>input_sequence_76291
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-----------------------ATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGCGAT
GACGAGAAGCAGGTGAAAAGGAGGACCAGGAAACCCAGGCCGAAGAAGGTGGTGGAGCAACCAGAGGAGCCTCAGGACAA
TGGCAGGGAAGTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCT------TTTCCGCCACCCATGTACCTAC
CAGTGACCCCTGCTCCTCCACCACCGTCTCCTGCAATCCAGGTGGTGGAAGCCATACGCGCCGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGGCGATGCGCGAGGAGCTTACCAAGAGGGCCAAGGAGCTGCATGACAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCGCCATGCACCGACGAGAGGGCGGGCTGCGCCGAGTGCTACAGGAGCAACG
TGCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCTTGCGTTCGCATGGCGAGGCGGGGCGGTGCCACC
ATGGGAGCTGCTC------------------AGTAG--------------------------------------------
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-------------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G010300
CCCTAGCCGGCCACCTGCCAGCCGGCCAGCGGTCGCTCCACGCCGGCAGGCCACAGCGGCCAGTTCCCAGTCGCCGGTGC
CCCACGCCCACGCTCAGCCGTCCGTGGTCGCAAGTCAAAGGGGAAAAGGATTCTGGAGTATGGAGTTGGTCGCTGCATCC
AGGGCTCCAGGCATCGTAGACTAGTCCTAGTTGATAAGTGGGCCTGTGGGCTGTATGTATACATAGGGGTAGTAAAAAAA
ATTCATTTTTGCTGGGGGGGCGACGGCCCAGGTTCGCCCCCACGAAGCTCCGCTGTTGCTCCTGCCAATGTTTCCGGGTC
TGCTCCGGACAATGTTTCGGCCTCCGGACAATGCTCCGGACAAGTTTATGATCTGGCTGGCTAACCCCTATCCAAAATTA
CCAGATCTTTCTTCATCTCCAATCCATTCATCCATTCAGTTTATTACTGATGGAACTGTTTGCCGCCTTTCCCTTCCATG
GTGGAGTACCA--------------------AGTATATTTTCCAATTAAAAATCCATCCACTCCTCAATAAGTATGGACT
AGTATTTGTTTTCTGTTAGAACAGCCAGGAGAGCTGCTGTGTCTTGAATGTTGCAAAACATCAGGTTTTTGTTTTT----
-----TTAGTTTGTACATGTTTCTTTAGTCTTTATTAGGATAT-ATAAAAGATTGAAAAATGAAATGGTGACCATGCTAA
TTGATCCCTGACCTTTTAACTGGAAAGTATTCTACAACCGTGGATGCCCTGCCCTCATGTTGTTAATGTAGAATTCAGGG
TGGAGCCCAGATAT---TCATTTTGTTATTTAATTTAACATGCATCCATGAGACCTTCAATTTTCGAACTG---GAAAGC
TTTCATGTTCAAGATTTGTGCGATTTTGTTGTTAATGCACACCATTCAC------------------------TCTGCTT
GACATGCTTGGGACCTTTGTTTACTTGAATTGACCTCCT--TAAATCTTGCTG-TTAATCCCTGACTTTTGCTTGTGATG
CTGCTTCAGGATTCTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGCGAT
GACGAGAAGCAGGTGAAAAGGAGGACCAGGAAACCCAGGCCGAAGAAGGTGGTGGAGCAACCAGAGGAGCCTCAGGACAA
TGGCAGGGAAGTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCT------TTTCCGCCACCCATGTACCTAC
CAGTGACCCCTGCTCCTCCACCACCGTCTCCTGCAATCCAGGTGGTGGAAGCCATACGCGCCGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGGCGATGCGCGAGGAGCTTACCAAGAGGGCCAAGGAGCTGCATGACAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCGCCATGCACCGACGAGAGGGCGGGCTGCGCCGAGTGCTACAGGAGCAACG
TGCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCTTGCGTTCGCATGGCGAGGCGGGGCGGTGCCACC
ATGGGAGCTGCTC------------------AGTAGTA-------------------------------GCTGAGTGAGC
GAGGTGTCGTACACACGATTTTGCTTCTGTCGGGATTGAT-----------------------------TGATCGAATAA
CCTGAATGGATTTTT----G----GTGAGACCTGAAACACCATCAGTTGTAGATTAA--TTCTGGTAACGGATTGCTACT
GGTGTTGGCAACAAGAGGCCATGAGTGTCCTTGA---ATTTGGGGC-GTGGCTCCATGC----TACTTGCATACTACAAA
ATGAAACATGAATTT-GCAGGGTTCAAAATTAATGTTTACTACATGCATTCTGCTGCAAAATTTGCGGGGTTCCTTGGAT
TTTA--------------------------GTCCGTTTGTTTGGGATGAGTC-TGAATAACCATTGTATGTTGATTCTTC
