCAATCATAGCAGTACAACGAATATAAGAAATGACAAAAATACATTCAAATTTGTAAACCACCTC
GCGACGGCTACCATCACTAAATCAACCCGAAGAGTAGAAATAACAAAAATTACATCCAGATTCGTAGACCAACACACCAA
AATAGTAACCGCCGCCGATGAAGAGAAAACGTAGATCAAAACGATTCAATCTGCAGACATATGAACGCAGATGAATGAAG
ACCGGATTCAAGTAGATCCACCAAAGACAACCACCAACCTAATCCCGCAAGATCCGTCGGAGACACACCTACGCCCGCCC
TCCAGACAACCACCGACCTAACCCCGCAAGATCCATCGGAGACACACCTCCGCCCGCCCTCCAGCGATCCTAGACACATC
ACCGGAAAGGGGCTAGACGGGGAAATCTTATTCCATCTTCAGAGTGCCGCTATCATCTCGCCTTCCTGAGTAGGACATAA
ACCCTACACAACTAAAGAAACATTAAAAATGAAGCCCTCCCACTAGCAAGAGTCGGGAACCTCCATGCCCCATGGCCAAA
TAAGATGAGGCAGATTGACGATGCCGTCGATGGAAGGCAGATACCCTAGTCGCTTGTTCACTTGAGGTGAGAGACGCAGA
CGAGAGACGAAGGGTTAACGATAGCTTAACGTG
>chr1D_1
TTTTTTCTGCAAAATG----------------------------------------------------------------
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATTTGATTAACTTTTTT---------------------AAATC
CGATGAACTTCTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTGATGAACTTTTTTTCAAT
TCTGGTGAACTTTTTTGAAATTCGATGAACTTTTTT-CAAAACCGATGAACTTTTTTCAAAGTCGATGAACTTTTTTTTG
AATTTGATGAACTTTTTTCAAACACGATGAACTTTTTT------------------------------------------
----TAGAATTCGATGAACTTTTTTCAAAT--------------------CTGA--------------------TTAACT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTGAAATTTGATGAACTTTTTTCAAAACCGATGAACT
TTTTTCAATTTTGATGATTTTTTTTT----AAATTCGATGAA-CTTTTTTCAAAATCGATGAACTTTGTTTCT-AAAAAC
TGTAGTACATACTGTAGTAAACCGGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTAGCAGTTTTTGGCGAGAGGAAA
-AAAATGATCGAGCTGGGACCAGCGATCGAGCGGGAGCCAACGAAGGGAAGCGAAGAGGGAGCCATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCGCGAGCGCCACGATCGCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTCG----------
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>chr7D_4
TTTTTTCTGCAAAATGGATGAACATTTTTTGTTCAAATTCAATGACCTTTTTCCATTTTTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTGTAGAATTTGATGAATTTTTTTCAAATTCGATGAACTTTTTTTAAATCCGACGAACTTTTTTCAAATC
CGATGAACTTTTTT--------------------TATAATTCGATGAACTTTTTTCAAATCTGATGAACTTTTTT-CAAT
TCTGGTGAACTTTTTTGAAATTTGATGAACTTTTTT-CAAAACCGATGAACTTTTTTCAAAGTCGATG------------
-----------------------------AACTTTTTT------------------------------------------
----TAGAATTCGATGAACTTTTTTCAAAT--------------------CTGA--------------------TGAACT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTG---------------------------
------------------TTTTTTTT----AAATTCGATGAA-CTTTTTTCAAAATCGATGAATTATTTGCCTAAAAAAC
TGTAGTACATACTGTAGTAAACCGGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTAGCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAGCCAACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCGCGGGCGCCACGATCCCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTC-----------
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>chr1A_4
TTTTTTCTGCAAAATGGATGAACATTTTTTGTTCAAATTCAATGACCTTTTTCCATTTTAGATGAA--------------
-------TTTTTTTCGAATTTGATGAACTTTTTTCAAATTCGATGA--------------------TTTTTTTTCAAATC
TGATGAACTTTTTTAG---------------------AATTCGATGAACTTTTTTCAAATCTGATGAACTTTTTTTCAAT
TCTGGTGAACTTTTTTGAAATTCGATGAACTTCTTT-CAAAACCGATGAACTTTTTTCAAAGTTGATG------------
-----------------------------AACTTTTTTTTC-GTATTTGATGAA-ATTTTTTCAAAATCCGAT-GAACTT
TTTTAAGAATTCAATGAACTTTTTTCAAAT--------------------CTGA--------------------AGAACT
TTTTTGAAATTTGATGAACTTTTTTCAAAACCGATGAACTTTTTTCAGTTTTGATG------------------------
------------------ATTTTTTTTTAAAAAATCGATGAA-CTTTTTTCAAAATCGATGAACTATTTTTCT-AAAAAC
