>input_sequence_76346
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-ATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGGCGCA
AGCTCTCCGTCGCCTCCAAGTCCGACGCGGCGGCGGCCAGCACGCCCGCCGTCGCCACGGTCACCGCCGGAGGCAACGGC
GAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGTCGGCGGCGTCGTCGGGGCC
GCCGCCCAAGGGGCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAGCACC
AGGCGTTCGCGGCGCTGCTCCGGGAGGCCGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTGCGAC
GTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGCGCCGGCGGCAAGAACAAGGACAACGCCGCCTTCTG
CTACTGCAGCGCCGAGTTCGCCATCGCCGCCGCCGACGTCGGCACCCCCAACAACTCCCTCTGCAGATAA----------
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>chr2A_1_TraesCS2A01G430400
AAAAGTATACTTTTCTCTTTTATGTACGTGCGAGACGACTAGATTTGGTATGATCCATTGAAGGGTTTAATGGCAACAAT
TGCAACTTTGGGACCTCGATCCTTATTGGCATGTGTATGAAGACTTTCCGACTATCAATGACATGGTCAAGCCGGCTCTT
GTAAGGGAGTGGCAATAATGACGCGTGAGCAGCTCAATCTACTAGCGGCCGTGGTCATCCGATGGCCCATGAATCTCAAT
GTAATTCTTATCATGTTTGTGGTGCTGCTTTGTACATTCAGTGAACCTTTATAGTAGATTTAGAT-CCCTTTTCCCAAAC
TATAGTTACAAAAAAAACATTTTTATCCACTTTCACCGTACGACCCTAACAAACTTTCGGTTAATAACAAGGGGCTACTA
TCCTTCGAGGACGAAGGAAAAAACATCATCTCGATCTACCTTTGATAAAAAAACAATAGGGTAAAATCCAAGAGGGTTAC
GACTATACACTTCATTTCCGATCTACCCTTG--GATAAAAAGGCTACCCTAACCGTCCACAAATCCAAGTCAAAGCGCAA
CACATGACACTGCGTGAAGAGCAAAAATAATCTCGGTTAAATTTTCGCCGGTCAGTTGCTGGCCAGCACACATTTCCCCA
ACCAAGGTGCCAATAACAAACGCAGGTCCATTCAGACGCTTCGAACTGGCATTCACAAAACCTCATCTCAACATAATTAA
CAACTCCATTATTCAGAGAAATAA----------AAAAAATCCACAATCATCATCATAATAATCATAATAAAATAGAAAC
AGTAGAAACTGCCGCTACCCCTCACGGAAACCCTACACCGCCGGTGGGCCCCACCGGCCCCCTCCCCCCTTTAAATGCCC
CCTCGACGAACG-GCCCCAAGCAGCGCAACAGCAACAGCAACATCAACGCCACACCCAAACCAGAGCCCGAAATCCCGTA
GAAGAAGGAGGAAAGGAG-----------------------ACCACCGCCCG----GAGATCTTCCGTCGGAGCGCCGGA
GATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGGCGCA
AGCTCTCCGTCGCCTCCAAGTCCGACGCGGCGGCGGCCAGCACGCCCGCCGTCGCCACGGTCACCGCCGGAGGCAACGGC
GAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGTCGGCGGCGTCGTCGGGGCC
GCCGCCCAAGGGGCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAGCACC
AGGCGTTCGCGGCGCTGCTCCGGGAGGCCGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTGCGAC
GTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGCGCCGGCGGCAAGAACAAGGACAACGCCGCCTTCTG
CTACTGCAGCGCCGAGTTCGCCATCGCCGCCGCCGACGTCGGCACCCCCAACAACTCCCTCTGCAGATAA--------GC
CCGGCCCGGCCGGCCGCCGGAGCCCCGTCGTCGCTCGCCGGCCACCGTT---AGAAGTACCTGACTACCATCCTC----T
CCCACGAAAAAAAAAAGTTCTGTTCTCCATTTTTCTTCTTCTTCTTCGTCGGTCGTGTTTTTCCAGCGTCGTGATGGTGA
GGGATGATTCGACGTACGGTATCTCCCCCCACGGTTTTTTTCT---TACTAGGAATTATCATTACCACTGCCCGCATTCT
TTCTCCGATGATGATCTGGATTAGCCGGGTGAATGGTGTAATGC----ATGCATGCGGACTGCGCCATTGATGGAATCAT
ATGGAAAGATT-GATGTGAAAAATGAAGGGCGATGATCTTTTTTCTCTCTTGATTGATTGATTTGTTGTTGCCCATTTTA
TCAGGGGTCTGTTGCGATGTCACCGGAAAGATTTTGAATGTTCCGTTCGATACGCTGCAGTTATGGGTTGCCTTTACATA
TTTCGCGTGCGTACATCTTCTATGGCAGCCGGCCG--TTGTTGTAAAATAATCTTCA-----------------------
