>input_sequence_76388
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATGAGAATTCCATTCTTTCTCATCACAATCCTCCTT
CTCTCTCTCCAATTCAATGCTTCCCCAGTTGGTGGAAGCAAGAAGGTGACGAACATCCGCTTCTACCTCCACAACACCCA
TAAGGTGAATGATCCATCCTCGGTCCTTGTCGCACAAAACACCAATGCCACAGCCCACGCCCGTGGCTTAGTGCCCTTTA
GCTCCGTCTACGTGTTTGACGACGTGCTCACAAAGGGGGCCACAAGTAGATCTAAGGTGGATGGGAATGCACAGGGCATG
TACGTTGAAACGGGGAAAGACGGGTACACGATATTGTTAACTATTGACTGTGAGATGACAGATGGTCCATTCAAAGGCAG
CTCGTTCGTGATGTTCTCAAGAAATGAATTCAGAAAGCCAATCAGGGAGGTCCCCGTTATTGGAGGTCGTGGTGCATTCC
GAATGGCCAAAGGGTACGGCTTGCTCAAGACCGTTTGTGTTGACTGTATCAACTCGGTGAAACCGTCCAAGGGAGATATC
ATCGAGTATAATGTGACTCTCTACCTCCATTGA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G538600
ATGAAGTGTCAAACCCAAAATGAGCCAAAAGGTAGGATTTGTATTCTCTCAGGTTCTATCTATCACCGGATAGAACCCTA
TGTGCAACAAAAGTTCTTCTGCCTAAACATTCTAGCGAGTATAGTTTGCAAGTTTTAGACAAAGCGAGTGCGGAGTAGCG
GTGATAATAGTTGTAGAATTGGTTACTAGAAATATAAGCATCATTGCAGTTTTATATGTGGGAGAGACCTATGCTAATAT
ACTATCTATACTTGGAATTATATGTACTTATGATTGAAACCCTGCAAGCATCCGCAAATACTAAGAAATTTATTAAGGTA
AAACCAACCCATAACATTAAAATCTAAGGGTCCTCTACATCCCATAAGCAACAATACACAAACTTGGACACCGTAATGTA
TGCCACTCCGGCCATCCTTCCTAAGCAGATCATTACATACTGCAAAACGCTAAAGTGTGATCCGCATACATGGGCACTCA
TATGATGGGCACCGAAGGATAGTCAAGAAAACATAACATGCAACTCAAATCAACCATAGTCACCAAAAAAACCTCACGCC
GCCGCCATAGACCATGCTACCAATTCTGCCACCCATCCGCATCCTCCCGCATTTCGCCACTGCACCTCCAGTCTCTCTGT
GTCACCTAGCCATCGGCAAGGCACACATAGTGTTGCGGTTGGTGCCGAGGTCGAGCACAAGATGTTGGTGACAATACATT
ATGGAGTACAATTAATGGTTCCTCCCAATACATTATGGAGTACCAAGTAGCCTATAGATGGATCATATTAATTTCTGCCA
AAAGATAGGCAGTACTTAAGTATGTTCATTAATTATTTTCCATACATATAATA-CCAAAAGATATACTCAACTATGTATT
CATTAATTAA-T--TCCATATAATGGGTACAAAGGGATATCCTCCTCCACAGCTATAAATACACATACCAGACCTTCTCA
CCGATAACATTCAACTCACAATCCAAAAGCCACAAGAACACAATATGAGAATTCCATTCTTTCTCATCACAATCCTCCTT
CTCTCTCTCCAATTCAATGCTTCCCCAGTTGGTGGAAGCAAGAAGGTGACGAACATCCGCTTCTACCTCCACAACACCCA
TAAGGTGAATGATCCATCCTCGGTCCTTGTCGCACAAAACACCAATGCCACAGCCCACGCCCGTGGCTTAGTGCCCTTTA
GCTCCGTCTACGTGTTTGACGACGTGCTCACAAAGGGGGCCACAAGTAGATCTAAGGTGGATGGGAATGCACAGGGCATG
TACGTTGAAACGGGGAAAGACGGGTACACGATATTGTTAACTATTGACTGTGAGATGACAGATGGTCCATTCAAAGGCAG
CTCGTTCGTGATGTTCTCAAGAAATGAATTCAGAAAGCCAATCAGGGAGGTCCCCGTTATTGGAGGTCGTGGTGCATTCC
GAATGGCCAAAGGGTACGGCTTGCTCAAGACCGTTTGTGTTGACTGTATCAACTCGGTGAAACCGTCCAAGGGAGATATC
ATCGAGTATAATGTGACTCTCTACCTCCATTGAGTTTATATATGATTGTTATGCGTTTCTTATAGTTCATAATAACATTA
ATGGATGATTGAGTTTCTTGGTTATTATGCTTTGTCAAATTATCACATGACCCCCTCAACCTATCTTGTTAGTTTGAACT
TTTATAATAGATATGTTGCTTTCGCAAAAAATAAAACCTATCATGTTAAGCTTGCAGGCCACTGTTTTTCCCGATAATTA
TCATATCTTACTATTTCTAGTCCCGGAATAGCAGTATGCGTCCCAAATCATTTTCTTGCTTTTGGGCCTTTATACACCTT
TTCCTTTCAAACTAGCAGCCATCAGAATAGGCATGTGCTACAATAATAATATCAAACTGAAAAATATATTCCACAACCTG
ATGACTGATATACCCATGATCACATGTGACAAAAAAATCAGCTTTGGTATGATGCATTTTCAAAATGATCAGCCTTCGAT
CGTTCCAGCTAGATAAATTGAAGCAAGTTACTCAAAACAAAATCCCCATACGAAAAAAAACCAGAGCAAGTAAACTACAC
ATTTATTTTTGAAGGCATGCATGCCCAACAGCAGCAGCAGCTTTGAACCCAGCGGCTGTCCCGGTGGATAACAAGGTGGT
GGTGTCTTACTGACGAATGCAACCAAGTTTTTGACGGTGGATAAGAAGGGTGTACTACTCCACTATACATACAACAAATT
ATTAACACAAGCATATCAGAAAAACCAACTACTCTTATCACATCAATAACAGCTGGTTTGCCACCGCCTTAAACATATTA
GGTCTCTTCCTTGCCGGGACAGCTGTCCACGCAACTTTCACCTCCACTTGGGCACAGCCCATCCTCCGATTGACCACTTC
ATCAGAATGACCTAGAGTGAGGGCAAGGTATTCAAGTGCATCACCACCCACAAGAAATAGCGCCAGCTTCTTCTCCCGTG
