>input_sequence_76276
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----------------------------------ATGAGGCCCGACGCCGGCGCCGCGGGGAGCATGGCGTCCATGGAGT
GGGAGCCGAAGGCGCTCTCCCTCCACGAGCTCAAGTACGCGAGGGTGAGGCACCGCCACCGAGGCTAGCTCAGCTCTC--
--------AATCTTTTAAGACAATTCTCTAAGATGTA---CTG-TATCCACTTCTGCAGGAGGCGGCGCTGTACGTCCTG
AGAACGCACTCCTCGGAGGACGCCGACCGGATCTTCACCGAGGTACGTGTATAGATGACCAGCT-TTGCATCCAGCACGT
AGTTCATCGTCGATCGGCCGGCTTCTGTCTCCCAGCTTTGTGATCGATCGACTAACCGAACCAGCTGGTATTTATGGAAC
TTGCTGCGTGCTGCAGGGCCTCAAGCCGGTGCTGGGCGTCAGGAGGGACTCCATGGCGGACTCCGACGAGGAGGATGACC
AGGGTGACGAGGACTACGACATGTTCAATCCCTACGCGTTTCTTGACGATGACGGTGTCTGCTGCCACCA---GTACGGA
CGCA---CCGCCGAGGAACGGGATGTTGCTACCGCACCTTTCTAA-----------------------------------
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>chr4B_1_TraesCS4B01G104200
AGATGCTCCTAAAAAAAACTTCGTCGCCTTC-AATAAAAAGGAGAAAAAGAAGACGATCTCGTCTACTTCCTGACCTTTG
AATAATCATGCGGTATCTGTCCATATCGCTCGACCCTCGGTACGTATATATGCAGCGAAAATATCGCGGGAAATCAGCAG
CTGAAGCAGACCGCCCAAATGCCCCATTTCGCACCAGGAAAAGGTGGCGTCCGGTGAAAAGGCTCCGCAGAAAGCGCAGG
GT---CTCGCGAAGCAACGGGCGCATCCCAGCCGCGCGCGTCGGCAGCGGCAGGATTACACGTCACGCT-ACACGAGGTG
GTAACCACATCGCCTCCTGCACCCGAGCCGAAGCCACGTGCCGGGCAGCTACTGGCCCAGACCGGCCGCGCCCCATGCAC
CGACGCCGC-----------------------------------------------------------------------
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---------------------------------------------------------------ATGCGGGTCGACGACTA
CGACACGGTGATGGCTCTCCACCCCCGGTTCTCCCCGCGTGTCACGACACCGCCACTCCACGACGTGTGCGCCTCCGCGG
TCGACACGTGTGGAGTTCGTGCTTACTTTCTCTTCGTCCGGCCGACGCCTCA----TCATGTTATAAATAGCGAACAGCA
GGCGGGGAAATATCCTGTGCTCCCGGGGCACTAGTGCTACCGGTGCTACGGGCTTTCGAGCCGTTGGATATGAGATCCAA
CAGATCTGAGGAGCTGTTGTATCTACACGCAATTTACGAACTCCTAAAGGTTTTTTTTGGAAAAATGTCTGACATTTGCT
GGGAACTCTTGGATCTGAGATCCGACGGACGAGCTCGCACGGGAGCATCTGGGCTTAGGTGCTCCGGGAGCACCAGATAT
TTTCCCCCGGCAGGGGAACTCGGATCTCTGCTTCACCACGCACCGCGACCAAGCACCGAAACCGTAGACACGCGCACA-C
ATTTC-CATCTGCAAGCAA-----GAGGCCGGCCCACGCGTTCCACGTTTCGTACGTGATA---CTACATTCCGGTCGTC
GCGCGCACAGCACGTCCGACGAAGCTGAGAT-CGATGAGGCCCGACGCCGGCGCCGCGGGGAGCATGGCGTCCATGGAGT
GGGAGCCGAAGGCGCTCTCCCTCCACGAGCTCAAGTACGCGAGGGTGAGGCACCGCCACCGAGGCTAGCTCAGCTCTC--
--------AATCTTTTAAGACAATTCTCTAAGATGTA---CTG-TATCCACTTCTGCAGGAGGCGGCGCTGTACGTCCTG
AGAACGCACTCCTCGGAGGACGCCGACCGGATCTTCACCGAGGTACGTGTATAGATGACCAGCT-TTGCATCCAGCACGT
AGTTCATCGTCGATCGGCCGGCTTCTGTCTCCCAGCTTTGTGATCGATCGACTAACCGAACCAGCTGGTATTTATGGAAC
TTGCTGCGTGCTGCAGGGCCTCAAGCCGGTGCTGGGCGTCAGGAGGGACTCCATGGCGGACTCCGACGAGGAGGATGACC
AGGGTGACGAGGACTACGACATGTTCAATCCCTACGCGTTTCTTGACGATGACGGTGTCTGCTGCCACCA---GTACGGA
CGCA---CCGCCGAGGAACGGGATGTTGCTACCGCACCTTTCTAATTAGCTTTACACAACACCTATTGACTAGCTTAGAT
CACCTGTAAATATATATAAT-TTTTTTGATAGTATGGATACAATTTTTTGATACACGTGGTAGTTACTTTCTCCCCATTC
GAG------------------------AAGGCATGTAATGTACAACTATGAACATTTTAGAGATCGAGACGGCGCGAA--
------TAGAGATTTTTATGAAGACAGTGTTATTTATTGATGATGTAAACTACTCAG-----------------------