----CTTGACTATTGGCGCGCATGTGTTGTAGTACTACCACGTACCTGCTGTACCCTCTGGTGAAATGAATGCCACCTTT
GGATCAATCGGAGTAACGTACTGCAATTCGATCCAATGCTGGAAAGAAGAAGAAAAACAGTCGCCACATGCACACAACTA
TTTTTTGTGAAAAAAAAAGT-----CCACAGTGACGTTTTTGGCGCCTTTTACTGCCTGT------------------CC
ACTGCTCGTCACATGAGGCAAAGCGTGCACTCTGGAGCCGTTATCTGAGCATCGGCTA----------------------
--------ACACTTGTACGGTGCAAAGCAAAACTGGCGACCAACTGTACGACGAAGCTAGGTGACATACAGTACCAGTAG
GGACAAACACGGCACCCAGATTCATGAAGGCCACTGTTCCCGTCGATCGCGCCGCACCGTACCTGCACGGCTGCACCGGC
GCAACGCAATGCAGGACCCGGCTGCTGTCTGTCGTCAGGGTCGTGCCCCTCATCA
>chr2D_22
---------------------ATGTACGTGCGAGGCGACGAGATTTGGTATGATCAATTTAATGGCTTAATGGCAACGAT
GGCAGCTTTGGGACGCTGATTCTTATGGTCATGTGCATGAAGACTTCCCGACTGTCATTGACATGGTCAAGCCGGCTCTG
GTAAGGGAGTGGCAATGACGACACGTCAGCGGCTCGTTCTCATAGCGGTAGTGGTCACTCAGTGGTGCATGAATCTCGAT
GTAATTCTTAGGATGTTTGGGG---TGCTTTGTACATTCAGTAAGCCATTATAATAGATCCATACCCCTTTTCGCAAAAA
TATAGTTAGAAAACAAATGTTTTGTG-CACTTTAACCATACGACCCTAACAAACTTTCGGTTAATAACAAGAAGCTACTA
TCCTTCGGGGACGAAAG------------------------------AAAAAACAGTAGAGTAAAATCCAAGAGGGTTAC
GACTATATACTCCA-TTCCGATCTACCCTTG--GATAAAAAGG-----CTAACCGTCCACAAATTCAAGTCAAAGCGCAA
CACATG-CACTGCGTGAACAGCAAAAAGAATCTTGGTTAAATTTTCGCCAGGCAGTTGCAGGCCAGCACACATTTCCCCA
AA---GGTGGCAACAACAAACACAAGTCTATTCAGATGCTTCGAACTGGCATTCACAAA-CCTCATCTCAAC-TAATTAA
CTACTCCATTATTCAGAGAGATC---AGAGAAATAAAAAACCCACAATCATCA-------------AAAAATAA--AAAC
AGTAGAAACTGCCGCTACCCCCCACGGAAACCCTACAATTAAGGTGGGCCCCACCGGACCCCTCGCCCTTTAAA-TGCCC
CCTCGACGAACG-CCCCCAAGCAGCGCAACAGCAACGCCAC-----------------AACCAAAGCCCAAAATCCCGTA
GGAG-----GAAAGGAAACGCTCCCGCTCTCGCCCGTGAAAACCACCGCCCG----AAGATCTTCCCCCGGAGCGCCGGA
GATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGGCGCA
AGCTCTCCGTCGCGTCCAAGTCCGACGCGGCGGCGGCCAGCACGCCCGCCGTGGCCACGGTCACCGCCGGCGGCAACGGC
GAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGTCGGCGGCGTC---GGGGCC
GCCGCCCAAGGGCCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAGCACC
AGGCGTTCGCGGCGCTGCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTGCGAC
GTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGC---------AAGCACAAGGACAACGCCGCCTTCTG
CTACTGCAGCGCCGAGTTCGCCATCGCCGCCGCCGACGTCGGCACCCCCAACAACTCGCTCTGCAGATAATAAGCCCGGC
-----CCGGCCGGCCGCCGGAGCCC-GTCGTCACTCGCCGGCCACCATTAGCAGCAGTACCTGACCACCATCCTGTCTGT
CCCACGAAAAATGCT-CCTTTTTTTCCCG---TTCTTCTTCATCTTCTTCGGTCCTGTTTTCTCAGCGTCGTGATGGTGA
GGGATGATTCGACGTACGGTATCTCCCCCCACGGTTTTTT-CT---TAGTAGGAATT---ATTACCACTGCCCGCATTCT
TCCTCTGATGATGATCTGGATTAGCCGGTTGA----TGTAATGC----ATGCATGCGGAC---GCCATTGATCTTATC--
ATGGAAAGATTGGATGTGAAAAATTAAGGACGG-----TTTTTTCTCTC----TTGATTGATTTGTTTTTGCCCATTTAC
-CAGGGATCTGTTGCGATGTCACCGGAAATATTTTGAATGTTCTCTTTCATACGCTGCAGTTATG----GCCTTTACATA
TTTCGCGTGCGTACATCTC--------GCCGGCCG--TTGTTCTAAAACAATCTTAACTATTCTTCAGGA-AAAAAGAAA
CAATCTTGACTATTGGCGCGCATGTGT-------------------------ACCCGCAGGTAAAATGAATCCAACTTTA
GATCGCAGTACT---ACGTGGTGCAATTCGATCCCA-----------------AAAAAAGTCACCACATGCACCCAACGA