TGTAGTACATATTGTAGTAAACCGGTTGGGGTTTTCTAAGAAAATCAGTACCTAATGTAGCAGTTTTTGGCGAGA-GAAA
-AAAATGATCGAGCTGGGACCAGCGATCGAGCGAGAGCCAATGAAGGGAAGCGAAGAGGTAGCGATGGTTTAATGGGCCG
GC-----AGGAGGCGCGTGGGGGCACCACGATCGCTTGCTGGTGCTGAAGGCGCTGCCGAGGAGGACTCCGAT-------
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>chr7B_4
TTTTT-------------------------GTTCAAATTCAATGACCTTTTTCCATTTTTGATGAACTTTTTTCAAAGTC
GACAAACTTTTTTTCGAATTTGATGAACTTTTT---------------------CAAATCCGATGATTTTTTTTAGAATT
TGATGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTGATGAACTTTTTTTCAAT
TCTGGTGAACTTTTTTAAAATTCGGTGAACTT-TTT-CAAAACCGATGAACTTTTTTCAAAGTCGATG------------
-----------------------------AACTTTTTT--T-GAATTCGATGAAATTTTTTC--AAATCCGAT-AAACTT
TTTTTAGAATTCGGTGAACTTTTTTCAAAT--------------------CTGA--------------------TGAACT
TTTTTCAATTTTGGTGAACTGTTTTCAAAACCGATGAACTTTTTTCAATTTTAATG------------------------
------------------ATTTTTTTG--AAAATTCGATGAACTTTTTGTCAAAATTGATGAACTATTTTTCT-AAAAAC
TGTAGTACATACTGTAGTAAACCGGTTGAGTTTTTCTAAGAAAATCAGTACCTAATGTAGTAGTTTTTGGCGAGA-GAAA
GAAAATGATCGAGCTGGGACCAGCGATCGAGCGGGAGCCAACGAAGGGAAGCGAAGAGGGAGCGATGGTGTAATGGGCCG
GCCCAGAAGGAGGCGCGTGCGGGCGCCACGATCGCTTGCTG---------------------------------------
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>chrUn_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATCCGATGAAATTTTTACAAATCCGATGAACTTTTTTTATAAT
TCAAGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAGT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTT-GAATTTGTTGAA-CTTGTTC--AAATCCGAT-GAACTT
TTTTTAGAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAATCGATGAACTATTTGCCT-AAAAAC
TGTAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTCAATGGGCCG
GCCCAGAAGGAGGCGCGCG--GGCGCCACGATCGCTTGCTGGCGCTTAAGGCGCTGACGAGGAGGACTC-----------
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>chrUn_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATCCGATGAAATTTTTACAAATCCGATGAACTTTTTTTATAAT
TCAAGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAGT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTC-GAATTTGTTGAA-CTTGTTC--AAATCCGAT-GAACTT
TTTTTAGAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAATCGACGAACTATTTGCCT-AAAAAC
TATAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCG--GGCGCCACGATCGCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTC-----------
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>chrUn_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATCCGATGAAATTTTTACAAATCCGATGAACTTTTTTTATAAT
TCAAGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAGT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTC-GAATTTGTTGAA-CTTGTTC--AAATCCGAT-GAACTT
TTTTTAGAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAATCGACGAACTATTTGCCT-AAAAAC
TATAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCG--GGCGCCACGATCGCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTC-----------
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>chrUn_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATCCGATGAAATTTTTACAAATCCGATGAACTTTTTTTATAAT
TCAAGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAGT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTC-GAATTTGTTGAA-CTTGTTC--AAATCCGAT-GAACTT
TTTTTAGAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAACCGATGAACTATTTGCCT-AAAAAC
TATAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCG--GCCGCCACGATCGCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTC-----------
