>input_sequence_76471
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----------ATGGCGGGCGTGGGTCGTAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCA
TCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCCTCTTCGCCATCCTAGCCGGGGTCGTCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGGGACAGCCTGGCCACCTCCGCCTCGTCGGCGCTGGTGGCCTGGGCCATCACGGCGCTGGCCTTTGGCTTGG
CGTGCAAGGAGATCCATATCGGCGGGTACCGCGGGTGGCGCCTCCGGGTGCTCGAGGCGTTCGTCATCATCCTGGCCTTC
ACGCAGCTGCTCTACGTGCTCGCGCTGCACTCTGGCCTCTTTGGGAACCAGTTCGGTAACCATGCCGGTGGTG---GGTA
TCCGGCGGAGCATGCCTACGGCGCCGGCGTCG---GCGACCCGCATAA------CAAGGGCTTGGGCACCGGCGGCGTGG
CCAGGGTGTGA---------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G566500
CCACCTTTGAACATTCACTCGGATGTAATCCATCCACTCGGATGGAGGCAGCTCACTCGGATGCTTTACTGCCAGTCGGG
CATGCTCGCCAGCATTCGGACACAGGAGGCGAAAGGGTCGCACAATTTATTAGTACATCAGTTACCAGTAACACATGTAA
TTAACTCACTCCTTCAACTCCCACGTAGTCATAATGAGGGGCTGCACACTCTATATAAGCCGTCGTCCCCTAGATCCGAG
ACAAGGGTTCACAACCCTCTATAATCCAAACACCAGAGAAAGACAACCTCAAGGGCCCGAGGCATAGGGCTTTTGCCTCT
CCACGAGGGGCCCGAACTCATAAAATCCGAATGACACACCTATGCTGTAGCTAGGATCAAATCTTATTCGTACCCCTAAT
GTTCACTGTCAGGTTCGTTGCCTCGGCAAATAGTTTCACGTTGAATGACAAAACACGTTCGGAAAAAACATATGTGGACA
GTTTAAGAATCCCGTGTTGAAAATGCCCTAATATCCAATTACCTCGTCCACAAACCATCTACCATTCGACTCTTCCTTTC
CTTGCAACCAATCCCACTACGTAGCTAATCATCAGTTGACGGGGAGGCTTTCAATTCACGAACAGCAGTGACATTTCTAT
TTCTAGTGGCCAGGAA-----CGGAGGCTTAGTGTGGAACCATCCGTACGCTGCCAACGGCTACTCGAAGCAGCTAC---
-CGTGTAAAGCGGTAAAGCCCCATGCGCGCACGCGTCACGCCGCCCGTAAGCGGCGCATCACACGTGTCCCGCCCCTTAC
TCCCCCTG----CACACCTATATATTTATCCC---ACTACGCTAGCTTCACTCCACCACCTCATTCAGAAATCATCATA-
-CTGCATTCGATTCTTGCTTTGCAC----CCAATCCCAGTACGC----------AGCTAATCATCGGTCG------ACCA
AAGCCAATCCAGTGATTGACACAGCTCCATCCTCCATCTCCACCTCGACCAAGAAGAAGGTAGCAGTAGCAAATC-----
-------GCAATGGCGGGCGTGGGTCGTAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCA
TCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCCTCTTCGCCATCCTAGCCGGGGTCGTCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGGGACAGCCTGGCCACCTCCGCCTCGTCGGCGCTGGTGGCCTGGGCCATCACGGCGCTGGCCTTTGGCTTGG
CGTGCAAGGAGATCCATATCGGCGGGTACCGCGGGTGGCGCCTCCGGGTGCTCGAGGCGTTCGTCATCATCCTGGCCTTC
ACGCAGCTGCTCTACGTGCTCGCGCTGCACTCTGGCCTCTTTGGGAACCAGTTCGGTAACCATGCCGGTGGTG---GGTA
TCCGGCGGAGCATGCCTACGGCGCCGGCGTCG---GCGACCCGCATAA------CAAGGGCTTGGGCACCGGCGGCGTGG
CCAGGGTGTGAATAGGATAGGTCCGTCCGTCGTCTATCTCGGCGTGGTTGCCTTGGTCTGGATAGCAAGTTGTGGTATGT
ATAATGTATGTATGTGCCACGTCTGAGTGTACCAGTAGCGTTTCTTTCTTTATGTTAGCACTATCTAGCAGCTTTGCGTT
GTTCTTGTGATGTACTAGTCCGATCCATGGATGCTTCTTCTCTACCCGCTGCCGTCTGGCAATGTCTGCACGGACAAAGT
TCAATT---TAGTAGTACGATCAATCAATCTGCTTCTTCAGCTTGTGGTGTGCAAGTGCAGTGATGTCAACTGTATTCTC
TTCTCTTTTCT---GTCCGATTAATGTGCAGTGAAATTAGGGCAGTGCGTTCGGTTTGGATAAGTACATGCGGATGTGCA
GTGCAGTTTGGATGCGTACACGTATGGATGTGCGTGTCAGTGTCAGGTTTCAGGGCAGGTACATTGAGGATATATGGAGA
TAAATGCTCATAAAAATAAGTAGTGTGAGGTAACTATTAATTTTTTTCCCTCGACGCAAGCTACTATGTCACATG-CTGG
TCCTGTTATGCACTAGGCTAGACCCTCATGTGAGTATCATGTTTTAATTCAAATGAAATTTGAATTGAGGAATTTTCAAA
AGCCTCAGAAGACCTCTAAAAATAACCAACATTTAAATCTCATCAAATGAGTCCAAAG-------------------TGA
AAATATTGGTAAGAGATAAAATTCAAACCAATATTTTCGGAATCACAGAATTATTTATTTTTAGGCCTTTGACTTAAACC
