>input_sequence_76297
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---------------------------------------------------------CCGCATCAGACATCAAATCCCCA
ATCCCCAATCCCCTCCAATCCCACCTTCGGGACAGCAGCCAGCAAGCGTCGCCAGCCATGTCAGGCCGAGGCAAGGGAGG
CAAGGGCCTGGGAAAGGGCGGCGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGA
TCCGGCGGCTGGCGCGGCGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGTGGCGTGCTCAAGATC
TTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGT
CTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGGCGGCTGAGCCAGGGTCGTGCCTCGCGTGGGATTTAGAT
GTGGTTAGGCGGGTCGTCGTTCTGTGGTGTGTGCTTGTCCTGTGTGTGCGTGTGCAGCTGCGTGCTGGTGGTTGTAATGA
GTTCCAGATTATAATATGGGTGTTCATCTCGCATTGGATTGAATCG----------------------------------
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>chr1A_1_TraesCS1A01G201300
CCGATTTATTTTTCTTTTTTCTTTTTTTA----TTTTGTCCTTC-TTTTTTCATAAAAATGTTAAAAATTTGTTTGCGTT
CACAAAATTGTTTGGAAGT-TTCATAAATAAATATTCTCAAAAATTTTAAAAAAATTGAG--TTTTGCCAGAAATGTTCA
AAAAATGCAAAATT-AAAAAATGTTCAAAATATTCGAAATTTGTTTGCCTTTCCAACAAATGACATGATTTTTTTGAAGA
AAACATTTTGTTTTTGTAAAAAAA--TGATCGTGTTTTACAAAATTTGTTCAAAGATTTCAAACAATGTTTTGGATTTCA
ATTTTTTGTTCATGTATTCAAAATTTGTTTGTGCTTCCAAATTTGTCCGGGGTTTTCGAAATTGTTATCCATTCCAAAAT
TTATTCTCAAATTT-TAAAAAATGTTCATGCTTTATAAAATTGTTAACAAATTCTATAAATGTTCATGTTTTGGAAAAAG
G-TTTGGGAAATTTAAAATTTGTTCGTGATATCATAAAATTGTTTGCTCTTGTCAAAAAAATCGCACGCTCGAAAGGC--
TAATTAAAATTTGGAAAATTGTAAAGGATTTTTTTCCTGAATCGCCGAAGGAGCTCCCACCCTGCACTGGACTGCCACAC
GGTTCTAGCTCGCGGGCCTCTCTCTTCCGTGTATCAGCTGCCCCCTTCATGGTGAAGGTCTATCGTTAGCTGTTAAAGCC
TACGGCCCAGGTGACTGCAAGATTTCTCAAAAAAAATGGTGATTGCAAGTCCGCAACCATCGCCCGCCACGTCACCGCTC
CGCACCTCTGATCTCAGTAAACATCCGCCCTCCGTTCCTAATCCAACGCTTCGCAACCACCATCCCACGGATCGATCTCC
TCCCTGTGTTTCTCCCAGCCACGTCACCGATCCTTGCGCAGCTCTCTCCACGAATCACGCGCTCGGAACCCAGCATCCCG
CGGATCCGTCCC-AAGCCCCTCTCCGGTAT-AAAGAACCACCACCGTTCAACCTCCACCGCATCAGACATCAAATCCCCA
ATCCCCAATCCCCTCCAATCCCACCTTCGGGACAGCAGCCAGCAAGCGTCGCCAGCCATGTCAGGCCGAGGCAAGGGAGG
CAAGGGCCTGGGAAAGGGCGGCGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGA
TCCGGCGGCTGGCGCGGCGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGTGGCGTGCTCAAGATC
TTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGT
CTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGGCGGCTGAGCCAGGGTCGTGCCTCGCGTGGGATTTAGAT
GTGGTTAGGCGGGTCGTCGTTCTGTGGTGTGTGCTTGTCCTGTGTGTGCGTGTGCAGCTGCGTGCTGGTGGTTGTAATGA
GTTCCAGATTATAATATGGGTGTTCATCTCGCATTGGATTGAATCGTGTGTTTTGCTCTGATCTGACCACTGGCGAGGTC
TGTCCCTGCAGACTTCGAACATTAGGCCGTTTGTTTGTACTA-CTAGTATGTTGAATGCAGAGTTTATAACTGTTGATTA
ACCACTGTTCGTTAGATTAGAACCTTCCTCCAGCGGTTTGTTTGATGAATCCAGAGTTGAGAGCTGTCGATGAATCACTG
TTCGTTAGATAAATGGTTGGGCGGATGGTAGCGCGAGCTAAATGCTCAACTCAGTAGAA-----------GTTGACGAGA
ATAGTTCAGTTTTTTTCTAGGGAAGGAGACTAGTTCAGGGCCTAAACACAGGAACAGAAAAAACACAGGATTAAAATGGT
ATGTTCATTGGATCCCTATAGGATTTGAGTTTGTTTGATTGTGTCAAAGAAAAACAAAGGATTCCTTCTAAGAGGTTTGA
GTGGATGTTAGAATTTTTGTGAAATATAATACAAATGAATCTTTAGGAAAAAAAATCTACATGATTCAATTCTACGAATC
AAACGATCAATATAGGAAAAATTCCTAAGAATTATAATCCTTCAAAGATCCTACGAAAATTCTTTAAATCAAAGAGACCC
TCAGTTAGCATGTATCTACACGACTGTATCAACGTATCACTGTTTAATGATTGGCCCAACCTTAGGGCTCCTTTGATTCA
TCATAGGATTTTATTAAGCATCAGAATCATTATAAATCTTTCCTACATTGATTGTTTGATTCATATAGAATGGAGTCCTG
TAATTTTTTTTGCCAGGGATTTGCATCCAATTAATTTATTTTAAAATAATTTTTTATTTCCTATGATGCAATCAAACACC
AAAAATGATGTATATATTTTTTCGACGAAAATGATGTACAATTGAGACGAGTGTAACATTTTAATTCTATGTTTTTTCTA