CACGTCGCATA----CATTGTG----------------------------------------------------------
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-----------------------------------------------------------CTGCAAAATGAAACATGAATC
GCGGGTG---CAAATTAATATGATTTAGCTTCAGCTGCGGCATGC-----------------------------------
---------------------------------------------------TTTTTGCGGGATAAAAAAATCAC------
-----------------CTGCTGCTGCTTTGCTGGTTATTGGTAAAATCCATGTCTGAGTGGTTGATAAA-AAA------
-----------------TTATGGAACCTTGTATATGTTGT------TAGGCATAAATATTTGGGTAAAACAA-A--CATC
TTGTATC-CTCCCCAGTCTTTTGGTGTACAAATTAAATATTGTATGGTGCAAGAAGCTA-----TTCAGATACAACAACA
CTGGGCTACATGACAGGAATGGTGTAC-----ACGCCCCAAGGGCCAGCAGGCAACAGCAAACCAGAACAAAGATGAGAT
GGTCTTGGCCTAGGATGTTGATTCAGAGATGCTCGACTCGACGCCAAGCAGCAGCAGCCGCCCTACACATGCCA------
---TTCTCGATGG-----AGAGCGACTGCAGCACAGTTAAGTTGTAGAAGCAATCACATGCCATTCCTCTAGCAGAGCAG
AACAGAGCAGTGCAAGAATCAGGGATCAGGCCTGTCATTGAATAGAAGCTGAATGAC------CTTCAGCTCCGGCAGGC
CTGCCTCCGCTCACGGACTAGCCTCGGTATTTCCTTCCATGTCTTCGGTTTCAATGGTTTGAATTCCGTTACTGCACAC
>chr1B_395
AAATTCAT------------------------------------------------------------------------
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CCAGATCTTTCTTCATCTCCAATCCATTCATCCATCCAGTTTATTACTGATGGAACTCCAGATCTCCATTCACC------
----------------------------------------TCCAATTAAAAATCCATCCACCCCTCAATAAGTATGGGCT
AGTATTTGCTTTCTGTTATAGCAGCCAGGAGCTCTACTGTTTCTAGAATGTTGCAAAACATCAGGTTTTTGTTTTTTGT-
----TTTACTTTGTACATGTTTCTTTATGCTTTATTAGGATAT---------TTGACAAATGAAATGGTAACCATGCTAA
TAGATCCTTGACCTTTTAATTGGAAAGTATTCTACAACTGTGGATGCCCTGCCCTCATGTTTTTACTGTAGAATTCAGTG
TCAAGCCCAGATAT---TCATTCTGTTGTTTAA-----CAGGCAT---------------------------------GC
TTGCGTGTTCAAGATTTCTGCGATTATGTTGTTAATGCACACCATTCATTCAATATAGGGCCCAGCAATTCATTCTGTTT
AACATGCTTGGGAGCTTTGTTTGCTTGAATTAACCTCCT--TAAATCTTGCTG-TTAATCCCTGACTTTTGATTGTGATG
CTGTTTCAGGATTCTCGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGCGAT
GACGAGAAGCAGGTGAAAAGGAGGACCAGGAAACCCAAGCCGAAGAAGGTGGTGGAGCAACCAGAGCAGCCTCAGGACAA
TGGCAGGGAACTTCCAAGTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCT------TTTCCGCCACCCATGTACCTAC
CAGTGACCCCCGCTCCTCCACCACAGTCTCCTGCAATCCAGGAGGTGGAAGCCATACGCACCGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAAAAGCTGCAGAAGAAGGAGGCGACGATGCGCGAGGAGCTCACCAAGAGGGCCAAGGAGCTGCATGACAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCTCCGTGCACCGACGAGAGGGCCGGCTGCGCCGAGTGCTACAGGAGCAACG
TACAGGACCCGCTCAAGTGTGCCGAGGCGGTCAAGAGGTTCGAGGCGTGCGTTCGCATGGCGAGGCGGAGCGGTGGCGCC
ATGGGAGCTGCTC------------------AGTAGGCAGTAGCGCTGGAGGAGGGGTTGCGAGTCGGAGC-GAGTGAGC
CAAGTGTCGACCACACGATTTTTCTTCTGTCGGGATTGAT-----------------------------TGATCGAATAA
CCTGCCTGGATTTTT----GTTTGGTGAGACCTGAAAAACCATCAGCTGTAGATTAA--TTCTGGT--------------
--------------GATGCCATGAGTTTCCTTGA---ATTTAGGGT-GTGGCTCCATG----TTAATTGCATACTACAAA
ATGAAACATGAATT------------------------------------GTGCTGCAAAATTTGCAGGGTTCCTTGGAT
TTTA--------------------------GCCCGTTTGTTTGGGATGAGTTT-GAAACACAGTTGTATGTTCATTCTTC
CGTGTCACATAAGTACATTGTG----------------------------------------------------------
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-----------------------------------------------------------CTGCAAAATGAAACATGAATC