AATGACATATTTGAGTTGAATTTATTTCTATTATATAAGAAATAAAGTTCAAATATTTTTGTAAGTTGTCTGTGACTTCG
GACTAGTTCCTGAGCTCACATACAATTTACAGAAAGTTTTAGAAGAATGATTTGATATTTTAAATCAAATCAAAACCAAT
TGCAGAAAATAGAAAAGAGAAAGAAAGAGAGAGAGA----------ACCCACCTGAACTTACCTGGCGCCCATCAACCGG
CCCAGCT
>chr5D_635
TTCTA---------------------------------------------------------------------------
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TTTTAGTGGCCGTTTGCCAAGCGGAGGCGAAGTGTGGAACCCTCCGCACGCTGCCGACGGCTACTCGAAGCAGCTAC---
-CGTGTAAAGCCCAGTGAG---------GCACGCGTCGCGCCACCCGTAAGCGGCGCATCACACGTGTCCCTCTTT----
------------CACACCTATATATTCATCCC---ACTAGCTATACTCCACTTCACCGCCTCATCCAGAAATCATCACA-
-TTCCATTCGCTTTTTGCTTGCACCAAATCCAATCCCAGCAGGT----------AGCTAGA------TCG------ACCA
AAGCCAATCCAGTGATCACGACCTCAACCAG------------------------GAAAA--------------------
GGCAGAAGCAATGGCGGGCGTGGGTCGTAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATCGTCA
TCGGGTTCGCCAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCGTCTTCGCCATCCTCGCCGGCGTCGTCGGCGCTGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGCGACAGCCTCGCCACCTCCGCCTCGTCGGCGCTCGTGGCGTGGGCGATTACCGCCTTGGCCTTTGGGCTGG
CGTGCAAGGAGATCCACATCGGCGGGTACCGCGGGTGGCGGCTCCGGGTGCTGGAGGCGTTCGTCATCATTCTGATGTTC
ACGCAGCTGCTGTACGTGCTCGCGCTCCACTCCGGCCTCTTCGGGAACCAGTTCGGTGGCAACCATGCTGGTG---GGTA
TCCGGCGGAGCATGCGTACGGCGCAGG---CG---GCGACCCGCACAACAAGGGCATGGGCATGGGCACCGGCGGCGTCG
CCAGGGTCTGA---------------------------------------------------------------------
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>chr5D_671
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-----------------------------------GGAACCACCAGTAGGCTGCCAACGGCTACTGGAAGCAACTACCGT
ACGTGTAAAGCCCA-TGCG---------GCACGTGTCCTCCCACCTGTAAGCGGCGCATCACGCGTGTCCCCTCACACGC
GCCCTCTAGCACCACACCTATCTATATATAATCCGA----CTACACTCCACTCGACCACCTCATCCAGAAATAATCACTT
TCTCCATTCGATTCTTCCTCTTGCTCTTGCCCTCAATCTCCTCGCTACGTCGTTAGCTAATCTAACCATCAG-TCCACCA
AAGCCAATCCACTGAGTGCGAGAGCTCCAT-CTCCATCTCGATCTCGACCAAGGAGAGGAAGCTAGCTAGCATAGCAACA
GGCAGTAGCAATGGCGGGCGTGGGTCGTAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATTGTCA
TCGGCTTCGCAAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGAGCCACC
TTCTACTTCCTCGTCTTTGCCATCCTCGCGGGCGTCGTCGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
ATGGCGCGGCGACAGCCTCGCCACCTCCGCCTCGTCCTCGCTCGTGGCATGGGCCATCACCGCCTTGGCGTTCGGGCTGG
CGTGCAAGGAGATCCACATCGGCGGGTACCGCGGGTGGCGCCTCAGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTC
ACGCAGCTGCTTTACGTGCTGGCGCTGCACTCCGGCCTCTTCGGGAACCAGTTGGGTGGCAACCATGCTGGCG---GGTA
CCCGGCGGAGCATGCGTACGGCGCAGG---CG---GCGACCCGCACAA------CAAGGGCATGGGCACCGGCGGCGTAG
CCAGGGTCTGAATCGGGTAG------------------------------------------------------------
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>chr4A_792
TCCCTC--------------------------------------------------------------------------
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-----CTG----CACACCTATATATTTATCCC---A----CTACACTCCACTTCACCACCTCATCCAGAAATCATCACA-
-TTCCATTTGATTCTTGCTTCCGCCAAATCCAATCCCAGCACGT----------AGCTAGA------TCAAGATCAACCA
AAGCGAATCCAGTGAGTGTCAGAGCTCCAT-TTCCATCTCCACCTCGACCAAGAAGAAAC--------------------
