>input_sequence_76425
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-----------------ATGGACAAGACCGGTGCCTTGTCTCTGACCCTGCTCTTCCTGTTCGTCGCCGGGGCCGAGGCC
GACAAGTGCAAGGACGTCCGAGCGACGTCCACTGCGGCCTGCCGTCAGGCGAGCACCAGCAAGCTCCTGTACGACA----
--TCTGCGTCCAGATGCTTGCGGGCTCACCGGATAGGGGTGACGTACGCAGCCACGCGCTCACTGCCGCCGGCGCAGTCC
TCGAGTCCTACGCGGCCACTGGCGTGGCAATCAATAAGATGCTGCGGTCGGGATCCGACCGCAT-------------GAA
GGAGGCTATGTTATTCTGTACACAGTACTACTACCATGCGCAAATTCGCTTCAAGGAGATCAAGACATTGCTGGAGGACA
ACTCCGATTGCGACCTCAAGACATTCGAGGCAGTGTACTCGGACGCCATCATGCGCCTCGACGACTGCCGTAGCAAGATG
ATTCCCATCCAAGGCGAGTCGCCGTCCATGTACGGCATGATCTACACCGATGGCCACCGGAGCTTTTTGGCTTTCCGGCT
GGGCCTGCTGGTTGCTAACCCCTAG-------------------------------------------------------
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>chr4B_1_TraesCS4B01G022200
GACTTTTTTTTTCATTAAGTCTAAGCTAATGTTTATGAAATGTGGAGCATAAGAACAATTCCTTAATGGGAATAGGATTC
TATTCATACAAACCAAATGCCTCTAAAGGATTTTTTTTATATAAAAATCCTATATATCCTCTGAAAATCCTACAAAATTC
CTCCAACCCAAAGGAGGCCTAAAGGGGGATGCGTAGGTAGTCATTGTTGGTACGCAGTCAGTAATGTAAAAATAACTTAA
AGCCAACTGTTGAATCAATTTTAAAATCAAGTCATTAATGCAGTAAAATTAAATGGAAATGCATGTGTAGTCGTTTTTTA
ATGTTATACGTATGCAGTCGTCGTTGGGACGCAACCATTATGCAAAAATAATTTGAAAATCAAGCGCTAAATTAGTTTGA
AAATCAACCCATTAATGTAACTAACTTAAAGCGAAATATGTACGTAATCGTTGTTGCGATGCAGTCATTAATGCAAAAAA
AAAATGAAACCAAGCATAAATCAATTTGAAAATCAAGCCATTAATG----------------------------------
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----------CAATTAAATTGAAGAAAAATATGTATGTAGCCGTTGTTGGGACGCAATCATGAATCTGTACTATTATAGG
GAATGTGCACA---------------------------------------------------------------------
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--------------TAGTTGTTCTTGGGACGCAGTCATTAATGCGAAAA-AAATTGAAAATCAAGCATTGAATCAATTTG
AAAATCAAGCTATTAATGCAGTTAAATTAAAGGGAAACGTGTATGTAGTCGTTGTTGGGACGCAGACATTACTCTACTAT
TAAATCACTACTGTTAAAGAGAATGCGTACATAGTCATTGTTGGTAATCAGCCATTAATGTAAAAAAAAAAAGGAAATTG
TCATCCTTAGTCAGCAGCAGGACACCATGTCGTTGGATGAAAGACGGACGGTAGATGCAAGTCTTTGCCGTCTTTATATA
CAGCACCCTA----CACAGTTCACCTCGTCCTGCCCGTAGTAGTACATACACAGTAT-----CCTTCCCAGTTGCACCAG
TACTTCCAAGATTCCCCATGGACAAGACCGGTGCCTTGTCTCTGACCCTGCTCTTCCTGTTCGTCGCCGGGGCCGAGGCC
GACAAGTGCAAGGACGTCCGAGCGACGTCCACTGCGGCCTGCCGTCAGGCGAGCACCAGCAAGCTCCTGTACGACA----
--TCTGCGTCCAGATGCTTGCGGGCTCACCGGATAGGGGTGACGTACGCAGCCACGCGCTCACTGCCGCCGGCGCAGTCC
TCGAGTCCTACGCGGCCACTGGCGTGGCAATCAATAAGATGCTGCGGTCGGGATCCGACCGCAT-------------GAA
GGAGGCTATGTTATTCTGTACACAGTACTACTACCATGCGCAAATTCGCTTCAAGGAGATCAAGACATTGCTGGAGGACA
ACTCCGATTGCGACCTCAAGACATTCGAGGCAGTGTACTCGGACGCCATCATGCGCCTCGACGACTGCCGTAGCAAGATG
ATTCCCATCCAAGGCGAGTCGCCGTCCATGTACGGCATGATCTACACCGATGGCCACCGGAGCTTTTTGGCTTTCCGGCT
