>input_sequence_76364
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----------------------------------------------------------------ATGTCGGCGGCCGGCG
ATGACAAGCGTTGTGGCACCAAAAGAAAGGCCGCCGGCTCCGGCGAGGCGGCGCCGGCCGACGTCGCGACGCTGCGGCAG
GCGATCATGGCGCATCTGCTAACCTTCCCCGAGGCGGCGGCGCTGGACGCACGGCAGCTGGACGAGGCAGCCGACAGGAT
CGTCAGGGAGTCGGACCCCTCCACCGCGACCCCGACCGGCGAAGGCATGGTTCGCTACGACGACAAACGCATCAGCTCAG
CCTTCAACCTGGACAGCTGGCTGGAGCTCCACGCCGCCGAGGACCTCCCGCCCAACGGGGAGTTCCCGCCAGGGTGGCTC
GACGAGCGGAGGCGGATGCTGGACGAGGAGATGCGGCCGGAGAAGAGGGGCGAGCCCAACCACTCGCGATTCCAC---CT
AGCCAAGATGCGCGTCGACTTGCTCACCAAGGGCTACGTCGAGTTCCCCAAGCCGTACGTCGACTACACACCCC------
---------------------CCTTCCCGGTCTCTGAGCGCAGGCAGAGCAAGGACATCGCAACAGAGGTGGTGGCTGGA
TGA-----------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G514300
GGCGGTGACTACGGCGCCCACGCGGCCCGCGGGACTGG---CAGTGGCGACGGTGGGCTGCATGGCACCGTGGTCGTCCA
CGACCACGACTGCCCGTACAACGCCTGATTCCACACCGGGGTGGGCGGCCGGTCCTCCATCACCTCCCGCTTCACGTCCA
GCTCTGGCACGCAGACATCTCCGGTGGCTGAGAGCGTCAACATCTCCTCCAGCCCCTCCCATTGCTCCTCATGGCTGCGC
TTGTACTCCCTCTCGGAATCCTCCATCACGGCATGCACCAGCCGCTCCTCCTCCTCGGTCGTCATGATGGGAGGTGGTGG
TGGCGACGGCGACAGGGAGGGAGAGGGCGTCGCCA---------------------GGCAGCGCACTCTAGGCGGACTCG
GTGCGCGCATACGTGGCACGCGGGGCGGGCTACGAGCACGACCAACCAAAATATTTTGCTAGTGCATGTCATGCTCGTCC
TAGATCATGTGTTCCAGAGGGGCGAGTCGACGTCGTAGCGCTGGTCAACGAGGTAAGGTGCGGCCGCTCGCCAGGACGGG
GGAATGGGCACCCGATTTGAGCTCAGATGCCACCCATTGGGGAGGTGGGCATCGGACCACGACGGCAGGGTGCCGGTCTC
CCAGTACAAGCGACATACGCAGTACGAGCGCATGGGGACGTCCGAGACATACAATTCTTTTTTCTTTTGTGCCTCTCTTT
TTGCTAAAATAATTTGCCTCATTTTCTAGCCAGCTCCACCTCTGTAAGGTAATCTTGAACTTGTATGTCTTTGTCGCAAA
AGAAAAAAGAATTGAAAAGACCGGGCCTGGCCCAGACTTGACCAACCCACCGACTCGATCTCTTTGCCTAAAAAGAAACC
CGACTTGATCTCTTTATATATATAGACCGGGACGACACCGCCGCCGCCGCACCAATCCCAATCCTCAAGCAAACCTCCAA
AACCCATCAACCGACGGCCGGCACCAGGAGCGGTCGGCGGAAGGGGCGCTTAGCCGGCGCGCACATGTCGGCGGCCGGCG
ATGACAAGCGTTGTGGCACCAAAAGAAAGGCCGCCGGCTCCGGCGAGGCGGCGCCGGCCGACGTCGCGACGCTGCGGCAG
GCGATCATGGCGCATCTGCTAACCTTCCCCGAGGCGGCGGCGCTGGACGCACGGCAGCTGGACGAGGCAGCCGACAGGAT
CGTCAGGGAGTCGGACCCCTCCACCGCGACCCCGACCGGCGAAGGCATGGTTCGCTACGACGACAAACGCATCAGCTCAG
CCTTCAACCTGGACAGCTGGCTGGAGCTCCACGCCGCCGAGGACCTCCCGCCCAACGGGGAGTTCCCGCCAGGGTGGCTC
GACGAGCGGAGGCGGATGCTGGACGAGGAGATGCGGCCGGAGAAGAGGGGCGAGCCCAACCACTCGCGATTCCAC---CT
AGCCAAGATGCGCGTCGACTTGCTCACCAAGGGCTACGTCGAGTTCCCCAAGCCGTACGTCGACTACACACCCC------
---------------------CCTTCCCGGTCTCTGAGCGCAGGCAGAGCAAGGACATCGCAACAGAGGTGGTGGCTGGA
TGAAGCAGCTAGCTATGCAAAGAATCCTCATGTCTTTTT----TCTTTCTATGATCTATCTTTATCTATATGTGTGGAGA
ACTAATTAAGTTATGCAAGATTGCAAGTTACTGTAATATGTAGTTATGATCTATCCAAGTGTTTATGGAACCAATTATCC
ATGTTGGTGGTACTGTAATACTAGTACTTAGATAAGTTAGTGGTACTGCTGCAGCATCTTCAATAGGTAG----------
-------------------------------------------------------------CCTATAAAATTTGAATACC
AAGTACGGTTTTAGATGCGGAGAGAAGAT---------------------------------------------------
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--------------------TTTAGGTAACTAAAATGTTGTCAGCTTTTACAGTAGACTCAAAATTTGATATACCTC-AT
AAATTTTCAAAGGCAAATGAAACATGAAGATCCGACGGTGGGGAGGCCGGGAGGCGGATCCATGGTCATTGCCTCACGCC
ACAGTACGGTGAGGAGGAGGTTGGGAGATTCCGGCACGGAGCTTGCGGGGCGGTGGCTCGGCGAGGAATTTGGCAGTGGC
GGGGAGCTCGGGGGTGGCGAGGAATCGGGTGGAGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCTGATC
CGACGGTGTCGGGAGAGGGACGTCTGAAATCAAGGCGTGACTGCGCGCGGTTCGTGGCACACTGATTTTGGTGGTGGAAA
CGGCCGGTGGGGCTCGGGACGGCCATGCGGAGGTGGGTGACACAATGGCAGGGAAAGTTCACGAGGGTGGCAGCTGGCTT
CGCCTAGCCGCAATTTTTTATTTTTTATTT
>chr6D_4
---GGTGACCACAGCGCCCACACGGGCTGTGGTGGTGGTGGCAGTGGCGACGGCGAGCTGCATGGCACCGTGGTCGTCCA
CAACT---------CGTACAATGCCTGATTCCAGGACGAGGTGGGTGGCCGGTCCTCCATCACCTCTTGCTTCACTTGCA
ACTCCGGCACGTAGACGTCTCTGGCGGCCGAGAGTGCTAGCATCTCCTCTAGCCCCTCCCAATGCTCCTCCTGGCTGCGC
TTGTACTCCCTCTCGGAGTCCTTCATCACGGCATGCACCAGCCGCTCCTCCTCCTCGGCCGTCATGGTGGGAGGTGGCGG
TGGCGGCGGAGATGGGAAGGGAGAGGGCGTCGACGTCAGGTCGCGCACCCGCATGCGGCCGCACACTCTGGGCGGGTTCG
GTGCGTGT-------------GGGGCGAGCTACGAGCACAGCTAGCAAAGAAAGTTTGCTGGCGCATGTCGTGCTCGTCT
TAGAACCATGTG--------------------------------------------------------------------
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-----------------------TCCCATAGGGGTGAGTCGACGTTGTAGCGCCGGTCGGCGAGGTA-------------
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>chr2D_820
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-------------------------------------------AACCCACCGACTCGATCTCTCTGCCTAAAAAAAATGA
CTCGGTTTCTT-----TATATATAGACCGGGACGACACCGCCGCCGCCGCACCAATCCCAATCCTCAAGCAAAC------
---------------GGCCCGCACCAGGAGCGGTCGGCGGAAGGGGCGC-----------GCACATGTCGGCGGCCGGCG
ATGACAAGCGTTGTGGCACCAAAAGAAAGGCAGCAGGCTCCGGCGAGGCGGCACCGGCCGACGTCGCGACGCTGCGGGAG
ACGATCATGGCGCATCTGCTAACCTTCCCCGAGGCGGCGGCGCTGGACGCGCGGCAGCTGGACGACGCGGCCGATAGGAT
CTTCAGGGAGTCGGACCCCTCCACCGCGACCCCGACCGGCGAAGGCATGGTTCACTACGACGACAAACGCATCAGCTCGG
CCTTCAACCTGGGCAGCTGGCTGGAGATCCACGCCGCCGAGGACCTCCCGCCCAACGGGGAGTTCCCGCCGGGGTGGCTC
GAGGAGCGGAGGCGGATGCTGGACGAGGAGATGCGGCCGGAGAAGAGGGGCGAGCCCAATCACTCGAGATTCCAT---CT
AGCCAAGATGCGCGTCAACTTGCTCACCAAGGGCTACGTCGAGCTCCCCAAGCCGTACGTCGACTACACGCCCC------
---------------------CCTTCCCAGTCTCTGCCGACAGGCAGACCATGGAAATCACAACAGAAGAGGTGGCTGGA
TGAAGC----AGCTATGCAAAGAATCTTCATGTCT---ATATATCTATCTATGATCTATCTAATATC-TATATGTGGAGA
ACTAATTA------------------------------------------------------------------------
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>chr2A_1028
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-----------TGTGGCACCAAAAGGAAAGCGGCCGGCTCCGGCGAGGCGGCGCCGGCTGACGTCGCGACGCTGCGGGAG
ACGATCATGGCGCATCTGCTAACCTTCCCCGAGGCGGCGGC--------------AGCTGGGCGACGCGGCCGACAGGAT
CGTCAGGGAGTCGAACCCCTCCACCGCGACCCCGACCGGCCAAGGCATGGTTCGCTACGACGACAAACGCATCAGCTCGG
CCTTCAACCTGGGCAGCTGGCTGGAGATCCACACCGCCGAGGACCTCCCGCCCAACGGGGAGTTCCCGCCGGGGTGGCTC
GAGGAGCGGAGGCGGATGCTGGACGAGGAGATGTGGCCGGAGAAGAGGGGCGAGCCCAACCACTCGCGATTCCATCTACT
AGCCAAGACGCGCGTCGACTTGCTCACCAAGGGCTACGTCGAGTTCCCCAAGCCGTACGTTGACTACACGCCTTACTGAT
GTTAGAGGATCTGGATCCCCGCCTTCCCAGTCTCTGCCCGCAGGCAGACCGATCCCATCAGAACAGAAGTGGTGGCTGGA
TGAAGC----AGCTATGCAAAGAATCCTCATGTCTAGTATATATCTATCTAT------------ATC-TATATGTGGAGA
ACTAATTAAGTTATGCAAGATTGCAAGTTACTGAAA--------------------------------------------
--GTTGCTGGCACTGTACTTTTTCCAAATCCGCGTATTGCCATAAAGCAGTCGAAGCGCGAGGCGCCCTGTCTTTTTGTG
TACTTTTTCCAAATCCGCATACTTTTTCCAAGTTCACGTACTTTTTTCAAATCCGTGTACTCATGTAATTTTTTAAATTG
ACGTACTTATTCATATCCGCGTACATTTTTTTGGAAAGAGCTAATGAATTTGAAAAGTTTATGCGAACTTGAAAAAGTAC
ACGGATTTGAATTTCTTTTACGTAAATTAGAATAAATGTGTGGATTTGAAAAATAATGTCTACTTGATACAAGTATGTGA