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>chrUn_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATCCGATGTAATTTTTACAAATCCGATGAACTTTTTTTATAAT
TCAAGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAGT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTT-GAATTTGTTGAA-CTTGTTC--AAATCCGAT-GAACTT
TTTTTAGAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAATCGCTGAACTATTTGCCT-AAAAAC
TGTAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTCAATGGGCCG
GCCCAGAAGGAGGCGCGCG--GGCGCCACGATCGCTTGCTGGCGCTTAAGGCGCTGACGAGGAGGACTC-----------
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>chr7A_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTTGAATTTGATGAACTTTTTTCAAATCCGATGAAATTTTTACAAATCCGATGAACTTTTTTTATAAT
TCAACAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAAT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTC-GAATTTGTTGAA-CTTGTTC--AAATCCGAT-GAACTT
TTTTTAGAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAATCGATGAACTATTTGCCT-AAAAAC
TGTAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCCCAGAAGGAGGCGCGCG--GGCGCCACGATCGCTTGCTGGCGCTGAAGGCGCTGACAAGGAGGACTC-----------
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>chr7A_16
----------------------------------------------------------TTGATGAACTTTTTTCAAAGTC
GATGAACTTTTTTTCGAATTTGATGAACTTTTTTCAAATCCGATGAAATTTTTACAAATCCGATGAAATTTTTTTATAAT
TCAAGAACTTTTTTCA---------------------AATTCGATGAACTTTTTTCAAATCTAATGAACTTTTTTTCAGT
TCTGGTGAACTTTTTTGAAATTCGATGAACTT-TTTTCAAAACCGATGAACTTTTTTCAAAGTCAATG------------
-----------------------------AACTTTTTTTTTCGAATTTGTTG-AACTTGTTC--AAATCCGATGAACCTT
TTTTTATAATTCGATGAACTTTTTTCAAATTCGATGAACTTTTTTCAAATCTGA--------------------TGAAAT
TTTTT-------------------TCAATTCTGGTGAACTTTTTTCAATTTTGATG------------------------
------------------ATTTTTTTT---AAATTCGATGAT-TTTTTTTGAAAATCGATGAACTATTTGCCT-AAAAAC
TATAGTACATACTGTAGTAAACCAGTTGGGTTTTTCTAAGAAAATCAGTACCTAATGTATCAGTTTTTGGCGAGA-GAAA
-AAAACGATCGAGCTGGGACCAGCGATCGAGCGGGAG--AACGAAGGGAAGCGAAGAGGGAGCGATGGTTTAATGGGCCG
GCTCAGAAGGAGGCGCGCG--GGCGCCACGATCGCTTGCTGGCGCTGAAGGCGCTGACGAGGAGGACTC-----------
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>chr5B_664
AAACG---------------------------------------------------------------------------
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AACACCACGTCACGGCCGACGCGGACGCTTGGTGCCCAGAGCAAACCAGCTCGGAATCGAAACCGCCTCCCCTAAGCAAA
GGCGCCTCCGGAGCTGACCGGATCGATCCAGAAGCCCAAACAAAGCGTGGCCAGCCGTCTCCATCACGTTCTTCTTGCAC
AATAAGAAAGGCGAGGCAAACCGTGTCCGCAACGGCGACGGCGAAACCCACCCGAAGC-----------TATAAAAGTAC
CGCGTCGTCCCGCCGTGATCACACCA---CACGCAACGCAAG----CCTTCGCACCCGAACGCAAGAAAGAGAGAGAGAG
AGAGAGAGAGAGCACACGCGGCGGGGGAAAAGCAGGAGCGAAGCGAGGGATCGGGAGGAACATCGGCGAGGCCATGGCGC
GGCGGGGCACGGAGGCGTTCCCGGACCTGGGCGCGCACTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTGCCCTTC
GACTGCAACGGCTGCGGCAAGGTGTTCTGCACGGAGCACCGCGCGTACGTTGACCACGGCTGCCCGCTCGCGGCCGACAA
CGGCCGCACCGTCGTCGTCTGCGAGGCCTGCGGCGACTCCATCGAGCGCGCCGGGTCGGACGAGACGGATGCGCAGATCC
TCGAGAAGCACGCGCGGTCGCGCCGGGGCTGCGACCCGGCCAGGAAGCTCAAGCCGCGATGCCCCGCGCGGCGCTGCAAG
GAGACACTCACCTTCTCCAACACGAGCCACTGCAAGGAGTGCGGGCAGAAGCTGTGCCTCAAGCACCGGTTCCCCGAGGA
CCACGGGTGCTCGCGCGTGTCGCCGGTGGGGGCCGCCGCCGCCGCGAGGAGGGCCGGCGACTGCGGCCGCGACGCGCAGA
AGACAAAGGACGGCGGTGGGTGGGCGCTGCCGCCGTTGATCCGGAATTTCAAT------TGATTACCCTGAAGCTGAAAT
TGTGGCTGGGATTTACGCAATTCATGGAACGTTTGTTTTCTCCGGTGTCATATTTTCAATTGTGCACA-TT---------
