>input_sequence_76421
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--------------------------------------------------------------------------ATGCAC
CGCCATTTTGGCCGGCTCCTCTCCAGCGGCGACGGGGCGGATGTCACCTTCGAGGTCGGAGGCGAGACGTTTGCGGCGCA
CAGGTGTGTGCTTGCCGCCCGGTCCTCGGTGTTCATGGCGGAGCTGTTTGGGCCG---ATGAAGGAGAACACCGA---TG
CTTCTGTACGCATCACTGACATGGAGGCTAAAGTGTTCAAGGCCATGCTCCACTTCATCTACACAGACTCTCTGCCGCCC
ATGGACGATGAGCAGGAGCTGGTGGTCATGGCCCAGCATTTGCTTGTTGCGGCTGACACGTATAACCTCGAGAGGCTCAA
GTTGCTCTGCGTGGAGAAGCTCTGCAATCACATGGACGCAAGCACCGCTGCGACTACGCTGGCATTGGCTGAGCAGCATT
CCTGTTGCGGGCTCAAGGACTTGTGCTTCAAGTTCCTTGCGTCACCTGGAAATATGCTCAAGGCCGTTGTGGCGAACGAC
GGCTTCGAGCATGTGAGGAGCAGCTGCCCGTCTGTTCTCAAAGAGCTCGTTGCCAAACTTGCACCTTGA-----------
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>chr4A_1_TraesCS4A01G411800
GCGAGCACAATGCAGTATGGTGCTTTGCAGCCGCATCATGCATGTAAAGAGAGAACAGTGTGTG---ATAGCACACGAGC
GTAATGCAGTATGGTGCTTTGA-AGCCGCGTCCCCGGCCGGCTGTGCTACACGCCGGCGAGTAG---TATTTGCTATGCA
TATGCACCCAGTTTCAGAAAAAAATACAGTTATTGCGTATGACTGCACGCGCGTCTCCTCGGCAAAGGTACCCGCCAGCG
ATTTCACGCGCACTCGATCGGCGCGCGCGGGAACACGCCCCGGTACCGCATGCGCTGGCCGACTGCTCGTGTGACGCGCG
CGACTAATGCAGGCGAAGTAAGCGC---------CGTCCTAACTCCGTGCTTTCCAGCGACCTCGCAAGCTCTATA----
-------AGAACCTCAGAAGCTCCCACACCCGCTTCTCATTCTTCCCAGCGACGAAATAGCTCGATC---CCGTTCTTCC
CAGGC-TCGCCATGTCCGGCTCCAGCCTGTCCTC---CGGCGGCGGCATGCCGTGGCAGACCGCTTCGGCCATCGTTGCC
CGGCCATTGCCCGTCTCCGGCTCGCACGTCCTCAAGATCGACGGCTACTCCCGCACCAAGGGCCTCGTCAACGGCAAAGG
TGTCTCGTCCGAGACGTTCGTCGTTGGGCGCCATCGCTGGTACATGAGGTACTTCCCTGACGGTCACTCGGCAGGACAAG
CTGGTTGGATATCTATCTACCTCTATCTTGTCCACACTGATAGTGTCGATGATCAAGTCCACGCCCGGTGCAAGATAAGC
TTGCTCGACCAGGACGGGGAGCCGGTGCCGGCGCACGGCACGGACAGCCAAACATGCTACACCTTCTCCAGCAATACAGG
GCCATGGGGCTCTCCTCAGCTCATCGCCAGGAAGGACTTGGAGGAGTCACTTTACCTCAAGGATGATGTTTTCAGTGTCA
AGTGCAAGATCACCGTGCCTAGGGAGATCTTCACGGAGCCCATCTCGCTGCTGGTCGCCGCGCCACCGTCCGACATGCAC
CGCCATTTTGGCCGGCTCCTCTCCAGCGGCGACGGGGCGGATGTCACCTTCGAGGTCGGAGGCGAGACGTTTGCGGCGCA
CAGGTGTGTGCTTGCCGCCCGGTCCTCGGTGTTCATGGCGGAGCTGTTTGGGCCG---ATGAAGGAGAACACCGA---TG
CTTCTGTACGCATCACTGACATGGAGGCTAAAGTGTTCAAGGCCATGCTCCACTTCATCTACACAGACTCTCTGCCGCCC
ATGGACGATGAGCAGGAGCTGGTGGTCATGGCCCAGCATTTGCTTGTTGCGGCTGACACGTATAACCTCGAGAGGCTCAA
GTTGCTCTGCGTGGAGAAGCTCTGCAATCACATGGACGCAAGCACCGCTGCGACTACGCTGGCATTGGCTGAGCAGCATT