GCGGGTG---CAAATTAATGTGATTTAGCTTCTGCTGCGGCATGT-----------------------------------
---------------------------------------------------TTTTTGCGGGATCAATAAAAATCTCCTGA
TGATGCTGCTGCTGCTGCTGCTGCTGCTTTGCTGGTTATTGGTAAAATCCATGTCTGAGTGGTTGATAAA-AAA------
-----------------TTATGGAACCTTGTATATGTTGT------TAGGCATAAACGTTGGGGTAAAAAAA-TATCATC
TTGGTCCACTGCCCAGTCTTTTGGTGGACAAAAG----ATTGTATGGTGCAAGAAGCTACAGTGTTCAGATACAACAAC-
---------------------------------CACCCCAAGGGCCAGCAGGCAGCAGCAAACCAGATCAA-GATGAGAT
GGTCTCAGCCTAGGATGTTGATTCAGAGATGCTCGACTCGACGCCAAGCAGTAGT---CGCCC--------------CGA
CAGTTGTCGACCA-----AGAGCGACTGCGGCACTGTTCAGTTGTAGAAGCAATCA------------------------
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>chr1A_405
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----ATATTTCTTCATCTCCAATCCATTCATCCATCCAGTTTGTTACTGATGGAACTGTTTGCCGCCTTTCCCTTCCATG
GTGGAGTACTAAGTAGTAAAAGCACTCAGTCAGTATATTTCCCAATCAGAAATTCATGCACCCCTCAGTAAGTATGGGCT
AATATTTGCGTTCTGTTAGAGCAGCCGGGAGCTCTGCTGTTTCCTGAATGTTCCAAAAAATCAGTTTTT---------T-
----TTTACTTTGTACATGTTCCTTTATTCTTTATTAGGATATAATAAAAGATTGACAAATGAAATTGTGGCCATGCTAA
TAGATCCTTGACTTTTTAACTGGAAAGTATTCTACAACTGTGGATGGCATGCCCTCATGT-GTTAATGTAATATTCAGTG
TAGAGCCCAGATATTAATCATTCTGTTATTTAA-----CAGGCATCCATGAGGCCTTCAATTTTTGAACTG---GAAAGC
TTGCGTGTTCAGGATTTGTGCGATTATGCTGTTAATGCACACCATTCATTCAGTATAGGGCCCAGCAATTCATTTTGTTT
ATCGTGCTTGAGACCTTTGTTTGCTTGAATTAACCTTCT--TAAATCTTGCTG-TTAATCCGTCACTTTTCCTCGTGATG
CTGTTTCAGGATTCTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGCGAT
GACGAGAAGCAGGTGAAAAGGAGGACCAGGAAACCCAGGCCGAAGAAGGTGGTGGAGCAACCAGAGGAGCCTCAGGACAA
TGGCAGGGAAGTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCT------TTTCCGCCACCCATGTACCTAC
CAGTGACCCCTGCTCCTCCACCACCGTCTCCTGCAATCCAGGTGGTGGAAGCCATACGCGCCGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGGCGATGCGCGAGGAGCTTACCAAGAGGGCCAAGGAGCTGCATGACAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCGCCATGCACCGACGAGAGGGCGGGCTGCGCCGAGTGCTACAGGAGCAACG
TGCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCTTGCGTTCGCATGGCGAGGCGGGGCGGTGCCACC
ATGGGAGCTGCTC------------------AGTAGTA-------------------------------GCTGAGTGAGC
GAGGTGTCGTACACACGATTTTGCTTCTGTCGGGATTGAT-----------------------------TGATCGAATAA
CCTGAATGGATTTTT----G----GTGAGACCTGAAACACCATCAGTTGTAGATTAA--TTCTGGTAACGGATTGCTACT
GGTGTTGGCAACAAGAGGCCATGAGTGTCCTTGA---ATTTGGGGC-GTGGCTCCATGTGT-TTACTTGCATACTACAAA
ATGAAACATGAATTT-GCAGGGTTCAAAATTAATGTTTACTACATGCATTCTGCTGCAAAATTTGCGGGGTTCCTTGGAT
TTTA--------------------------GTCCGTTTGTTTGGGATGAGTC-TGAATAACCATTGTATGTTGATTCTTC
CACGTCGCATACATTTTTGCGGGATAAAAAAATCACCTGCTGCTGCTTTGCTGGTTATTGGTAAAATCCATGTCTGAGTG
GTTGATAAAAAAATCCATGTCTGAGTGGATAAAAATTATTGAACCTTGTATAAATGTTGGGGTAAAAAAAATTCATCTTG
TTATCATCATCCAAGAAGTTCTCGATGGAGAGCGACTGCGGCACAGTTGTCTTGTAGAAGCAATCACAGGCCATTCCCCT
AGCAGAGCAGTGCAACAATCAGGGATCAGGCCTGTCATTGAATAGAAGCTGAATGACCTTCAGCTTCAGCTCCGGCAGGC
CTGCCTCCGCTCACGGACTAGCCTCGGTATTTCCTTCCATGTCTTCGGTTTCAATGGTTTGAATTCCGTTACTGCACATA
CCACAAGCGATGTCAGAAAAAAAAACTTGTACAAACTAATGTGTTATATCATAATGTATAGCATGATGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTCAGGATTCTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGC
GCGATGACGAGAAGCAGGTGAAAAGGAGGACCAGGAAACCCAGGCCGAAGAAGGTGGTGGAGCAACCAGAGGAGCCTCAG
GACAATGGCAGGGAAGTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCTTTTCCGCCACCCATGTACCTACC
AGTGACCCCTGCTCCTCCACCACCGTCTCCTGCAATCCAGGTGGTGGAAGCCATACGCGCCGTGGTGGCGGAGAGCGAGA
AGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGGCGATGCGCGAGGAGCTTACCAAGAGGGCCAAGGAGCTGCATGACAAG
GAGTTCAAGCTGCCCTACCAGAACCCCTCGCCATGCACCGACGAGAGGGCGGGCTGCGCCGAGTGCTACAGGAGCAACGT
GCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCTTGCGTTCGCATGGCGAGGCGGGGCGGTGCCACCA
TGGGAGCTGCTCAGTAGTAGCTGAGTGAGCGAGGTGTCGTACACACGATTTTGCTTCTGTCGGGATTGATTGATCGAATA
ACCTGAATGGATTTTTGGTGAGACCTGAAACACCATCAGTTGTAGATTAATTCTGGTAACGGATTGCTACTGGTGTTGGC
AACAAGAGGCCATGAGTGTCCTTGAATTTGGGGCGTGGCTCCATGTGTTTACTTGCATACTACAAAATGAAACATGAATT
TGCAGGGTTCAAAATTAATGTTTACTACATGCATTCTGCTGCAAAATTTGCGGGGTTCCTTGGATTTTAGTCCGTTTGTT
TGGGATGAGTCTGAATAACCATTGTATGTTGATTCTTCCACGTCGCATACATTTTTGCGGGATAAAAAAATCAC------
-----------------CTGCTGCTGCTTTGCTGGTTATTGGTAAAATCCATGTCTGAGTGGTTGATAAA-AAAATCCAT
GTCTGAGTGGATAAAAATTATTGAACCTTGT--------------------ATAAATGTTGGGGTAAAAAAAAT-TCATC
TTGTTATCATCATCCAAGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AGTTCTCGATGG-----AGAGCGACTGCGGCACAGTTGTCTTGTAGAAGCAATCACAGGCCATTCCCCTAGCAGAGCAG
T----------GCAACAATCAGGGATCAGGCCTGTCATTGAATAGAAGCTGAATGACCTTCAGCTTCAGCTCCGGCAGGC
CTGCCTCCGCTCACGGACTAGCCTCGGTATTTCCTTCCATGTCTTCGGTTTCAATGGTTTGAATTCCGTTACTGCACA-
>chr1B_405
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----ATATTTCTTCACCTCCAATCCACTCATCCATCCAGTTTGTTACTGATGGAACTGTTTGCCGCCTTTCCCTTCCATG
GTGGAGTACTAAGTACTAAAAGCAGTGAGTCAGTATGTTTTCCAATTAAGAATCC------------------ATGGGCT
AGTATTTGCTTTCTGTTAGAGCAGCCAGGAGAACTGCTGTTTCTTGAATGTTGCAAAACATCAGGGTTTTTTTTTC----
-----TTGCCTTCTACATATTCTTTTATATGTTTAGG----AT-ATAAAAGATTGACAAATGAAATGGTGACCATGCTAA
TAGATCCTTGACCTTTTAATTGGAAAGTATTCTACAACTGTGGATGCCCTGCCCTCATGTTGTTAATGTAGAATTCAGTG
TAGAGCCCAGATAT---TCATTCTGTTAATTAA-----CCGGCATCCATGAGGCCTTCAGTTTTTGAACTG---GAAAGC
TTGTGTGTTCAAGACTTGTGCGATTATGTTGTCAATGCACGCCATTCATTCAGTACAGGGCCCAGCAATTCATTATGTTT
AACACGCTTGAGACCTTTGTTTGCTTGAATTAACCTCCTTATAAATCTTGCTG-TTAATCCCTGACTTTTGATTGTGATG
CTGTTTCAGGATTCTTGTTTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGAGAT
GACGATAAGCAGGTGAAGAGGAGGACCAGGAAACCCAAGCCGAGGAAGGTCGTGGAGCAACCAGAGGAGCCTCAGGACAA
TGGCAGGGAACTTCCAACTGAACCCAAGAGCAGCCCCGCTCCTGTTCTGCCT------TTTCCACCACCCATGTACCTAC
CAGTGACCCCCGCTCCCCCACCACCGTCTCCGGCGATCCAGGAGGTGGAAGCCATACGCACGGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGACGATGCGCGAGGAGCTCACCAAGAGGGCCAAGGAGCTGCATGACAA
GGAGTTCAAGCTGCCATACCAGAACCCTGCACCGTGCACCGACGAGAGGGCCGGGTGCGCCGAGTGCTATAGGAGCAACG
TGCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCGTGCGTTCGCATGGCGAGGCGGGGCGGTGCCGCC
ATGGGAGCTTAGCAATGGGAGAGGGGTTGCGAGTCGGA-------------------------------GCTGAGTGAGC
GAGGTGTCGAGCACACGATTTTGCTTCTGTCGGGAT-GAT-----------------------------TGATTGAATAA
TCTGCCTGGATTTTT----GTTTGGTGAGACCTGAAACACCATCAGCTGTAGATTAA--TTCTGGT--------------
--------------GATGCCATGAGTTTCCTTGA---ATTTAGGGT-GTGGCTCCATG----TTAATTGCATACTACAAA