--TTGTTGTTGTTAAATGAAGAATCAAATTCAGTTTATTTTATGCTGCGGTTGGCTCGAAATGTCGAATTGAACTCATCT
ACAACGTGTCAAATCCTCAATGCTAAAAGGTTCTTTT-------------------------------------------
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>chr5A_670
--------------------------------------------------------------------------------
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AACACCACGTCACGGCCGACGCGGACGCGAGCAGAA----------CAGCTCGGAATCGAAACCGCCTCGCCTAAGCAAA
GGCGCCTCCAGAGCTGACCGGATCGATCCAGAAGCCCAAACAAAGCCATCG---------CCATCACGCTCTTCTTGCAC
AATAAGAAAGGCGAGGCAAACCGTGTCCGCATCGGCGACGGCGAAGCCCGCCCGAAGCTATAATAAAAGTATAAAAGTAC
CGCGTCGGCCCGCCGTGATCACACCACCACACGCAACGCAAGCCTTCCTTTGCACCCGAACGCAAGAAAAAGACAGAGAG
AGAGCGCGCGCGGCTT-------GGGGAAAAGCAGGAGGGAAGCGAGGGGATCGGAA----ACCGGCGAGGCGATGGCGC
GGCGGGGCACGGAGGCGTTCCCGGACCTGGGCGCGCACTGCGACAAGGAGGACTGCAACCAGCTCGACTTCCTGCCCTTC
GACTGCGACGGCTGCGGCAAGGTGTTCTGCGCCGAGCACCGCACGTACGTTGAGCACGGCTGCCCGCGCGCCGCCGACCA
GGGCCGCACCGTCGTCGTCTGCGAGGCCTGCGGCGACTCCATCGAGCGCGACGGGGCGGACAAGACGGACGCGGAGATCC
TCGACGCGCACGCGCGGTCGCGCCGGGGCTGCGACCCGGCCAGGAAGCGCAAGCCGCGCTGCCCCGCGCGCCGCTGCAAG
GAGACGCTCACCTTCTCCAACACCAGCCAGTGCAAGGATTGCGGGCAGAAGCTGTGCCTCAAGCACCGGTTCCCCACGGA
CCACGAGTGCTCGCGCGTGTCGCCGGCGGGGGCCGCCGCCGCCGCGAGGAGGGCCGGCGACTGCGGCCGCGACGCGCAGA
AGGCCAAGGACGGCGGTGGGTGGGCGCTGCCGCCGTTGGTCCGGAATTCCAAGATGTTCTGATTAGCCTGAGGCTGAAAT
TGTGGACGGAGGAGGC------CATGGAACGTTT-TTTTCTCCGGTGTCAAATTTTCAATTGTGCACA-TATTCTGTTGT
TGTTGTTGTTGTTAAATGAAGAATCAAATTCAATTTATTTT---------------------------------------
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>SNPs
--S---S------------------------------------------------------------------------S
------------------------------------------------------------S-------------------
----------------SSSSSSSSSSSSSSSSSS----------------------------------------------
-------------------------------------------S------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S---SSSSSSSSSSSSSSSSSSSS------
--------------------------------------------S-----------------------------------
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----------------------------------------------------------------------SSSSSSSSSS
----------------------------S--------------------------S----S-------------------
------------SSSSSSSSSSSSS-------------------------------------------------------
-----------------------S--------------------------------------------------------
-----------------------------------------------------------------------S---S--SS
--------------S-----------------------------------------------------------------
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----------------------------------------------S--------------------------S------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S------SS-------------------------------S------------S-----------
-------------------------S----------------------------S-------------------------
------------------S--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1192
--------------------------------------------------------------------------------
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----------------------------------------------------CACCCGAACGCAAGAAAGAC--------
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---------------------------------
>reverse_2318
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------CAA
AATAGTAACCGCCGCCG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