CCTGTTGCGGGCTCAAGGACTTGTGCTTCAAGTTCCTTGCGTCACCTGGAAATATGCTCAAGGCCGTTGTGGCGAACGAC
GGCTTCGAGCATGTGAGGAGCAGCTGCCCGTCTGTTCTCAAAGAGCTCGTTGCCAAACTTGCACCTTGATTTGAGACACC
GCGCGCCCTCTTTGGCTTGATTATCCTGCAATTTCATGTAGTACTGAATGATTTGAGATGCCGCCTTCTTTCGGTTGATT
ATCCTGCAATTTCATGTCGCTAAAATTGAGCTTGTTACTGGATCTCAAGGAGCTCGTTACTCAATCATGTACTATCAGCA
ATTTATGTACTACGTACTTCTATTTGAGTTGCCTTTTCATGGTAGATTATCAGTGCCAAAATTATCCGGTGCTACCCAAA
GATCCAACTTAATATATATTTACTTTGAAAAAAATAAAGGAAGTACCTAGAACTCATCTAAATGAGATATAATTTGGTCT
CATTCACCTGGAAATCAAGAACAAAAACAACCCACGTCAGCACACATGCATCTTATAGCATCACATCCAATGGCTATAAA
AGGTGAATGAGACCAAATTATATCTCATCTGGATGAGTTCTAGCAAAACTGAAAAATAAAACACCCCAACCCCACCCCGG
TGTGAGATTTTTCTGTGGGCCCACCCCTCATTTTCCGTTCAACCCCCACATCATCCCATAATAAAATTTGCCTGTGTGTA
CCATTGCTCTACACTGCATGGTTTTGCCTGAAAATCCTACATCCACGTGATGTCAGGGCATCTATGACGCCGACCCTCAA
ATCGCCCACAACCGTTCGGACTGTGCTGTTCGAACAACATAAGTTATCGGGCATGTATCGGCCCGCAGGGTGGTCTGGAT
ATACTTTCTTAGGATCACTCCCAAGTCCGCTTTTGACCACACTAGCCCACCCAACCCTCCTCCTGCGCTTTCCATCAAAC
GCACCACGCCACTTTCATGCCGGCCCAGAGCATGCAATAGCTGGCATTAATGTCGTGAATTGACCAGGTGGGAGAGCAGC
GCTAACGGACATCGTCGATTCAATGCTGACACCATGTCTTGAGGAACCAACTCCGGCCGCCGGTGACACACAAAGCTGCA
CTTTACCTCCCCAAGCACTGGCCCCCTTT
>chr4D_12
-----------GCAGTATGGTGCTTTGCAGCCGTGTCATGCATGTAAAGAGAGAACAATGTGTGATCATAGCACACGAGC
ATAATGCAGTATGGTGCTTTTGCAGCCGCGTCCCCGGCCGGCTGTGCTACACGCCGGCGAGTAGTACTATTTGCCATGCA
TATGCACCCGGTTTCAGAAAA-AATACAGTTATTGGGTA--ACTGCACGCGCGTCTCCTCGGCAAAGGTACCCGCCAGCG
ATTTCACGCGCACTCGATCGCCGCGCGCGGGAACGCGCCCCGGTACTGCATGCGCTGGCCGACTGCTCGTGTGATGCGCG
CGATTAATGCAGGCCAAGCAAGCGT---------CGTCCTACCTCCGTGCTTTCCAGCGACCTCGCAAGCTCTATATAAG
AAGTTTAAGAACCTCACAAGCTCCCACACCCGTTTGTCATTCTTCCCAGCGACGAAATCACTCGATCTGTCCGTTCTTCC
CAGGC-TCGCCATGTCCGGCTCCCCCCTGTCCTC---CGGCGGTGGCATGCCGTGGAAGACCGCTTCGGCCATCGTTGCG
CGGCCATTGCCCGTCTCCGGCTCGCACGTCCTCAAGATCGACGGCTGCTCCCGCACCAAGGGCCTCGTCAACGGCTATGG
TGTCTCGTCCGAGAAGTTCGTCGTTGGGCGCCATCGCTGGTACATGAGGTACTTCCCTGACGGTCACTCGGCAGGCCAAG
CTGGTTGGATATCTATCTACCTCCATCTTGTTCCCGCTGATAGTGTCGATGATCAAGTCCACGCCCGGTGCAAGATCAGC
TTGCTGGACCAGGACGGGGAGCCGGTGCCGTCGCGCGTCACGGACAGCCAAACATGCTACACCTTCTCCAGCAATACAGG
GCCATGGGGTTCTCCTCAGCTCATCACCAGGAAGGACTTGGAGGAGTCACTTTACCTCAAGGATGATGTTTTCAGTGTCA
AGTGCGAGATCACCGTGCCGAGGGAGATCTTCACGGAGCCCATCTCGCTGCTGGTCGCCGCGCCGCCGTCCGACATGCAC
CGCCACTTTGGCCGGCTCCTCTCCAGCGGCGACGGGGCGGATGTCACCTTCGAGGTCGGAGGCGAGACGTTCGCGGCGCA