ATGAAACATGAATT------------------------------------GTGCTGCAAAATTTGCATGGTTCCTTGGAT
TTTA--------------------------GCCCGTTTGTTTGGGATGAGTTTTGAGTAACCATTGTATGCTGATTCTTC
CGTGTCACATAAGTACATTGTG----------------------------------------------------------
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-----------------------------------------------------------CTGCAAAATGAAACATGAATC
GATGGTG---AAAATTAATGTGATTTAGCTTCTGCTGCGGCATGT-----------------------------------
---------------------------------------------------TTTTTGCGGGATCAATAAAAATCTCCTGA
------TGCTGCTGCTGCTGCTGCTGCTTTGCTGGTTATTGGTAAAATCCATGTCTGACTGGTTGACAAA-GAA------
-----------------TTATGGAACTTTGTATATGTTGT------TAGGCATAAATGTTGGGGTAAAAAAAATATCATC
TTGGTGCACCGCCCAGTCTTTTGGTGGACAAAAG----ATTGTATGGTGCAAGAAGCTACAGTATTCAGATACAACAAC-
---------------------------------CACCCCAAGGGCCAGCAGGCAGCAGCAAACCAGATCAA-GATGAGAT
GGTCTCAGCCTAGGATGTTGATTCAGAGATGCTCGACTCGACGCCAAGCAGTAGT---CGCCC--------------CGA
CAGTTGTCGACCA-----AGAGCGACTGCGGCACAGTTCAGTTGTAGAAGCAATCA------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr1A_408
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-------TTTCTTCATCTCCAATCCATTCATCCATCCAGTTTGTTACTGATGGAACTGTTTGCCGCCTTTCCCTTCCATG
GTGGAGTACTAAGTAGTAAAAGCACTCAGTCAGTATATTTCCCAATCAGAAATTCATGCACCCCTCAGTAAGTATGGGCT
AATATTTGCGTTCTGTTAGAGCAGCCGGGAGCTCTGCTGTTTCCTGAATGTTCCAAAAAATCAGTTTTT---------T-
----TTTACTTTGTACATGTTCCTTTATTCTTTATTAGGATATAATAAAAGATTGACAAATGAAATTGTGGCCATGCTAA
TAGATCCTTGACTTTTTAACTGGAAAGTATTCTACAACTGTGGATGGCATGCCCTCATGT-GTTAATGTAATATTCAGTG
TAGAGCCCAGATATTAATCATTCTGTTATTTAA-----CAGGCATCCATGAGGCCTTCAATTTTTGAACTG---GAAAGC
TTGCGTGTTCAGGATTTGTGCGATTATGCTGTTAATGCACACCATTCATTCAGTATAGGGCCCAGCAATTCATTTTGTTT
ATCGTGCTTGAGACCTTTGTTTGCTTGAATTAACCTTCT--TAAATCTTGCTG-TTAATCCGTCACTTTTCCTCGTGATG
CTGTTTCAGGATTCTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGCGAT
GACGAGAAGCAGGTGAAAAGGAGGACCAGGAAACCCAGGCCGAAGAAGGTGGTGGAGCAACCAGAGGAGCCTCAGGACAA
TGGCAGGGAAGTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCT------TTTCCGCCACCCATGTACCTAC
CAGTGACCCCTGCTCCTCCACCACCGTCTCCTGCAATCCAGGTGGTGGAAGCCATACGCGCCGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGGCGATGCGCGAGGAGCTTACCAAGAGGGCCAAGGAGCTGCATGACAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCGCCATGCACCGACGAGAGGGCGGGCTGCGCCGAGTGCTACAGGAGCAACG
TGCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCTTGCGTTCGCATGGCGAGGCGGGGCGGTGCCACC
ATGGGAGCTGCTC------------------AGTAGTA-------------------------------GCTGAGTGAGC
GAGGTGTCGTACACACGATTTTGCTTCTGTCGGGATTGAT-----------------------------TGATCGAATAA
CCTGAATGGATTTTT----G----GTGAGACCTGAAACACCATCAGTTGTAGATTAA--TTCTGGTAACGGATTGCTACT
GGTGTTGGCAACAAGAGGCCATGAGTGTCCTTGA---ATTTGGGGC-GTGGCTCCATGTGT-TTACTTGCATACTACAAA
ATGAAACATGAATTT-GCAGGGTTCAAAATTAATGTTTACTACATGCATTCTGCTGCAAAATTTGCGGGGTTCCTTGGAT
TTTA--------------------------GTCCGTTTGTTTGGGATGAGTC-TGAATAACCATTGTATGTTGATTCTTC
CACGTCGCATACA-------------------------------------------------------------------
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---------------------------------------------------TTTTTGCGGGATAAAAAAATCAC------