ATTTCAAACAAAGTTCACAGATTGGAAAAGGAACACGGATTTGAAAAAATACATAAACTTTAAAAAGTATGCAGATTTGA
AACAAGTACGTGGATTTCAAGAACACCATGGATTTGAAAAAAAATACTTGGATTTGATAAAATTACACGAACTTGAAAAA
ATACACTAATTTGAAAAAAGTATGCAAATTAAAAAAATCACGAATTTGAAAAAGTACACAAATTTCAAAATAGTTCACGG
ATTTGAAAAAGGTATGTGTATTTGTGAAAAACTTGCGCGATCTTGAAGAACCTATGTGGATTTGAGAAGAGTATGTGAAT
TTCAAAAACTTCAAAGATTTGTAAAAATTACGCGAATTTGAGTCAGCACTGGTCAAAACCGGGGCCAGGGACGAACCTTG
TCCGGTTTCATTAGTTGGGGGTGCAAGTTGTCCGGTTTCGAAATTGAGAGAACAATCTAAACTTCACCGAGAGTTGAGGG
ACGAAAAGTATACTTTTCTCTTTAGGTAACTAAAATGTTGTTAGCTTTTATAGTAGATTCAAAATTGGATACCTAATAAT
AAATTTTCAAAAGCAAATGAAACATGAAGATCCGACGGTGGGGAGGCCAGGATGCAGATCCACGGTCATTACCTCACGCC
GCAGTACGGCGAGGAGGAGCGTGGGAGATTCCGGCGCGGAGGTTGCGGTGGCGG--------------------------
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>SNPs
SSS------S--S--------S---S-S-S--SSS------------------S-S------------------------
-S--SSSSSSSSSS-------S-----------SSS--S------S--------------------SS-------S-S--
S---S------S----S----S--S---S-----S-SS-S---------S-----------S--------S---------
-----------------S----S-----------------------------------S-------S----------S--
-----S---S--SS--S---------------S-S------------------------S--S------S-----SS---
-----S-SSSSSSSSSSSSSS------S-----------SS-S-S-S--S-S-S------S-S-------S--------S
----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S----------S--SSS
-SSSS-SSSS-SSSSS----------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSS----S-----------------------------SSSSSSSSSSS--------------------
-------------------------------S---------------------------------------------S--
S-------------------------------------------------S--------------S--S-----------
------------------------------------------------------------------------------S-
------------S-------------S-------------------------------------------S---------
--S-----------------------------------------------------------------------S-----
---------------------------------------------------------------------S----------
----------------------------S-------SS----------S----------S-------S------------
------SSSS-------------------------SS-S-------S--------------SSSSSSS---S--------
---------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----S---S------S-SS-SSS-SS-SSSSSSS--SSSSSS-SSSSSS-SSSSSSSSSSSSSSSSS-----------
--------------------------------------------------------------S-S---SS---S--SSSS
-S----SSS--S-S--S--SSS-S-SSS----------------------------------------------------
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-----------------------------------------S--------S------S--------S----SSSSSS---
-----------S------------------------------------S---S--S------S-------S---------
S--------S---------SS--------------S-----S------S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_541
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-----------------------------------------TGGTCAACGAGGTAAGGTGC-------------------
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>reverse_3146
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-------------------------GAAATCAAGGCGTGACTGCG-----------------------------------
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