CAGGTGCGTGCTCGCCGCTCGGTCGTCGGTGTTCATGGCGGAGCTGTTTGGGCCG---ATGAAGGAGAACACCGA---TG
CTTCTGTACCCATCGCTGACATGGAGGCTAAAGTGTTCAAGGCCATGCTCCACTTCATCTACACAGACTCTCTGCCGCCC
ATGGACGATGAGCAGGAGGTGGTGGTCATGGCTCAGCATTTGCTTGTTGCCGCTGACACGTATAACCTCGAGAGGCTCAA
GTTGCTCTGCGTAGAGAAGCTCTGCAATCACATGGACGCAAGCACCGCGGCCACTACGCTGGCATTGGCTGAGCAGCATT
CCTGTCGCGGGCTCAAGGACTTGTGCTTCAAGTTCCTTGCGTCCCCTGGAAATATCCTCAAGGCCGTTGTGGCGAATGAC
GGCTTCGAGCATGTGAGGCGCAGCTGCCCGTCTGTGCTCAAGGAGCTCGTTGCCAAACTTTCACCTTGATTTGAGACAGG
CACCGCCCTCTCTAGCTTGATTATCCTGCAATTTCAAGTAGTACT-----------------------------------
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>chr4B_134
CGAGAGTATGG---------------------------------------------------------------------
-----------------------------------------------------------------------TGCTATGCA
TATGCACCCAGTTTCAGAAAAA--TACAGTTATTGGGTATGACTGCACGCGCGCCTCCTCGGCAAAGGTACCCGCCAGCG
ATTTCACGCGCACTCGATCACCGCGCGCGGGAACGCGCCCCGGTACTGCATGCGCTGGCCGACTGCTCGTGTGATGCGCG
CGATTAATGCAGGCGCAGGCCAAGCAAGCGTCGACGTTCTGACTCCGTGCTTTCCAGCGACCTCGCAAGCTCC--ATAAG
AAGTTTAAGAACCTCAGAAGCTCCCACACCCGTTTGTCATTCTTCCCAGCGACGAAATCACTCGATCGATCCGTTCTTCC
CAGGC-TCGCCATGTCCGGCTCCCCCCTGTCCTCGA---GCGGCGGCATGCCGTGGCAGACCGCTTCGGCCATCGTTGCC
CGCCCATTGCCCGTCTGCGGCTCGCACGTCCTCAAGATCGACGGCTACTCCCGCACCAAGGGCCTCGTCAACGGCAAAGG
TGTCTCGTCCGAGAAGTTCGTCGTTGGGCGCCATCGTTGGTACATGAGGTACTTCCCTGACGGTTCCTCGGCAGGCCAAG
CTGGTTGGATATCTATCTACCTCTGTCTTGTGCACACTGATAGTGTCGATGATCAAGTCCACGCCCGGTGCAAGATCAGT
TTGCTCGACCAGGACGGGGAGCCGGTGCCGTCGCGCGTCACGGACAGCCAAACATGCCACACCTTCTCCAGCAACACAGG
GCCATGGGGCTGTCCTCAGCTCATCACCAGGAAGGACTTGGAGGAGTCACTTTACCTCAAGGATGATGTTTTCAGTGTCA
AGTGCGAGATCACTGTGCCTAGGGAGATCTTCACGGAGCCCATCTCACTGCTGGTCAGCGCGCCACCGTCTGACATGCAC
CGCCACTTTGGCCGGCTCCTCTCCAGCGGCGACGGGGCAGACGTCACGTTCGAGGTTGGAGGCGAGACGTTTGCGGCCCA
CAGGTGTGTGCTCGCCGCCCGGTCGTCGGTGTTCATGGCGGAGCTGTTTGGGCCG---ATGAAGGAGAACACCGA---TG
CTTCTGTACGCATCACTGACATGGAGGCTAAAGTGTTCAAGGCCATGCTCCACTTCATCTTCACAGACTCTCTGCCGCCC
ATGGACGATGAGCAGGAGGTGGTGGTCATGGCCCAGCATTTGCTTGTTGCGGCTGACACGTATAACCTCGAGAGGCTCAA
GTTGCTCTGCGTGGAGAAGCTCTGCAATCACATGGACGCAAGCCCCGCGGCGACTACGCTGGCATTGGCGGAGCAGCACT
CCTGTTGCGGGCTCAAGGACTTGTGCTTCAAGTTCCTTGCGTCCCCTGGAAATATCCTCAAGGCCGTTGTGGCGAACGAC
GGCTTCGAGCATGTGAGGACCAGCTGCCCGTCTGTGCT-AAGGAGCTCGTTGCCAAAATTTCACCTTGATTTGAGACAGG