GGGAGCAGCAATGGCGGGCGTTGGGCGTAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCA
TAGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCGTCTTCGCCATCCTCGCCGGGGTCGTGGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGCGACAGCCTCGCCACCTCCGCGTCCTCCTCGCTGGTGGCCTGGGCGATCACCGCCTTGGCGTTCGGGCTGG
CGTGCAAGGAGATCCACATCGGCGGGTACCGAGGGTGGCGCCTCCGGGTGCTGGAGGCGTTCGTGATTGTTCTCATGTTC
ACGCAGCTGCTGTACGTGCTGGCGCTGCACTCGGGCCTCTTCGGGAACCAGTTCGGTGGTAACCATGGTGGTG---GGTA
TCCGGCGGAGCACGCGTACGGCGCAGG---CGTCGGCGACCCGCACAACAAGGGCATGGGCATGGGCACCGGCGGGGTCG
CCAGGGTCTGAGCTGATG----------------------------------------------------------ATCG
ATCTTGTATGCATACGTGGCGTTGGTGTGTGTTGTGTTCATACATGGTTGCAGACATGTACCATGTACTACC--------
---------ATGTACTAG------------------------------------------------TGCACGGATGAAGT
TTAATTCACTAGTAGTATGATCGACCAATTTGCTTCTTCAGTTTGTGGTGTGCAAGTGCAGTGATGTCAACTGTTTTATC
TTCACTTTTCTTTCGTCCAACTAATGTGTAGTGAAACTAGCGCAGTACGTTC----------------------------
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>chr5B_998
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-------GCAATGGCGGGCGTGGGTCGTAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACCTCATCGTCA
TCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCGTCTTCGCCATCCTAGCCGGGGTCGTTGGCGCCGCTTCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGGGACAGCCTCGCCACCTCTGCGTCCTCCTCGCTGGTGGCGTGGGCGGTCACCGCCTTGGCGTTCGGGCTGG
CGTGCAAGGAGATCCACATCGGCGGGTACCGCGGGTGGCGCCTCCGGGTGCTGGAGGCGTTCGTCATTATCCTGGCCTTC
ACGCAGCTGCTGTACGTGATAGCGCTGCACTCTGGCCTCTTCGGCAACCAGTTCGGTGGTAACCATGCTGGCG---GGTA
TCCGGCGGAGCACGCGTACGGCGC---------CGGCGACCCGCACAACAAGGGA------ATGGGCACCGGCGGCGTCG
CCAGGGTCTGAATCGGGTA-------------------------------------------------------------
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>chr4A_998
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-------GCAATGGCGGGCGTGGGTCGCAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCATCGTCA
TAGGGTTCGCGAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCGTCTTCGCCATCCTCGCCGGGGTCGTGGGCGCCGCATCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGCGACAGCCTCGCCACCTCCGCGTCCTCCTCGCTGGTGGCCTGGGCGATCACCGCCTTGGCGTTCGGGCTGG
CGTGCAAGGAGATCCACATCGGCGGGTACCGAGGGTGGCGCCTCCGGGTGCTGGAGGCGTTCGTCATCATCCTGGCCTTC
ACGCAGCTGCTCTACGTGCTGGCGCTGCACTCTGGGCTGTTTGGCAACCAGTTTGGTAACCATGCTGGTGGA------TA
CGGCGCGGAGCACGGCGGGTAT---GGCGCCG---GCGATCCGCACAA------TAAGGGCATGGGCACCGGCGGCGTCG
CCAGGGTCTGAAT-------------------------------------------------------------------
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>chr5D_998
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-------GCAATGGCGGGCGTGGGTCGCAACATGGTGGCGCCGCTGCTGGTGCTGAACCTCATCATGTACATCGTCGTCA
TCGGCTTCGCCAGCTGGAACCTCAACCACTTCATCAACGGCCTCACCAACCGCCCCGGCGTCGGCGGCAACGGCGCCACC
TTCTACTTCCTCGTCTTCGCCATCCTCGCCGGCGTAGTCGGCGCCGCGTCCAAGCTCGCCGGCGTGCACCACGTCCGCAC
CTGGCGCGGGGACAGCCTTGCCACCTCCGCCTCGTCAGCGCTGGTGGCCTGGGCGATTACCGCCTTGGCGTTCGGGCTGG
CGTGCAAGGAGATTCATATTGGTGGGTACCGCGGATGGCGCCTCAGGGTGCTGGAGGCGTTCGTGATCATTTTGATGTTC
ACGCAGCTGCTCTACGTGCTCGCGCTGCACTCCGGCCTCTTCGGGAACCAGTTTGGCAACCATGCTGGTGCTGGTGGGTA