-----------------CTGCTGCTGCTTTGCTGGTTATTGGTAAAATCCATGTCTGAGTGGTTGATAAA-AAAATCCAT
GTCTGAGTGGATAAAAATTATTGAACCTTGT--------------------ATAAATGTTGGGGTAAAAAAAAT-TCATC
TTGTTATCATCATCCAAGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AGTTCTCGATGG-----AGAGCGACTGCGGCACAGTTGTCTTGTAGAAGCAATCACAGGCCATTCCCCTAGCAGAGCAG
T----------GCAACAATCAGGGATCAGGCCTGTCATTGAATAGAAGCTGAATGACCTTCAGCTTCAGCTCCGGCAGGC
CTGCCTCCGCTCACGGACTAGCCTCGGTATTTCCTTCCATGTCTTCGGTTTCAATGGTTTGAATTCCGTTACTGCACA-
>chr1D_501
--------------------------------------------------------------------------------
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----------------------------------------TCCAATAAAAGGTCCATACACCCCTCAATAAGTATGGGCT
AGTATTTGCTTTCTGTTATAGCTGCCAGGAGAACTGCTGTGTCTTGAATGTTGCAAAACATCAGGTTTT---------TG
TTTTTTTAGTTTGTACATGTTTCTTTATTCTATATTAGGATATA-TAAAAGATTGGCAAATGAAATGGTGACCATGCTAA
TAGATCCTTGACCTTTTAATTGGAAAGTATTCTACAACTGTGGATGCCCTGCCCTCA---------------------TG
TAGAGCCCAGATAT---TCATTCTGTTATTTAA-----CAGGCATCCATGAGGCCTTCAATTTTTGAACTGGAAGAAAGC
TTGCGTGTTCAAGATTTGTGCGATTATGTTGTTAATGCACACCAATCATTCAGTATAGGTCCCAGCAGTTCATTCTGTTT
AACATGCTTGAGACCTTTGTTTGCTTGAATTAACCTCCTTATAAATCTTGCTG-TTAATCCCTGACTTTTGATTGTGATG
CTGTTCCAGGATTCTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGAGCAGCTCGCGCGCGAT
GACGAGAAGCAGATGAAGAGGAGGACCAGGAAACCCAAGCCGAGGAAGGTCGTGGAGCAACCAGAGGAGCCTCAGGACAA
TGGCAGGGAACTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGTTTTGCCT------TTTCCGCCACCCATGTACCTGC
CAGTGACCCCCGCTCCTCCACCGCCCCCGCCCGTGATCCAGGAGGTGGAAGCCATACGCGCCGTGGTTGTGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGAAGGAGGCGACGATGCGCGAGGAGCTCACCAAGAGGGCCAAGGAGCTGCACGACAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCGCCGTGCACCGACGAGAGGGCAGGCTGCGCTGAGTGCTACAGGAGCAACG
TGCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGGTTCGAGGCGTGCGTTCGCATGGCGATTCGGGGCGGTACCACC
ATGGGAGCTGCTC------------------AGTAGGCAGTGGCGCTGG------------GAGTCGGGGCTGAGTGAGC
GAGGTGTCGAGCACACGATTTTGCTTCTGTCGGGAT-GAT-----------------------------TGATTGAATAA
CCTGCCTGGATTTTTGTTTG----GTGAGACCTGAAACACCATCAGTTGTAGATTAA--TTCTGGTAACGGGTTGCTACT
GGTGTTGGCAACAAGAGGCCATGAGTGTCCTTGA---ATTTAGGGGAGTGGCTCCATGCTACTTGCATACATATTACAAA
ATGAGACATGAAATTTGCAGGGTTCAAAATTAATGTCTACTGCATACATTGTGCTGTGAAATTTGCAGGGTTCCTTGGAT
TTTA--------------------------GCTCGCTTGTTTGGGATGAGTT-TGGATAACCATTGTATGTTGATTCTTC
CGTGTCGCATAAGTACATTGCG----------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------CTGCAAAATGAAACATGAATC
GCGGGTG---CGAATTAATGTGATTTAGCTTCAGCTGCGGCATGT-----------------------------------
---------------------------------------------------TTTTTGTGGGATCAAAAAAAAAAAATCAC
-----------CTGATGCTGCTGCTGCTTTGCTGGTTATTGGTGAAATCCATGTCTGAGTGGTTGATAAA-AAA------
-----------------TTATGGAACCTTGTATATGTTGT------TAGGCATAAATGTTGGGATAAAAAAA-T--CATC
TTGGTCTACTACCCAGTCTTTTGGTGGACAAAAG----ATTGTATTGTTCAAG---CTA-----TTCAGATACTACAACA
CTAGGCTACATGACAGGAATGTTGTAC-----ACACCCAAAGGGCCAGCAGGCAGCAGCAAACCAGATCAA-GATCAGAT
GGTCTCGCCCTAGGGTGTTGATTCAGAGATGCTCGACTCGACGCCAAGCAGTAGT---CGCCCTACACCGCAGGCACCGA