TTTTTCTTAATAAAAAAAGGCACTGCCACAGTGGCGTTTTTGCTGCTTTTTTAGGGAGCCTTTCTACTACTGTTTTTACC
ACTGGTCGTCACATGAGGCAAAGCGTCAGGTGAGCACTGTGCGGCATTGCCTGAAGCCGAGTACAGAAACGGCCATGGGA
TAAAACACACACTTGTACGGTGCAAAGCAAAACGGGCGACCAACCGTACGACGAAGCTAGGTGACATACAGTACCAGTAG
GGACAAGCACGGCACCCAGATTCATGGAGGCCACTGTTC-----------------------------------------
-------------------------------------------------------
>chr2B_447
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-----------------------------------------------AAAAAACAGTAGAGTAAAATCCAAGAGAGTTAC
GACTATATACTTCA-TTCCGATCTACCTTGATCGATAAAAAGGCTACCCTAACCGTCCACAAATCCAAGTCAAAGCGCAA
CACATGACACTGCGTGAACAGCAAAAAGAATCTTGGTTAAATTTTCGCCAGGCAGTTGCTGGCCAGCACACATTTCCCCA
A----GGTGGCAATATCAAACGCAGGTCTATTCAGATGCTTCGAACTGGCATTCACAAAACCTCATCTCAAC-TAATTAA
CTACTCCATTATTCAGAGAGATCAGAAGAAGAAGAAAAAATCCACAATCATCATCATCATTATAATAAAAATAA--AAAC
AGTAGAAACTGCCGCTACCCCCCACGGAAACCCTACAATTAAGGTGGGCCCCACCGGGCCCCTCGCCCTTTAAA-TGCCC
CCTCGCCGAACGCCCCCCAAGCAGCGCAACAGCAACGCCAC-----------------A-------CCCAAAATCCCGTA
GAAAAAGGAGAAAGGAAACGCTCTCGCTCCCTCGT---AAAACCACCGCCCGCCCGAAGACCTTCCGTCGGAGCGCCGGA
GATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGGCGCA
AGCTGTCCGTCGCGTCGAAGGACACGACGGCGGCCGCCAGCACGCCCACCGTCGCCACGGTCACCGCCGGCGGCAACGGC
GAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGGCGGCGGCGTC---GGGGCC
GCCGCCCAAGGGCCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAGCACC
AGGCGTTCGCGGCGCTGCTCCGGGAGGCCGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTGCGAC
GTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGCGCCGGCGGCAAGCACAAGG---ACGCCGCCTTCTG
CTACTGCAGCGCCGAGTTCGCCATCGC---CGCCGACGTCGGCACCCCCAACAACTCGCTCTGCAGATAA--------GC
-----CCGCCCGGCCGCCGGAGCCC-GGCGTCAGTCGCCGGCCACCGTT---AGCAGTACCTGACCACCACCCTC----T
CCCACGAAAAAAAAT-GTTCTCTTCTCCA---TTTTTCT---TCTTCTTCGGTGGTGTTTTCTCAGCGCCGTGATGGCGA
GGGATGATTCGACCTTCGGTATCTCCCCCCACGGTATTTT-CTTAGTAGTAGGAATT---ATTACCACTGCCCGCATTCT
TTCTCTG-TGATGATCTGGATTAGCCGGGTGA----TGTAATGAACTGATGCATGCGGAC---GCCATTGATGTTATC--
ATGGAAAGATTGGATGTGAAAAATTAAGGACGG-----TTTTTTCTATC----TTGATTGAT------------------
--------CTGTTGCCATGTCACCGGAAAGATTTTGATTGTTCCGTTTGATACGCCGCAGTTATG----GCCTTTACATA
TTTCGCGTA-GTACATCTC--------GCCGGCCATTTTGTTCTAAAACAATCTTAACTATATTCTTCAGGAAAAAGAAA
CAGTCTTGACTATTGGCGCGCATGTGTTGCAGTACGCCT---------CTGTACCCGCTGGTAAAATGAATCCACCTTTA
GATCGCAGTACTG---CGTGGTACAATTCGATCTAC-----------------AAAAAAGTCACCACATGCACCCAACGT
TTTTATATACAG-------------------------TTTTGCTGTTTTTTTAGGGAGCCTTTT---TACTGTTTTTACC
AGTGGTCGTCACATGAGGCAAAGTGCCCGGCGAGCACTGTGCTGAGTG---------------------CGGCCATGGGC
TAAAACTCACGCTTGTACGGTGCAAAGCAAAACTGGCGACCAACCGTACGACGAAGCTAGGTGACATACAGTGCTAGTAG
GGACAAACACGGCCCCCAGATTCATGAAGGCCACTGTTCCTGTCGATCGCGCCCCACCGTACCTGCACCGG----CCGGC
GCAACGCAATGCAGGACCCGGCTGCTGTCTGTCGTCAAGGTCGTGCCCCTCGTCA
>SNPs
SSSSSSSSSSSSSSSSSSSSS-------------S----S---------------S---S--S--S-----------S--
S---S---------SSS---S-----S-S------S----------S------S---S---------------------S
