>input_sequence_76413
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---------------------------ATGGCCCATGGGAAGAGGTCTAGGCAGCAG---GCCGAGTCGACCTCGGTCAG
CCTGCTGGACCTGGACAGCGGCGACATGGCGCGCATCCTGCTGCTCTTCTCCGGCCACCACCAGCACCACGCCCACTACG
GGCCTT---------CGTCGCCCGAGAGGGTGTTCGAGTGCAAGACCTGCAGCCGGCGGTTCCCGTCCTTCCAGGCGCTC
GGCGGGCACCGTGCTAGCCACAAGAAGCCGCGCCTGGCGGACGGCGCCGGCGCTGAGCCGCCCAAGCCCAAGGTGCACGG
CTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGCGCCGTCGCGGCGG
CAGGGCCCGGCGTCGGGCTTGGCCTCAGCCTCGGCCTCGG------GCCGAACGAGGACGGCAACAAGAAGGCGGCGGCG
---GCGGCCGAGCTGGCGCTCGACCTGAACGAGCCGGCACT---------GGAGGAGGAGCCGGCCGATCGCGCCATGCT
TGGGCTCGCCGTGGGA------TT----CCCCGTGGTGGTTGACTTTCGACGTTAG------------------------
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>chr4A_1_TraesCS4A01G101000
TGCCCTGGCACAGGACGCATGGGTTCGTGCGACACCACTGCCAATTATGCATACCACGTCTAAGAAGGAAAAACGGT---
-----GTGCTACAGTTGGAGGTACCTGGAGCTTAATTCGAATAA-------TTTTTGTTGCAGGGTAGACTGGCACCGGA
TCTATTTAGCGGAGACTGGTACCGGGTCTAGCATTAATCTTACAGATGAGTGTGTAGTGTAGGCCAATGAAAGGAGAAAC
CCTATCTATATTCGTTATCTTTTCGACGAACGGGACACAAATCAAAGCTCTCGCAGTCACAG---CAAACGACCATGAAA
AGGATCGTTGGCAGCAACAACAAAATAACGACCATGAAAAGGATCGGGATCGAAAGCGCACGTCTCTCTCACCGAAAGCT
TTAGCACCGTGAACTGTGGGCGCTCATGGGT-TGATCGATCAGGATCAGTGGGCATAGGAATTCAGAACCCTCACTCTTC
TCAGCTAGTAGCAGCCCCAGTTGCTTGCCAGGGTTTATATCCTATGCAAAAGCAGCCTGCTCACTTGGAATGGGACCCGA
ACGAAAAAGCCATCATCACTCAGCACACGGCCAGTGGCGGCACACCATATCTATAGCTTCGTTCGTAACAAGTACG--CG
CACGCGCGGTACGAGACGAGCTAGCGCATGGAAGTAGCGGAACGGCCCGGCTTTGATTTCTAGCGCAACCAGATTGAACG
GTTTCGGCTCGCCGCGCGGCGGCTCAGCTCAGCTCGGGCCACCGGTGGATGGATCCGTCCCCTCTTTTGTCCGCCCTCAT
GCATGCCGTCACGGCGACGTGCGGCCTAACGAACCACGGCCCCTCGCGCGCCTTGACAAA--------------------
-----------GCATTTGGCATGCAACAGTGGACTTCTCTAGCTATAAATACGCGCCAGATCATCTCTTCCTCTCACTCA
TCCGGACCCATCCG-----AAAGCACCTGCCCATCAGC---------CTTCCTTCTCCTAGCTTTGTCTCGGTTGTCTTC
TGGTCTTGCGCTCTGCTC-TTGGACTAATGGCCCATGGGAAGAGGTCTAGGCAGCAG---GCCGAGTCGACCTCGGTCAG
CCTGCTGGACCTGGACAGCGGCGACATGGCGCGCATCCTGCTGCTCTTCTCCGGCCACCACCAGCACCACGCCCACTACG
GGCCTT---------CGTCGCCCGAGAGGGTGTTCGAGTGCAAGACCTGCAGCCGGCGGTTCCCGTCCTTCCAGGCGCTC
GGCGGGCACCGTGCTAGCCACAAGAAGCCGCGCCTGGCGGACGGCGCCGGCGCTGAGCCGCCCAAGCCCAAGGTGCACGG
CTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGCGCCGTCGCGGCGG
CAGGGCCCGGCGTCGGGCTTGGCCTCAGCCTCGGCCTCGG------GCCGAACGAGGACGGCAACAAGAAGGCGGCGGCG
---GCGGCCGAGCTGGCGCTCGACCTGAACGAGCCGGCACT---------GGAGGAGGAGCCGGCCGATCGCGCCATGCT