TAGTTCTCGACCG-----AGAGCGACTGCGGCACAGTTCAGTTGTAGAAGCAATACA-----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr5B_888
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------ATTCATTCTAC-----------------------TTT
GACATGCATGAGACTTTTGTTTCTTTGAA----CATCCA--TAACACTTGCTTTTTAATCCCTGATTTTTGATTGCCGTG
CTGTTTCAGGATTGTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGACCAGCTTTCGCGCGAT
GACGAGA---AGGTGAAAAGGAGGACCAGGAAACCCAAGCCGAAGAAGGTCGTGGAGCAACAAGAGGAGCCTCGGGACAA
TGGCAGGGAACTTCCAAGCGAGCCCAAGAGCAGCCCTGCTCCCGCTCCTGGGTGGGCGTTGCCGCCCCCCATGTACCTAC
CAGTGACCCCTGCTCCTCCACCACCCCCGCCGGCAATCCAGGAAGTGGAAACCATACACGCCGTGGTGGCGGAGAGCGAG
AAGGTGCTGGAGAAGCTGCAGAAGCAGGAGGCGACGATGCATGAGGAGCTTACCAAGAGGGCCAAGGAGCTGCACGAGAA
GGAGTTCAAGCTGCCCTACCAGAACCCCTCACCGTGCACTGACGAGAGGGCGGGCTGCGCCGAGTGTTACCAGAGCAACA
TCCAGGACCCGCTCAAGTGCGCCGAGGCGGTCAAGAGATTCGAGGCATGCGTCAGCATGGCGAGGCGGAGCGG---CACC
ATGGGGGCTGCTC------------------AGT---------------------------GAGTCGGAGC-AAGTGAGC
GAGGTGTCGTACACATGATTTTGGTT-TGTCGGGAT-GATTGAATAG---------------------------------
CCTGAATGGATTTTC----G----GTGAGACCTGAAACACCATCAGTTGTAGATTAAAATTCTGTCAAGGGATTGCACCG
GTGCTGG----CAAGATGCCATGAGTGTCCTTGATGAATTTAGGGC-CTGATTCCA--TGT-TTACTTGCATACTAGAAA
ATGAAACATGAATTT-GCATGGTTCG-AATTAATGTTT------------------------------------------
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-------------------------------------------------------------------------------
>chr5D_888
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-------------------------------------------ATTCATTCTAC-----------------------TTT
GACATGCATGAGACTTTTGTTTGTTTGAA----CATCCA--TAACACTTGCTTTTTAATGCCTGACTTTTGATTGCCATG
CTGTTTCAGGATTGTTGTCTGCCATGGGTGACTACACAATCCGGATAAGCACCAGCTTGATCGACCAGCTCACACGCGAT
GACGAGA---AGGTGAAAAGGAGGACCAGGAAACCCAAGCCGAAGAAGGTCGTGGAGCGACAAGAGGAGCCTCAGGACAA
TGGCCGGGAACTTCCAAGCGAGCCCAAGAGCAGCCCTGCCCCCGCTCCTGGGTGGGCGCTGCCGCCCCCCATGTACCTAC
CAGTGACCCCTGCTCCTCCACCACCCCTGCCGGCAATCCAGGAAGTTGAAACCATACGCGACGTGGTGGCGGAGAGCGAG
AATGTGCTGGAGAAGCTGCAGAAGCAGGAAGCGACGATGCGTGAGGAGCTTACCAGGAGGGCCAAGGAGCTGCACGACAA
GGAGTTCAAGCTGCTCTACCAGAACCCCTCGCCGTGCACCGACGAGAGGGCAGGCTGCACCGATTGCTACCGGAGCAACA
CCCAGGATCCGCTCAAGTGCGCCGAGGCGGTCAAAAGGTTCGAGGCGTGCGTTCGCATGGCGAGTCGG------------
ATGGGGGCTGCTC------------------AGT---------------------------GAGTCGGAGC-GAGTGAGC
GAGGTGTCGTACACACGATTTTGGTT-TGTCGGGAT-GATTGTATAACCTGAAAATCGGTTTGTCGGGATGATTGAATAA
TCTGAATGGATTTTC----G----GTGAGACCTGAAACATCATCAGGTGTAGATTAGAATTCTGGTGAGGTACTGCACCG
GTGCTGG----CAAGATGCCATGAGTGTCCTTGATGAATTTAGGGC-CTGATTCCA--TGT-TTACTTACATACTAGAAA
ACGAAACATGAATTT-GCATGGTTTG-AATTAATGTTTCCCGATGAGTATATTTAGGTAAAATGGCTGCTTTTCCTTGCA
ACGCCCTGGCATGTTTACATAAATAACCGTGCTCGTTTGTTAGGGATGAGTT-TGAATAACCATTATAGGTTGATTTAGC
TTCA----------------------------------------------------------------------------
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-GATGCACCTGTTGCTGCTGCTGCT--TTTGCTGGTTATTGGCAAAATCCATGTCTGAGTGGTTCATAAAGAAA------
-----------------ATGTGGAACCTTATATAGGTGTTATTTTATAGGCATAAATATTTC------------------
--------------------------------------------------------------TGTTGAGATACAACAACA