GGGCCTGCTGGTTGCTAACCCCTAGGTCGATTTGTCGCACTCGCACCCCTGTTCTTGGGGCTCTCCGTAGTTACTCGAGC
TCACATTTCTTGGAGCCATCTGTAGTGACACCCCACTCCTTGGGGCTACATATTTATGAATAAAAGGTGGTTTGAGCAGC
AACAAAAATTGATTCCCAGTGTGTCTCCTCTCCATAAATTTTTATTACTGTATTAGGCTTTCTTTGTTTTTGTTTTTTTT
TTGCGGAAAGGCTTTCTTTGGTTTATAAGATAAGAAAATCATAGGAATAAAAAACTCACAGAAAATGAGATGATATGTAT
CTCAAATCTTATGAATAGGAATAGGAAAGTAGACGTTCTTCGGTTCACATCATAAAAAGAAAA--TCATTAAGTCCAAGG
TAATGTTTATTTTTCTATGAAATGTGAAGAATTCCTTCATAGG---------AATAGAATTCTATTCCTGCACACCAAAG
GGCTCTAAATGAATTTTTTTTTATATAGAAATGATATCCTCTGAAGATCCTACATAATTCCTCCAAACCAAAGGAGGCCT
AAAGGGGAAATGCGTAGGTAGTCGTTGTTGGGACGCAGTCGTTACTGTCAAA-TAATTTAAAAGCCAAGCGTTGGATCAA
TTTAAAAATCAAACCATAAATGCAGT-AAATTAAAGAGAAATGCCTACATAGTTG-----TTTTTAATATTATGCGTATG
TAGTCGTTGTTGGGACGCAGCCATTGGTGCAAAAATCATTTGAAAACCCATCGCTAAATCAATCTC--------------
-------------------------------------------AAAATCAAGCCACTAATGTAATTGAATTAAAGTGAAA
TACATATATAGTCATTATTGGCGTGAAAGCACGAGGTCGTTGATGGAACCGAATCTGAACGAGGCCAGCCCACCACACTA
ATGCCTTGTTTCACGGGATCGTTTCAATTCTTCTGCTGCTGCTGCTTCTTGGCCAAAAGAGAAGAAAGTCAAATTCTTGT
GCAGAGGCAGGAACGTTAACGGAGCCGTCAAACTAAACCGGGCAGCAGGCCAAAGCAAAA
>chr4A_462
CCATGCGCGGATCTGCTTCAAGGACATCAAGACGTTGCTGGAGGACAACTCCGACTGCGACCTCCAGATATTCGAGCAAG
GGTACTCGGACGCCACGGTGAGAGTCGACGACTGCCGCAACAAGACGATTCCCATCCAAGGCGAGTCAACGTCCACGTAC
GGCAAGGCAACACAGACGGCCACCAGAGCTTTCTGGCTTTCCGGCTGGGCCTGCTGGTTGCCAACCCCTAGGTCGATCCA
TCGCACTCGCACCCTAGTTCTTCGGGCACTCCGTAGTTACTCGCACCCACATTCCTTGGAGCCATATATAGTTTTTTTGG
ACGATAACAGGAGAGCTGTTATATTTGAAGAAGACGGTACGAGGACCCGAACTGCTTGGTTATTAAAGGGAAATCGGGCG
AAAACCTAAACAACGGCAAGCCACATCTAGTAACCTAGGCCTAAAACACCACAATACATATAAGACGTTCGCAAGGCTGA
CAAAGTCTGCCAAGAGCCTATTCATCAACCGCGACGACGCTGGAGAGGAACGACATGCCCAAAGGAGGCGGACATATGCA
GCTCCGATCCCACAAGAACCGGCCAACATGGCTCATCTGACGCCTCGCATGTGAAAAGTGCTCAAGCTGCCCAACCTCGA
CGACCGACGTGCATCCGCTCCATCCACAAGCCACAAGCCTGAGCAAATCCAACTCCAAAACACCATCAAGAGTGAGCTCT
AAGCTTCAACATTGCCCGATCCGGAAGACCATATCTAGGGTTTCCCCTGGAGCATGGTAGAAAGGAGGATGAGGACTGCA
CATCGACGCCTCCAACAAGGATACGACGCCTGAAGGCGCCGCCGTCGATGACTCCGGACGCAGCCGAAGTACAGTTTTCA
CTAACAACCACAACCATCCAAAGCCAAGGATCGGCCGGCCCATCTGACCAACCACCTCCGCGTGCCACGCCGACCGTCGG
ACCTCCTGTCGCCAGCGCCGCGCCATCAACAGGAGCAGCAGAGCCGGCGGCCCCACCATGTTGGCCGGTGCACGTGCACC
CAGCCGCCCGCACCGCCGCCCACAGCTCCATGCCTCCGCCGCGTCGCCGCGTAGATCTAGAGCACATCTCGCTGTGGCCC
GGCCGGGCGCCGGCACCCAAGCCACAATGGTGCAACGCGCCGCGTGTTGGGGAACGTAGCAGAATTTTAAAATTTTCTAC
GCATCACCAAGATCAATCTATGGAGTCATCTAGCAACGAGGGATAGAGGAGTGCATCTACATACCCTTGTAGATCGTGCG
CGGAAGCGTTCAAGAGAACGGGGTTGATGGAGTCGTACTCGACGTGATCCAAATCACCGATGACCTAGTGCCGAACGGAC
GGCACCTCCGCGTTCAACACACGTATGGTTGGAAGACGTCTCCTCCTTCTTGATCCAGCAAGGGGGAAGGAGAGGTTGAT
GAAGATCCAGCAGCACGACGGCATGGTCCCGGCAGCATGATCCCGGCAGGGCTTCACCAAGCGCAAGCGGGGAGGAGAGG