TGGGCTCGCCGTGGGA------TT----CCCCGTGGTGGTTGACTTTCGACGTTAGGTTG-AACAGAAGAAATTTGCGTC
TGAACCATACAAAATTTTGTACTAGTTCAATACGTA--------TTTGCATTGAGCTGCTGGAGAAGTCAACGACCCTTG
GAACATTAGAAATGCTGGCTCGCGTATATACT----TTTCTAAAGTCTCAGGGGCAGGGGCTCTGTATTTACAATGTTTG
ACTTCTGGCGGTATTTGTAGTACTACTAGACGGTTTTTTTCTCTTCTG--TTTCCCCTTTTTCCACGGGGAGTTCAGTTT
TATTTTATGCTCCTTG-----GAGGCATATCTACTACG---TACGTATGAATATGGCTGTAAACCTCTCGAATTACGAGA
ATATTATACCAGGATTTATTCCCAAGTCGGGCGGGCTATTTGTGGGTTCCTTGAAATCAAACTTTATTTAAATCTGTTCT
CATGGATAAGAATACGAGCCGCACAGGAAGGGTTTCACATGTTTTTTGTTTTGAAGCCGCTTGGATTAAACAGCGTCCAC
GCTCGAAATGGGATG--GCCGGCGAGGGCCTGTCAGGTCCTTGTCGGAGGTGAGAACGATTCGGTTCGTCGTGATGTCGT
CGATGAACGAGGGGCTGGGTAGAGAATCGCG----------GGGGAAGGGATGGTTGGAAGAGGAAGAAGAGTTGTTGGC
TGGAAAAATCTACTGACGCGAAAACTTTTATCATACAACTTACAAAATCAATCCCTGAATTGCAGCATGCCTGTTTGCTC
GCATGCCAAAACACCAGATTGTCCTTTTTGGTTTAAAACATACAGATTTGAGCGATGCTCGTCTGCAGACAAGAAGTTGT
CGCGCGCTTTGCCGCGCCATTCTTCGTTCATTCAATTCATTTTCTTGTGGAATTATCATTGCTGATCACTAGGTTGCGAA
CATTAGTTAACCTGGTCCCGGTGTTTTTCCTTGTGACGTTGTCGTCCTTAGCTTTTATTGGATGTGAGATTTGGACATAA
AGGAAAAGGCAGTGCTTATTACTGAGTAAATAGGCTATTTTTTGATTAAAT
>chr4D_1
TGCCCTGGCACAGGACGCATGGGTTCGTGCTGGACCACTGCCAATTATGCATACCACGTCTAAA----AAAAACGGT---
-----GCGCTAAAGTTGGAGGTAGCTGGAGCTT-------ATAA-------TTTTTGTTGCAGGGTAGACTGGCACCGGA
TCTATTTAGCGGAGACTGGTACCGGATCTAGCATTAATCTTACAGATAAGTTAGTAGTGTAGGCCAATGAAAGGAGACGC
A----CTATGTTCGTTATCTTTTCGAAT---GGGGCACAAATGAAAGCTCTCACAGTCACAGGAGCAAACGACCATGAAA
AGGATCGTTGGCAGCAACAACAAAATAACGACCATGAAAAGGATCGGGATCGAAAGCGCACGTCTCTCTCACCGAAAGCT
CGAGCACCGTGAACTGTGGGCGCTCGT---------------GGATCAGTGGGCATAGGAATTCAGAGCCCTCACTCCTC
CCAGCTAGTAGCAGTCCCAGTTGCTTGCCATGGTTTATATCCTATGGAAAAGCAGCCTGCTCACTTGGAATGGAACCCGA
ACGAAAAAGCCATCATCACTTACGGCCACTG-AGTGGCGGCACAGC-TATCTATAGCTTCGTTCGTTCGTAACAAGTACG
CACGCGCGGTACGAGACGAGCTAGCG-ATGGAAGTAGCGGAACGGCCCGGCTTTGATTTCTAGCGCAACCAGATTGAACG
GTTTCGGCTCGCCGCGCGGAGGCCCAGCTCAGCTCGGGCCACCGGTGGATGGATCCGTCCCCTCTTTTGCCCGCCCCCAT
GCATGCCGTCACGGCGACGTGCGGCCTAACGAACCACGGCCCCTCGCGCGCCTTGACAAA--------------------
-----------GCACTTGGCATGCAACAGTGGACTTCTCTAGCTATAAATACGCGCCAGATCCTCTCTTCCTCTCACTCA
TTCAGACCCATCCCAGCCAAAAGCACCTGGCCATCAGC---------GTTCCTTCTCCTAGCTTTGTCTCAGTTGTCTTC
CGGTCTTCTGCTCTGCTCTTTGGACTAATGGCCCATGGGAAGAGGTCTAGGCAGCAG---GCCGAGTCGACCTCGGTCAG
CCTGCTGGACCTGGACAGCGGCGACATGGCGCGCATCCTGCTGCTCTTCTCCGGCCACCACCAGCACCACGCCCACTACG
GGCCTT---------CGTCGCCTGAGAGGGTGTTCGAGTGCAAGACCTGCAACCGGCGGTTCCCGTCCTTCCAGGCGCTC
GGTGGGCACCGCGCCAGCCACAAGAAGCCGCGCCTGGCGGACGGCGCCGGCGCCGAGCCGCCCAAGCCCAAGGTGCACGG
CTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGCGCTGTCGCGGCGG
CAGGGCCCGGCGTCGGGCTTGGGCTCAGCCTCGGCCTCGGTCTCGGGCCGAACGAGGACGGCAACAAGAAGGCGGCGGCG
---GCGGCCGAGCTGGCGCTCGACCTGAACGAGCCGGCACT---------GGAGGAGGAGCCGGCCGATCGCGCCATGCT
TGGGCTCGCCGTGGGA------TTCCGGCCCCGTGGTGGTTGACTTTCGACGTTAGGTTG-AACAGAAGAAATTTGCGTC
TGAACCATACAAATTTTTTG--TAGTTCAATAC-TA--------TTTGCATTGAGCTGCTCGAGAAGTCAACGACCCTTG
GAACATTAGAAATGCTGGCTCGCGTATAGTATAACATTTCTAAAGTCTCAGGGGCAGGGGCTCTATATTTACAAGGTTTG
ACTTCTGGCGGTATTTGTAGTACTAGACGGG----TTTTTCTCTTCTG--CTCCCCCTTTTTCCACGGGGAGTTCAG--T
TTTTTTATGCTCCTTGGCCTTGAGGCATATCTACTACGGAGTACGTATGAATATGGTTGTAAACCTCTCGAATTACGCGA
ATATTATACAAGGATTTATTCCCAAGTCGTGCGGGCTATTTGTGGGTTCTTTGAAATCAAGCTTTATTTAAATCTGTTCT
CATGGATAAGAATAGTAGCCGCACAGGAAGGGTTTCACATGTTTTTTGTTTTGAAGCCGCTTGGATTAAACAACGCCCAC
ACTCGAAATGGGACGTCGCCGGCGAGGGCCTGTCAGGTCCTTGTCGGAGGCGAGAACGATTCGGTTCGTCGTGATGTCGC
CGATGAACGAGGGGCTGGGTTGAGAAGGAGATGGACTTGCTGGGAAAGGGATGGTTGGAAGAGGAAGAAGAGCTGTTGGC
TAGAAAAATCGACCGACACGAAAAATTTTATCGTACGACTTACAAAATCAATCCCTAAATTGCAGCATGCGTGTTTGCTC
GCATGCCAAAACACTAGATTGTCCTTTTTGGTTTAAGACATACAGATTTGAGCGATGCTCGTCTGCAGACTAGAAGTTGT
CGCGCGCTTTACCGTGCCGTTCTTCGTTCATTCGGTTCATTTTCTTGTGGAATTATCATTGCTGATCACTAGGTTGTGAA
CTTTAGTTAAGCTGGACTCGTGC-TTTTCCTTGTGACAATGTCATCCTTAGCTTTTATTGGATGCGGGATTCAGACATAA
AGGAAAAGGCGGTGCTTATTGCTGAGTAAATAGGCAATTTTTTGACTAAAT
>chr4B_1
TGCCCTGGCACAGGACGCATGGGTTCGTGCTGGACCACTGCCAATTATGCATACCACGTCTAAA----AAAAACAAAACG
GTGTGGTGCTAAAGTTGGAGGTAGCTGGAGCTT-------AACTGAAATATTTTTTGTTGCAGGGTAGACTGGCACCGGA
TCTATTTAGCGGAGACTGGTACCGGATCTAGCATTGATCTTACAGATAAGTTAGTAGTGTAGGCCAATGAAAGGAGACAC
A----CTATGTTCGTTATCTTTTCGAATG--GGGGCACAAATGAAAGCTCTCACAGTCACAG---CAAACGACCATGGAA
AGGATCTTTCGCAGCAACAACAAAATAACGACCATGAAAAGGATCGGGATCGAAAGCGCACGTCTCTCTCACCGAAAGCT
CGAGCACCGTGAACTGTGGGCGCTCATGGGGGTGATCGATCAGGATCAGTGGGCGTAGGAATTCAGAGCCCTCACTCTTC
TCAGCTAGTAGCAGCCCCAGTTGCTTGCCAGGGTTTATATCCTATGGAAAAGCAGCGGGCTCACCTGGAATGGAACCCGA
ACGAAAAAGCCATCGTCAGTCAGCACAGCACTCAT-----CACACCATATATATAGCTTCGTTCGTAACAAGTACG--CG
CACGCGCGGTACGAGACGAGCTAGCG-ATGGAAGTAGCGGAACGGCCCGGCTTTAATTTCTAGCGCAACCAGATTGAACG
GTTTCGGCTCGCCGCGCGGCGGCTCAGCTCAGCTCGGGCCACCGATGGATGGATCCGTCCCCTCTTTTGTCCGC-CCCAT
GCATGCCGTCACGGCGACGTGCGGCCTAACGAACCGCGGCTCCTCGCGCGCCTTGACAAAGCGAAAGCTCGATCGATTAA
GAAAATCGATCGCACTTGGCATGCAACAGTGGACTTCTCTAGCTATAAATACGCGCCAGATCCTCTCTTCCCCTCACCCA
TTCGGACCCATCCG-----AAAGCACCTGCCCATCAGC---------TTTCCTTCTGCTAGCTTTGTCTCGGTTATCTTC