----------------S-S---S---S---S----SS---SS------SS-------SS-SS---SS----------S--
----------SS-------S--SSS-----------------S-S--S-----S-----SS-S-S---S---SS-S---S
--------S----S---SS----SSSS------S---S---------------------------------SS-------
-------S-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---S--------------------
-------S------S-----------------------------------------------------------------
------------------S--------S-----S---------------S-S----------------------------
-SSSS----S------------------S-------S-----------------------------------S-------
-S-----------------S--S----------------------------------S--S--S----S--S-SSS----
---------------------S---------------SSSSS---------------S------S---S--S--S-----
-------------S----------------------SS--SSSSSSSSSSSSSSSSSS-----S-----S----------
----------S--S-S-S--------------------------------------S-----------------------
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-------------S--------------------------------------------------------S---------
-----------------------------------------------------------------------SSS------
------------S-------------------------------------------------------------------
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---------------------------------------------------------S----------------------
---------------------------------------------------------S----------------------
SSSSS--------------------S------S---------------------S----------S--------------
--------------SS-----S-------SSS---------S-----S-------------SS-----------------
----------------------------------------S-------S--------SSS--------------------
-----S--------------------------SSSS------------------------SSS----------SS---SS
------------------------S----S--SSSSSS-----------SSSS--------------S----------SS
S-----S----------------------------------------S-----------------SSSS-----------
------------------SSSSSSSSS---------------S-----S------S------------------------
-----------------------------S-----SS-SSSSSSSSSS--------S-----S--------S-S--S--S
-SSSSS-SSSSS-SS----SS---------------SSSSSSSSSSSSSSSSS----S----S----------S----S-
------S-S----------S-------------S--------SS--S----SSS-SSSSS--------------------
----S---------------------S-SS-SS-S-SSSSSSSS-SSS--S-SSSSSS----------------------
--------------------------------------------S-----------------------------------
----------------------------------------S------------S--------------S-SSSSS-----
-------------------------------------S-------------S---
>forward_932
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--------------------------------CAACAGCAACATCAACGCCA----------------------------
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>reverse_1819
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----------------------------------------------------------TCATTACCACTGCCCGCATT--
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