TCTTCTGTTTTTTTTAACACAGTACACACGCTAATATGTACATACACTTATTTCTATGAATGCATTGCCATAGACATTTT
CATGAACGTAAATTGCCC
>chr7D_5
----TTTTTTGTTTCTCTATTTGTTTTTC----TTTTTTCCTGC--TTTTTCATAAAAATGTTCAAAATTTGTTTGCATT
TTCAAAAATTGTCCCGAAGTTTCAAAAG---GTATTCTCAAAATTTAAAAAATGTTCGTGTTTTTTGCAAAAAGTTTTCA
GAAAATGCAAAACG-AAAC----------ATATTCGAAATTTGTTTGCCTTTCCAACAAATGGCAGGATTTTTTCAAATA
AAAGATTGCATTTTTATAAAACAA--AATCGTGTTTTACAAAAATTTGTTCAGAGATTTCAGAAAATGTTCTGGATTTCA
AATTTTTGGTCACGTATTCAAAAAATGTTTGTGCTTCCAAATTTGTTTGGGATTTTCAAAATTGTTCTTGGTTTCAAAAT
TTGTTCTCCAA-TT-TAAAAAATGTTCGTTCTTCAGAAAATTGTTCACAAATTCTGTAAATGTTCATGTTTTCGAAAAGT
G-TTTGGGAAATACAAAATGTGTTTGCGATATCATAAAATTGTTTG-TTTTGTCAAAACAAAATCGTACCTTAAAAAATT
TAATTAAAAGTTGGAAAATGGTAAAGGATTTTTTTC--------------------------------------------
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>chr6A_9
--------TTTTTCCTTTTTTCTATCTCTCTGTTTTTGTCCTGCTTTTTTTCATAAAAATGCTCAAAATTTGTTTGCATT
TCAAAACTTTGTTCGCAAG-TTGAAAAG---GCATTCTCAAAATTTTAAAATTGTTCACATTTTTG--CAGGGA-GTACA
AAAGATGCAAAAT--AAAAAATGTTCAAAATATACGAAATTTGTTTGCCTTTCCAACC-----CATGATTTTATAAAATA
AAAGATTGCATTTTTATCAAAAAA--TGTTTGTGTTTAACAAAATTTGTTCAAAGATTTCAAAAAATGCTCTGGATTTCA
ATTTTTTGTTCATGTATTCAATAGATGTTTGTGCTTCCAAATTTGTTTGGAATTTTCGAAAATGTTCTCTGTTTCAAAAT
TTGTTCTCAAA-TTTTAAAAAATATTCGTGCTTTAGAAAATTGTTCACAAATTCTAAAAATGTTCATATTTACGAAAAAT
G-TTT-GGAAATTCAAAATTTGTTCGTGATATCATAAAATTAATTGCTTTTGTCAAGAAATAATCATACATACAAAAATT
TAATTAAAATTTTAAAATTTGTAAAGGATATTTT----------------------------------------------
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>chr5A_23
----------------------TTTTTTC----TTTTGTCCTAC-TTTTTTCATAAAAATGTTCATCATTTGTTCGCATT
CCGAAAAGTTGTTCGCAAG-TTGAAAAA---GCATTCTCAAAATTTTTAAAATGTTCATAGTTTTG--CAAGAA-GTTCA
AAAAATGCAAAAT--AAAAAATGTTCAAAATATACGAAATT-GTTTGCCTTTCCAACCT-----AGGATTTTATAAAATA
AAACATTGCATTTTA--AAAAAAA--TGTTCGTCTTTTACAAAATTTGTTCAAAGATTTCAAAAAAAATTCTGGATTTCA
ATTTTTTGTTCGCATATTCAATACATGTTTTTGCTTCCAAATTTGTTCGGCATTGTGAAAAATGTTCTCTGTTTCAAAAT
TTGTTCTCAAA-TTTTTAAAAATGTTCGTGCTTTAGAAAATTGTTCACAAATTCTAAAAATATTCATGTTTACGAAAAAT
G-TTT-GGAAATTCAAAATTTGTTCGTGATATCAAAAAATTGATTGCTTTTGTCAAAAAATAATCGTATGTTCAAAAATT
TAATAAATTTTTTGAAATTTGTAAAGGATTTTTTTC--------------------------------------------
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>chr7A_23
----------------------TTTTTTC----TTTTGTCCTGC-TTTTTTCACCAAAATGTTCAAAATGTGTTCGCGTT
TCCAAAAATTGTTAGGAAGTTTCAACAA---ATATTCTCACAATTTAAAAAATGTTCGCATTTTTG--CAAAAAATGTCC
AAAAAGGCAAAATTAAAAAAATGTTCAAAATATTCGAAATTTGTTTGCCTTTCAAACAAATGCCAGGATTTTTTCAAATA
AAAGATTGTGTTTTTGTAAAAAAATATGTTCGTGTTTTACAAAATTTGTTCAAAGATTTCAAAAAAATTTCTGGATTTCA
AAAGTTTGTTCACATATTCAAAAAATGTTTGTGATTCCAAATTTGTTTAGTATTTTTGAAATTGTTCTTCGTTTCAAAAT
TTGTTCTCATA---------------------TTATAAAGTTGTTCAAAAATTCTAAAAATGTTCACGTTTTTTAAAAGC
GTTTT-GGAAATCCTAAATTTGTTCGCAATATCATAAAATTGTTTGCCTTGGTCAAAAAAAGTTCATACGTTCAAAAAAT
TAATTAAAATATGGAAAATTGTAAAGGATTTTTT----------------------------------------------
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>chr1D_751
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---------------------------------------------CAAGTCCGCAGCCATCGCCCGCCACGTCACCGATC
CGCAACTCTCATCTCAGAAAACATCCGCTCTCCCTTCCTAATCCAACGCTGCGCAACCACCATCCCACGGATCGATCTCC
TCCCTGTGTTTCTCCCAGCCACGTCACCGATCCTCGCCTAGCTCCCTCCACGAATCAGACGCTCGGAACCCAGCATCCCA
CGGATCCGTCCCAAAGCCCCTCTCCGGTATAAAAGAACCACCACCGTTCAACCTCCACCGCATCAGACATC-------CA
ATCCCCAATCCCCTCCAATCCCACCTTCGGAACAGCAGCCAGCAAGCGTCGCCAGCCATGTCGGGCCGCGGCAAGGGAGG