TGCTCTTCTGCTCTGCTC-TTGGACTAATGGCCCATGGGAAGAGGTCTAGGCAGCAG---GCCGAGTCGACCTCGGTCAG
CCTGCTGGACCTGGACAGCGGCGACATGGCGCGCATCCTGCTGCTCTTCTCCGGCCACCACCAGCACCACGCCCACTACG
GGCCTT---------CGTCGCCGGAGAGGGTGTTCGAGTGCAAGACCTGCAACCGGCGCTTCCCGTCCTTCCAGGCGCTC
GGCGGGCACCGCGCCAGCCACAAGAAGCCGCGCCTGGCGGACGGCGCCGGCGCCGAGCCGCCCAAGCCCAAGGTGCACGG
CTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGCGCCGTCGCGGCGG
CAGGGGCCGGTGTCGGGCTTGGCCTCAGCCTCGGCCTCGGCATCGGGCCGAACGAGGGCGGCAACAAGAAGGCCGCGA--
----CGGCCGAGCTGGCGCTCGACCTGAACGAGCCGGCACT---------GGAGGAGGAGCCAGCCGATCGCGCCATGCT
TGGGCTCGCCATGGAA------TT----CCCCGTGGTGGTTGACTTTCGACGTTAGGTTG-AACTGAAGAAATTTGCGTC
TGAACCATACAAATTTTTGTAGA---TCAATACGTATTTGGAATTTTGGATTGCGCTGCTAGAGAAGTCAACGACCCTTG
GAACATTAGAAATGCTGGCTCGCGTATATACT----TTTCTAATGTCTCAGGGGCAGGGGCTCTATATTTATAAGGTTTG
ACTTCTGGCGGTATTTGTAGTACTAGACGGG----TTTTTCTCTTCTGCTCTCCCCCTTTTCCACGGGGGAGTTCAGT-T
TTTTTTATGCTCCTTGGCCTTTTTTTTTATCTACTG-------CGTATGAATATTGCTGTAAACCTCTTGAATTACGAGA
ATATTATACAAGGATTTATTCCCAAGTCGTGCGGGCTATTTGTGGGTTCTTTGAAATCAAGATTTATTTAA---------
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>chr4A_840
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-----------GCACTTGGCATGCGACAGTGGACTTCCATGGCTATAAGTACGCGCCAGATCTTCACTTCTTTTCCTTCA
TTCAGACGCATCCG-----AAAGCTCCTGGTCATCTGTCTCGACATTTTTGCCTCTCCTAGCTTCGTCTCAGTTGCTAGC
CTGGTCGTCTGACTTGTGCC-------ATGGCCCATGGGAAGAGGTCTAGGCAGCAGCAAGCCGAAACAACCTCCGTCAG
CCTGATGGACCTGGACGGCGGCGACATGGCGCGCATCCTCATGCTCTTCTCCGGCCACCACAACAGCCACGGTCACCAGG
GCGCTGCCGCGCCCGCGTCGCCGGAGAGGGTGTTCGAGTGCAAGACCTGCAGTCGGCGGTTCCCGTCCTTCCAGGCGCTC
GGCGGGCACCGTGCCAGCCACAAGAAGCCGCAGCTGGCTGACGG---------CGAGCCGGCCAAGCCCAAGGTGCACGG
CTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGCGGACACATGCGCCGCCACCGCGCCGTCGCGGCCG
CAGGGGCCGGCGTCGAGCGCGGCCTCAGCCTCGACCTCGACCTCGGGCCGAGAGGCGACGGCAAGAAGAAGACAACGGCG
GTGGCGGCCGGACTGATGATCGACCTGAACGTGCCGGCTCTGGCACTGGAGGAGGAGGAGCCGGCCGATCATGCCAAGCT
GGGGCTCGCCGTGGAAATGCAGTT----TCCCGTGGTGGTTGACTTCCGACGTTGAAATCTAACACAAGATATTTACGTC
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>SNPs
------------------------------SSS------------------------------SSSSS------------
-----------S-----------S---------SSSSSSS----------------------------------------
-------------------------S---------------------S---SS------------------------S--
SSSSS----S----------------SSSSS---S-------S---------S---------------------------
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SS----------------------------S------------------------------------S------------