TATCACGGAGGGAGAGGGAGGCGCCAAGAGCAAGGGGATGCGGCTGCCCTCCCTCCCTCCTCTTTATATAGGGGCCTTGG
GGGCGCCGGCCCTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTAGGCGCAGGGGAGGCCCAAGGGGGGCGCACCAGCCCACTAGGGG
CTGGTTCCCTCCCAATTCAGCCCATGGGGCCCTCCGGGATGGGTGGCCCCACCGGGTGGACCCCCGGGACCCTTTCGGTG
GTCCCGGTACAATACCGGCGACCCCCGAAACCTTCCCGATGGCCGAAATTGTACTTCCTATATATAAATCTTTACCTCCG
GACCATTCCGGAACTCCTCGTGACGTCCTGGATCTCATCCGGGACTCTGAACAACTTTCGGATTACTGCATACTAATATC
TCTACAACCCTAGCGTCACCGAACCTTAAGTGTGTAGACCCTACGGGTTCGGGAAACATGCAGACATGACCGAGACGCCT
CTCCGGTCAATAACCAACAGCGGGATCTGGATACCCATGTTCGCTCCCACATGCTCCACGATGATCTCATCGGATGAACC
ACGATGTCGAGGATTCAATCAATCCGTATACAATTCCCTTTGTCGATCGGTACGTTACTTGCCCGAGACTCGATCGTCGG
TATCCCAATACCTTGTTCAATCTCGTTACCGGCAAGTCACTTTACTCGTGACGTAATGCATGATCCCGTGATCAACCACT
TGGTCACATTGAGCTCATTATGATGATGCATTACCGAGTGGGCCTAGAGATACCTCTCTGTCACACGGAGTGACAAATCC
CAGTCTCGATTCGTGCCAACCCAACAGACACTTTCGGAGGTACCTGTAGTGTACCTTTATAGTCACCCAGTTACGTTGTG
ACGTTTGGCACACCCAAGGCACTCCTACAGTATCCGGGAGTTGCACAATCTCATGGTCTAAGGAAATGATACTTGACATT
CGGAAAAGCTACAGCAAACGAACTACACGATCTTTGAGCTATGCTTAGGATTGGGTCTTGTCCATCACATCATTCTCCTA
ATGATGTGATCCCGTTATCAATGACATCCAATGTCCATAGTCAGGAAACCATGACTATCTTTTAATCAACGAGCTAGTCA
ACTAGAGGCTCACTAGGGACATGTTGTGGTCTATGTATTCACACATGTATTACGATTTCCGGATAACACAATTATAGCAT
GAACAATAGCCAATTATCATGAACAAAGAAATATAATAATAACCATTTTATTATTGCCTCTAGGGCATATTTCCAACACC
GCGACCACCGGGCCCTTAGGGACGCCGCGCGGAGCCCATGCCGCGGCACTACCGCCTGCAGCTCCATGCCACCGCCGCGT
AGATTTGGGGCGCACCTCGCTGCGGTCCGGCGCCCCGCGCCCTAAGCTGCCCAGCCGCCACCTTCCTTGGGCCGTCCCGA
GCTTCGCTGACATGCGCCCTCCGGCGGCGGCGGGACGGGAAGGGGAGTGGGGAAGCTGCGGCGGCTAGAGTTTTCTCCCT
CGAGCCGCCAGGGAGGCGACGCGGGGGTCTGGTCTGAGAGGTTGAGCCATCTGTAGTGACACCCCATTCCTTGGGGCTAC
ATATTTATGGATAAAAGGTGGTTTAAGAAGCACCAAAATCATAGGACTGGGAAAATCACAGGAAATGAAATAACATGTAT
CTCAAATCTTATGAATAGGAATAGGAAAATAGACGCTCTTTGGTTCATATCATAAGTTTTTTTCTTCATTAAGTCTAGGC
TAATATTTATTTTCCTATGAAATGTGGAGGATAAGAAGAATTCCTCCATAGGAATAAGATTCTATTCCTACAAACCAAAG
GCTTTAAAACATTTTTTTGTATAGAAATCATATGCTCTTAAAAATACTACAGAATTCCTTCGAACCAAAGGAGGCCTAAC
GGGGAATGCTTAGGTAGTCGTTGTTGGGACGCAGTCATTATTGTGAAAATAAATTTAAAGCTAAGCATTGAATTGATATA
AAAATCATGTCATTAATGCAATAATATTAAAGAGAAATGCCTATGTTGTCGGGTTTTTTAATATTAT-------------
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------------------------------------------------------------------------------CC
GGCAAGTTCAAGGACGTCCGAGCGACGTCCACTGTGGCCTGCCGCTAGGCGAGCACCAGCAAGCTCCTGTACGAGTACGA
CCTCTGTGTCCAGATGCTTACGGGTTCGTCGGACAGCGGTGACGTACGCAGCCATGCACTCGCCGCCGCGGATGCGGTCC
TCAAGTCCTACTCGGCCACCGGCGTGGCGATCGACGAGACGCAGCGGTCGGCATCCCACCGGCCACCGCATGAGGGAGAG
GGAGGCCCTGCTATCCTGCACGCAGTACTACTTCCAGGCGCGCATTTGCTTCGTGGACATCAAGACGTTGCTAGAGGACA
ACTCCAACTGCGACCTCGAGACATTCGAGCAAGTGTACTCGGACGCCA--------------------------------