CACCGCCCTCTTTAGCTTGATTATCCTGCAATTTCAAGTAGTACTAATGA------------------------------
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>chr1A_244
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----------CACTCGGGCGGCGTGCGCGGGAGCACGCCCCAGTAC----TGCGCTGGCCGACTGCTCGTGTGATGCGCG
CGATTAATGCAGACCAATCAGCCAGTCCCCCGTCTATAAGA----------------------------------A----
-------AGAACCCCCCAAGCTTCCACACTCGTCTGCCATTATTCCCAGCGACGAAATAC-----TC---ACGTTCTTTC
CAGGTTTCGCCATGTCCCTGCCTTCTGCCGGCGGCGGCGGCGGCGGCATGCCGTGGCAGACCGCTTCGGCCATCGTTGCC
CGGCCACTGCCCATCTCCGGCTCGCACGTCCTCAAGATCGACGGCTACTCCCACACCAAGTGCCTCGTCAACGGCAAAGG
CGTCACGTCCGAGACCTTCGTTGTTGGGCGCCACCGCTGGTTCATGAGGTACTTCCCGGACGGTCACTCGGCCGACCAAG
CTGGCTGGATATCCATCTATCTCCATCTTGTTCATACCGATAGTGACGACG---AAGTCGATGCCCGCTGCAAGATCAGT
TTGCTCGACGAGGATGGGGAGCCGGTGCCGTCGCATGGCGCGGACAGCCAAACATGCCACACCTTCTCGAGCAACACAGG
ACCATGGGGCTGTCCTCAGCTCATCACCAGCAAGGACTTGGAGGAATCGGTTTACCTCAAGGACGATGCTTTCAGTGTCA
TGTGCGAAATCACGGTGCCCCGGGAGATCTTCACGGAGCCCATCTCGCTGCTTGCCGCCGCGCCGCCTTCTGACATGCAC
CGCCATTTTGGCCGGCTCCTCTCCACCGGCGACGGGGCTGATGTCACATTTGAGGTGGGGGACGAGAGGATTGCGGCGCA
CAGGTGCGTGCTCGCCGCTCGGTCATCGGTGTTCATGGCGGAGCTTCTTGGACCA---AAGAAGGAGAAGGCCGGTGCTG
CTTCTGTGCGCATCACTGACATGGAAGCTAGAGTGTTCAAGACCATGCTCCATTTCATTTACACAGACTCGCTGCCAGAA
ATGAAAGAGGGTGTTGACGTGATGGTGATGGCTCAACGTCTGCTTGTAGCGGCGAACAAGTATAACCTCGAGAGGCTAAA
GTTGCTTTGCACGCAGAAGCTCTGCAGACACATGGAC-------------------------------------------
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>chr1B_484
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-------------------------------------CGGCGGCGGCATGCCGTGGCAGACCGCTTCGGCAACCGTTGCC
CGGCCACTGCCCATATCCGGCTCGCACGTCCTCAAGATCGACGGCTACTCCCGCACCAAGAGCCTCGTCAGCGGCGAAGG
CGTCACGTCCGAGACCTTCGCTGTTGGACGCCATCGCTGGTTCATGAGGTACTTCCCGGACGGCCACTCGTCCGACCAAT
CTGGTTGGATATCCATCTATCTCCATCTTGTTCACCCCGATAGTGATGACGATCACGTCGATGCCCGGTGCAAGATCAGT
TTGCTCGACCAGGACGGGGAGCCGGTGCCGTCGCATGGCGCCGACAGCCAAACATGCCACACCTTCTCGAGCAACACGGG
ACCATGGGGCTGTCCGTGGCTCATCACAAGGAGGGACCTGGAGGAATCGGTTTACCTCAAGGACGATGTTTTCAGTGTCA
AGTGCGAAATCACCGTGCCCGGGGAGATCTTCACGGAGCCCATCTCCATGTTTGTCGCCGCGCCGCCTTCTGACATGCAC
CGCCATTTTGGCCGGCTCCTCTCCACCGGCGACGGGGCTGATGTCACGTTTGAGGTGGGGGGCGAGAGGATTGCGGCGCA
CAGGTGCGTGCTCGCCGCTCGGTCATCGGTGTTCATGGCGGAGCTTCTTGGACCGGAGAAGAAGGAGAAGGCCGGTGCTT
CTTGTGTGCGCATCACTGGCATGGAAGCTGGAGTGTTTAAGACCATGCTCCATTTCATTTACACAGACTCGCTGCCAGAC