CGGAGCCGAGCACGGCGCGTAT---GGCGCCG---GCGACCCGCACAA------CAAGGGCATGGGCACCGGCGGCGTCG
CGAGGGTGT-----------------------------------------------------------------------
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>chr7B_2077
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----------------------------------------------------------------TATGTCACATCCCTGG
TCCTGTTATGCACTAGGCTAGACCCTCATGTGAGCATCATGTTTTAATTCAAATGAAATTTGAATTGAGGAATTTTCAAA
AGCCTCAGAAGACCTCTAAAAATAACCAACATTTAAATCTCATCAAATGAGTCCAAAGAAATGTTCCTGTTACTCTGTGA
AAATATTGGTAAGAGGTAAAATTCAAACCAATATTTTTGGAATCACAGAATTATTTATTTTTGGGCCTTTGACTTAAACC
AATGACATATTTGAGTTGAATTTCTTTCTATTATATAAGAAATAAAGTTCAAATATTTTTGTAAGTTGCCTGTGACCTTG
GACTAGTTCCTGAGCTCACATACAATTTACAGAAAGTTTTAGAAAAATGATTTGATATTTTAAATCAAATCAAAACCAAT
TGCAAAAAATAGAAAACGGAAACAAGAAAAGAGAGAGACAGAGGAAACCCACCTGGACTTACCTGGCGCCCACCAACCGG
CCCAGCT
>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--S--------SSSSS------------SS--------------------------------------------------
-----------SSSSSSSSSSSSSSSSS---------S----S----------------------------S--S-SSS-
S---S----------------------------------SSSSSS--S----------------S------------S--
---S-----------------SSS---------------S---S------------------SSSSS-------------
------------------S-----------S----------------------------SSSSS--SSSSS-SSS-----
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------------S-------------------------------------------------------------------
------------------S-----------------------------------------S--SS----------SS---
----------------------------------------------------S---------------------------
-----------------------------------------------------------------S--------------
------------------------S----S---------------S---------------S----------------S-
-------------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SS
--SS------S--SS-SSS---SS-S----SSSSSSSS-S-SSS-SSS-SS-SSSSS-S--S--S--SS-S-SSSSSSSS
SSSSSSSSS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS----
-S---------------S----S-S----S-----------S--------------------------------S--S--
---S--------------S-S-------S-------S---S-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-----
----------------------------------S---------------------------------------------
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---------------S---------------------S------------------------S-----------------
-----------------------S--------------------------------------------S-------S-S-
--------------------------------------------S-----------------------------------
----S-----------SS----S--SS-S--------------------------S----------------S-------
-------
>forward_241
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-------------------------------------------------------------GTCGTCCCCTAGATCCGAG
A-------------------------------------------------------------------------------
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>reverse_2024
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-----------------------ATGGATGTGCGTGTCAGTGT-------------------------------------
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