-------TCCAAGGCGAGCCACCGTCCACGTACCACATGGTCAACACCAACGGCCATCGGAGCTTTCTGACTTTTCGGCG
GGGCCTGTTAGTTGCCAGCCCGTAGCCTC---------------------------------------------------
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---------------CTTTGGTTCATAGGATAGAAAAATCATAGAAATAGAAAAGTCATGCGAAATGAAATGACATGTAT
CTTAAATCTTATAAATAGGAATG----AGTAGACGCTCTTTGGTTCAGATTATAAGATTTTTTTTTCATTACGTCTAGGC
TAATGTTTATTTTTTTATGAAATATGGATAATAATAAGAATTTCTCTATGAAAATAGGATTCTATTCCTACAAACCAAAG
GGCTCTAAAGGATTATATCATTTGAAA-------------------ATCCTATAGAATTCCTCCAAACCAAAGGAGGACT
AAAGGGG-AATGCATAGGTAGTCGTTGTCGGAACGCAGTTATTAATGTAAAAGTAATTTAAAAGCCAAGTGTTGAATCAG
TTTTAAAATCAGGTCATTAGTGCAATAAAATTAAACAGAAATGCCTATGTACTAGTCATTTTCTTAATATTATACGTATG
TAGTCGTCCTTGGGACACAACCATTAATGCAAAAATAATTTGAAAACCAACCGCAAAATCAGTTTGAAAAACAACCAGTC
ATTAATGCAAAAATAATTTAAAACCAAGCGTTGAATCAATTTGAAAATCAAGTCATTAATGCAATTAAATTGAAGAAAAA
TATGTATGCACTATACTAGTTGTTGTTGGGATGTAATCATTAATCTCTACTATTAAAGATAATGCGTATGTAATTGTTGT
TGGGACGTAATCATTAAT--------------------------------------------------------------
------------------------------------------------------------
>chr4A_901
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--------------------------------------------------------------------CGTCTTTATATA
CAGTAGGTACACTCCACATTTCACCTTGTCCTGCCCGTAGCAGTACATACACAGTACAGCACCCTTCCCAGTCGCACTAG
TACTTCCAAGATTCCCCATGGGCAAGACCGGTGCCTTGTCTCTGACCCTGCTCGTCATGTTCGTCGCCGGGGCCGAGGCC
GGCAAGTGCAAGGACGTTCGGGCGACGTCCACTGCGGCCTGCCGTCAGGCGAGCACCAGCAAGCTCCTGTACGACA----
--TCTGCGTCCAGATGCTTGAGGGTTCGCCGGACAGCGGTGACGTACGCAGCCACGCGCTCGCTGCCGCCGACGCGGTCC
TCAAGTCCTACA-------------------CGACGAGTCGCTGCGGTCGGGATCCGACCGCAT-------------GAA
GGAGGCCATGTTATTGTGCACACAGTACTACTACCATGCGCAAATTCGCTTCAAGGAGATCAAGACATTGCTGGAGGACA
ACTCCGACTGCGACCTCAAGACATTCGAGCAAG-----------------------------------------------
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---------------------TTTATAAGATAAGAAAATCATAAAAACAAAAAAGTCACAGAAAATGAGATGCCATGTAT
CTCAAATCTTATGAATAGGAATAGCAAAGTAGACGTTCTTCGGTTCACATCATAAAAAAAAAAATCA-------------
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>SNPs
SSS-SSSSSSS--SSSSSSSSSS-SS-S-S-SSSS--SSSSSS-SSSSS-SS--SSSSSS---SS-SSSSSSSSS-SSSS
SS-S-SSSS-SS---SSSSSSSSSSSSSSSSS-SSSSS-SSS-S-SSSSSSSS--SSSSSSS--SSSSS-SS-S-SS-S-
SS-S-SS-S-S-SSSSSSSSS-SSS-S-S-SSS-S-S-SSS-SSSSSS-SSSSSSS--SSSS--SSSSS-SS-SSS-SS-
SSS--SSS-SSSSS-SSS-S--SSSSSSSSSSSSSSSSSSSS-S-SSSSS-SSSSSSSSS--SSSSSSSSSSS-----SS
-S-S--SSS-S-SSSSSSSSSSS--S-S-SSSS--SS-SSSSSS-SSSS--S-SSSSSS-S-SSSSSSSS-SSSSSSSSS
---S-SSSSSSSSSSSSS-S-S-SS-SS-SSSSSSSSSSSSSSSS-SS-SSSSS-S-SSSSS--S-S--SSSSSSSSSS-
S---SSSSS-----SSSSS--SS--SSSSSSSSSSSS-SS-SS-SS----------------------------------