----------------------------------------------S--------------------------S------
---------------------------SSS-S------------------------------------------------
--------------------------S-----------------------------------------------------
----------------------------------------------------------------------------S---
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--------------S-----------------------------------------------S-----------------
-S---------------------------------------------S--------------------------------
-------S------------------------------------------------------------------------
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----------------------S---------------------------------------------------------
--------------S--------------------------------------S--------------------------
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-------------S-------S--------------------------------------S-------------------
----------------------------------------------------------------S---------S-----
-------------------------SSS-SSSSSS---------------S-S-------------------------S-
-S------------------------------------------------------------------------------
---------S-------------------S-------------------S----------S-------------------
--------------SS--------------------------------------------------------S--S----
S------------S------------------------------------S----------------------------S
--------------------S-----SSSSS-------------S---------------------------S-------
-S--------S--S---S------S-------S---S-------------------S-------------S---------
--------------S---------------------S---------------------------------S---------
----------S---S---S--------------SS-----------------------------------------S---
-S--------S----S-S--SSSS-------------SS----S--------------------S-S----SS-------
----------S---------S--------------S---------S-----
>forward_283
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-----------------------CGACGAACGGGACACAAATC-------------------------------------
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>reverse_2391
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----------------------------------------------------------------------CTGTTTGCTC
GCATGCCAAA----------------------------------------------------------------------
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