CAAGGGCCTGGGAAAGGGCGGGGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGA
TCCGGCGGCTGGCGCGGCGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATC
TTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGT
CTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGAGCGCGGTTCGTGCCTCGCGTGGGATTTAGAT
GTGGTTAGGCGGGTCGTCGTTCTGTGGT--GTGCTTGTCCTGTGTGTGCGTGTGCAGCTGCGTGCTGGTGCTTGTAATGA
GTTCCAGATTCTAATATGGGTGTTCATCTCGCATTGGATTGAATCATGTGT-----TCTGCTCTGACCACTGGCGATGTC
TGTCCCTGCACGCTTCTAACATTAGGCCGTTTGTTTATACTGTCTAGTATGTTGAATGCGGAGTTTATAACCGTTGATGA
ACCACTGTTCGTTAGATTAGAGCCCTCCTACGGCGGTTTGTTTGACGAATCCAGAGTTCAGAACTGTCGATGAATCACTG
T------------------------------CGCGAGCTGAATGCTGAACTCAGTAGAACAGGGGTGATTGTTGGCAAGA
ATAGTTCACACG--------------------------------------------------------------------
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-----------------ACACGACTGTATCAA--------------------------ACCTTAGGGCTCCTTTGATTCA
TCATAGGAATTTTTA-----------------------------------------------------------------
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>SNPs
SSSS---S------S-----S-------S-------------S--------------------S----------------
-S-------SS--S-S-SS-----S---SSS------------S--------SSS-S-S---------------------
--------------------------------------------------------------S-----------SS--S-
-------S--------------------S----------------------------------S------S---------
-----------------------SS---------------------S----S--------------S---S--S------
--S--------S---------------S-----------------S--------------------------S------S
-------------S----------------------------------S------------SSS--SS-SSS---SSS--
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---------------------S--
----S----S-------S----------S----S----------------S-----------------------------
----------------------------------S--SS-----S------------SS--------------------S
-----------------------------------------------------------------------SSSSSSS--
------------------------------S-------------------------------S-----S-----------
---------------------S----------------------------------------------------------
----------------------------------------------S-----------------S---------------
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---------------------------------------S-----------SS--S------------------------
----------------------------SS----------------------------------------S---------
----------S----------------------------------S-----SSSSS----S---------------S---
----------SS----S-------------------S----S-----------------S-----------S------S-
---------------------S--S----S-S-------------S------------S---S-----------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------S---------------------------S-S---
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------SSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
--------S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_557
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---------------------------------------------------------AAAATCGCACGCTCGAAAGG---
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>reverse_1772
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-----------AATGGTTGGGCGGATGGTAG-------------------------------------------------
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