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----------------SSS----S---S-S--S--SSS-SSSSSSS--SSSSSSSSSSSS-SSSS-SSSSS-SSS-S-SS
-SSSSSS-SSS---------------------------------------------------------------------
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------------------S---S-----------------S--S-----------S---SSS-----------SS--S-S
-------S-SS---------S-S-S-------S----S-SS-----S----SSS--SSS-SSSSS-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
---S-SSSSS--------S-------S-------------S---------------S---------------S----S--
---------------------S-------------------------------S--S-----------------------
-S------------------------------------------------------------------------------
------------------------S--S-----S--S------------------------S---------S---S----
--S--------S-------S--------S---S-SS---S----------------------------------------
------S-----------S-------------------------------------------------------------
-------S---------------------SS-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-----------S-S-------S----SS----S--S-----S-S-----S---------S--S----S----S
-------S-S-----S-S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------S---------S------------------S------
------------------------S---------------------------------S------------S---S-S-S
--------------S--------S--S-S---SSSSSS-SSSS--------------S-----------S--S-------
---------S--S-S-S-SS--SS-S-SSSSSSSSSSSSSSSSSSS------S-S----------------------S--
-------S-----S--------------S--S-------SS---S---S--------------------S----S----S
---S-------SSS---S-S----S----------S-----------SS--S-S--------S----------S------
-------SS-------S--S-----SS---------S-----------S-S---S------S-S-S--------------
----------------------------------------------------S--S-----S----S----S---SS---
--SS---SS-S-SSSSSSSSSSS--SSS-S-S-SSS--S--S--SSSSS-S-S-SSSS-SS-S--SSSSSS-SSSSSSSS
SS-SSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_201
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---------------------AAGGGGGATGCGTAGGTAGT---------------------------------------
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>reverse_4617
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--------------------------------------------------------CCGGAGCTTTTTGGCTTTCC----
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>forward_4533
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---------------------------------TGTACTCGGACGCCATCATG---------------------------
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>reverse_5683
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--AGAGGCAGGAACGTTAACGG--------------------------------------