CTGGGGTACATGACAGGAATGTTGTACACAACACACCCCCAGGGCCAGCAGGAAGCAGCAAACCAGATCAA-GATCAGAC
CATCTCGGCCTAGGATGTTGATTCAGAGATGCTCGACTCGACGCC-----------------CTACACCGCAGGCCCCGA
CACTTCTCGACCAAGAGCAGAGCGACCGCGGCACATTTAAGTTGTAGAAGCAATAACA-GCCATTCCACTGGCAGAGCA-
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>chr1D_1977
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-----------------------------------------------------------GGATAAAAAAGATCAC-----
--------------------CTGCT--GCTGCTGGTTATTGGTAAAATCCATGT--GAGTGCTTGATAAA-AAA------
-----------------TTATGGAACATTGTATATGTTGT------TACACATAAATGTTGGGATAAAAAGA--ATCATC
TTGGTACACTGCCTAGTCTTTTGGTGGACAGAAG----ATTGTATGGTGCAAGAAGCTA-----TTCAGATACAACAACA
CTGGGCTACATGACAGGAATGGTGTAC-----ACGCCCCAAGGGCCAGCAGGCAGCAGCAAACCAGGTCAA-GATGAGAT
GGTCTGGGCCTAGGATGTTGATTCAGAGATGCCTGACTCGACGCCAAGCAGCAGC---CACCCTACACCGCAGGCCCCGG
CAGTTCTCGACCG-----AGAGCGACTGCGGCACAGTTCAGTTGTAGAAGCAATCACATGCCATTCCCCCAGCAGAGCAG
AACAGAGCAGAGCAACAATCAGGGATCAGGCCTGTCATTGAATAGAAGCTGAATGACCTTCAGCTTCAGCTCCGGCAGGC
CTGCCTCCGCTCACGGACTAGCCTCGGTATTTCCTTCCATGTCTTCGGTTTCAATGGTTTGAATTCCGTTACTGCACA-
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-----------------------------------S--------------------------------------------
---------S---------------------------------------------------S---------------S--
--------S-----------S-----------S-----------------------------------------------
---------------------------S----------------------------S-----------------------
-S-----S------------------------------S---------------------------------------S-
-S--------------------S----------SSSSS--S-----------S-----------S---------------
--S-S--------------------S----------------------S----------------------------S--
----------------------S--------S------------------------------------------------
---S----------------------------------------------------------------------------
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-------------------S------------------------S-----------------------------------
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---------------------------------------------------------------------S---S------
----SS--------------------S-----SSSSSS------------------------------------------
------------------------------------------------------S------------S---S--------
-----S-------------------------------------------------SSS----------SSSSSS------
-----------------------------S-------------------------------------S------------
----------S----S----------------------------------------------------------------
------------------------------------------------------------------------------S
>forward_390
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--------------------------------------------------ATCTGGCTGGCTAACCCCTA----------
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>reverse_3766
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-----TCCTCCCCAGTCTTTTGGTG-------------------------------------------------------
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-------------------------------------------------------------------------------