ATGGAGGAGGGTGAC---GCGGTAGTGATGGCTCAACGTCTGCTTGTAGCGGCGAACGAGTATAAACTTGAGAGGCTAAA
GTTGCTTTGCACGCAGAAGCTCTGCAGATACATGGAC-------------------------------------------
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>SNPs
SSSSSSSSSSS----------------------SS----------------------S----------------------
S-------------------SS----------------------------------------------------------
-----------------------------------S--------------------------------------------
----------------------------------------------S---------------------------S-----
---S--------------S-------------------------------------------------------------
--------------------------------S--S-----------------------S--------------------
-----------------------SS-------------------------------------------------------
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---------------------------------------------------------------------------S----
-------------------------------S--------------------------------------------S---
------------------------------S-------------------------------------------------
-------------------------S------------------------------------------------------
-----S--------------------------------------------------------------------------
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------------S-----------S-------------------------------------------------------
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------------------S-------------------------------------------------------------
------------------------------------------------S-------------------------------
-------------------------------------------S-----------S------------------------
-----------------------------------S-----S------------------S-----------------SS
SSS----------S----------------------S--------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_906
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-------GGCTCTCCTCAGCTCATCG------------------------------------------------------
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>reverse_2111
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------------------------------TTTTCCGTTCAACCCCCACA------------------------------
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