TGACGGCGACCACACGACGACTCAACGGAACAGAGCCGCCATCACCGATTATGGTCGGCCCTCCTGCTGCTTC
>chr3A_762
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACCAAATATTCTATAGATGGCTCATATTAATTTCTTTCC
AAAGATAGGCAGTACTTAAGTATAATCATTAATTATGTGTACATATCTT-ATA-CCAAAAGATATCCTCCTATCTATATT
CATTAATTTTTT--CCCATATAAAGAATACGAAATGATATGCTC-TCCCCAACTATAAATACACAGACCAAACCTTCTCA
CCGATCATGTTCAATTCACAATCCAAAAACCACAAGAACACAAGATGAGAATTCGATTCTTACTCCTCACCGTCCTCCTT
ATATCTCTCCAATGCAATGCTTATCCGGTTAGTGGAAGCGAGAAGGTGACAAACATCCGCTTCTACCTTCACAACACCCA
TAGTGTGAATGATCCATCCTCGGTCCTTGTCGCCGAAAACAAGAATGCCACGGCTCATGCTCATGGCTTAGTGCCCTTTA
GCTCCGTCTACGTGTTTGATGACGTGCTCACCGAGGGGCCTGCGAGTACTTCTAAGGTGATTGGGAATGCACAGGGTATG
TACGTTGAAACGGGGAAAGATGGGTACACGATATTGGAAACTATTGATTGTGAGATGACAGATGGTCCGTTCAAAGGCAG
CTCGTTCGTGATGTTCTCAAGAAATCAATTCAGTAAACCAAGCAGAGAGCTCCCCGTTATTGGAGGCCGTGGTGCATTTC
GAATGGCCAAAGGATACGGCTTGCTCAGGACCGTATGCATTAACTGCATCAACTCTGTGAACCCGTCCAAGGGAGATATC
ATCGAGTATAATGTGACTCTATATCTTCATTGAGTTTATATATGGTTGCCATGTGTTCCTTGTAGCG-ATAATAACATTA
ATGGATGATTGAGTTTCCTAGTTATTGTGCTTTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3D_772
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CTATAGATGGATCATATTAATTTCTTTCC
AAAGATAGACACTACTTAAATATAATCATTAATTGCCTGTACATATCTT-ATACCCAAAAGATATCCTCCTATCTATATT
CATTACTTTTTTTTTCCATATAACGAATACCAAATGATATGCTC-TCCCCAACTATAAATACACAGACCAAACCTTCTCA
CCGATCATGTTCAATTCACAATCCAAAAACCACAAGAACACAAGATGAGAATTCGATTCTTACTCCTCACCGTCCTCCTT
ATATTTCTCCAATGCAATGCTCCTCTAGTTAGTGGAAGCGAGAAGGTGACAAACATCCGCTTCTACCTTCACAACACCCA
TAGCGTGAATGATCCATCTTCGGTCCTTGTCGCTGAAAACAAGAATGCCACGGCCCATGCTCATGGCTTAGTGCCCTTTA
GCTCCGTCTATGTGTTTGACGATGTGCTCACCGAGGAGCCCGCAAGTACATCTAAGGTGGTTGGGAATGCACAGGGTATG
TATGTTGAAACGGGGAAAGATGGGTACACGATATTGGAAAGTATTGATTGTGAGATGACAGATGGTCCATTCAAAGGCAG
CTCGTTCGTGATGTTCTCAAGAAATCAATTCAGTAATCCAAGCAGGGAGCTTCCCGTTATTGGAGGTCGTGGTGCATTCC
GTATGGCCAAAGGGTACGGCTTGCTCAGGACCGTATGCATTAACTGCATCAACTCCATGAACCCGTCCAAGGGAGATATC
ATCGAGTATAATGTGACTCTATATCTTCATTGAGTTTATATATGGTTGTCATGTGTTCCTTGTAGCG-ATAATAACATTA
ATGGATGATTGAGTTTCCTAGTTATTGTGCTTTGCAAA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--SS-------------------------SS-S
-----------------------SS-----------S-SSSSSSSSSS-S---------------S---SSS-S-S----
--------SS-------------S-SS---S--SS-----S---S---S--S-------------S----S---------
-----S-SS-----S-------------S--------------S----------S------S---S----SS--------
S-S----------S---------S------S--------S----------S-----------------S-----------
--SS-----------------------------SS------SS--------S-----S--S-S-----------------
-------------------------------SS-----S--S------S-----------S---------------S---
--------------------S---------------SS---------S--------------------------------
-------------------------S-------S--S----S-------S------------------------------
---------------------------S------S--SS--S----S--------S-----S------------------
--------------------S--S--S-----------------S----S---S---S---S---SSS------------
-----------------S-S------S-------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ACGCTAAAGTGTGATCCGCA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_1782
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CCCGGAATAGCAGTATGCGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