------------------------------------------------ATTTGTACATGGGAAATGTATGCTTTTATCCC
TCGAGTTCGTCAAAAGTATAAAAACTAGGTCTCAAGATTTTTGGTAGACATTTGATTTTTTTTAAGTCCCAAAATCGGAT
AAGTTGGGTCCAAAACAAGATATTAATCACTTTGACGGGGTTTGACCAGACCATGTTTATCGATGAACAGTAATACAAGA
AATATAGCAAACAAAATTCAAAAAAAATGAAACTTCGCGACAACCAAGATGCTTGGATGTGCTAGGTGCACTTAAATTTT
TGTGAGCCAGTTTTTTTTTTGCCACGAACTCCTTCAATATCGGAACACAACACAACTTTTCACGCACCTAAAGCATATTG
GTTGCCACAAAATTTTAGATTTTTCAGAATTTGTTTGCTATTTTTTGCATTTAGTATTCATCGGTCAAACCTGATCAACA
TGGTCAAACCCACTAGTTTTGCAAATTTATCCGGTATAAGACTTGAAGGGCCAAATGTCTACTAAAAAAATTAAAGGACC
AAATCTATACTTTTAGGTACTTGATGGACTAAAAATACATTTTTCTCTTTATACATTGCCTAAAGGCATGAGCAACAAGC
TTCCTTTCTTTTTTCCAAAGATGACTCATTTATTAAAAAACAACCATTTATTCACAAACAATCAGAGTTTACAGGACTCT
TGGATACAACCAGGGAGACGACAGCGATAGATGGAATGAGCAGCAAGTTCACTCGATCTAGCCAACATATGAACGACCTC
ATTAACACGACGTCTCACTTGAACAAAAG
>chr4D_15
--------------AAAACTTCGTCGCTGTCAAATAAAAAGGAGAAAAAGAAGACGATCTCGTCTACTTCCTGACCTTTC
AATAATCATGCGGTATCTGTCTATATCGCTCGACGCTCGGTACGTATATATGTAGCGAAAA-------------CAGCAG
CTGAAGCAGACCGCCCAAATGCCCCATTTTGCACCA--------------------AAAAGGCTCTGCAGAAAGTGCAGA
GTGGTATCGCGAAGCAACAGGAGCATCCCAGCCGCGGGCGTCGGCAGCGGCAGGATCACACGC------AACACGAGGTG
GTAACCACGTCGCCTCCTGAACCCGAGCGGACGCCACGTGCCGGGTAGCCATTGGCTCAGACCGGCCGCGCGCCATGCAC
CGACCGACCGACGCCATAAGAGCAAGTACAATAGAACTGAGTCAGCAGGCTATAAGAAATAAACTAGTATATTTTTATTT
AATTGAAGTAAAAAGAAAAGGAGAGGGAAGGTAAGCAGACTCTTCGTGAAGAGCCAGCTCTAGCACGTGCTCCTAGACAT
TTTGTGAGAATGAAATATGGGCCACATAACAAAAAAGTAGTATACTTTTTTAATTTAATATTATATATATTGACTATAAA
ATGGGCTATAAATGACATGGCACTGTTTTATAGCGAGCAGCCCGCTACACTATTAACCATGCTATGAGGGTCGGCGACTA
CGACACGGTGATTGCTCTCCATCCCCGTTTCTCCACGCGTGTCACGACACCCCCCACGACGCACGTGTGCGCCTCCGCGG
TCGACACGTATGGAGTTCGTGCGTACTTTCTCTTCGTCCGGCCGACGCCTCAATCATCATGCTATAAATAGCGAACAGCA
GG------------------------------------------------------------------------------
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--------------GGAACTCCGTTCTCTCCTTCACCACGCACCGAGACCTACCACG-AAGCCGTGGACATACACGCATT
TTTTCTCATCTGCAAGCGATCGAGGAGGCCGGCCTACGCATCACACGTTTCGTACTC-----------------------
----------CACGTCCGGCGAAGCTAAGAT-TGATGAGGCCCGACGCCGGCGCCGCGGGGAGCATGGCGTCCATGGAGT
GGGAGCCCAAGGCGCTGTCCCTCCACGAGCTCAAGTACGCGAGGGTGAGGCACCGCCACCGAGGCTAGCTCAGCTCTCCA
TCTTCCTCAATCTGTTAAGACCATTCTCTGAGATGTA---CTATTATCCACTTCTGCAGGAGGCGGCGCTGTACGTCCTG
AGAACGCACTCCTTCGAGGACGCCGTCCGGATCTTCACCGAGGTACGTGTATAGATGACCAGCAATT-------------
AGTTCATCGTCGATCGCCGGTTTCTG---TCTCAGTTTTGTGATCGA---------CGAACCAGCTGGTAATTATGGAGC
TT-CTGCGTGCTGCAGGGTCTCAAGCCGGTGCTGGGCGTCAGGAGGGATTCCATGGCCGACTCCGACGAGGACGACGACC
AGGGTGATGATGACTATGACATGTTCAATCCATACGCGTTTCTTGACGATGACGGTATCTGCTGCCACCACCAGTACGGA
CGCA---CCGCCGAGGAACGAGATGTTGCTACCGCACCCTTCTAATTAGCTTTACACACCACCTATTAACTAGCTTAGAT
CACTTGCAAATATATATATGATTTTTTTGTAATATGTATACGATTTTTTGATAGAAGTGGTAGTTACTTTCTCCCGATTC
GAGTAGGCATTCTT-TACAGGTTCGGAAAGGCATGTAATGTAGAACTATGAAGATTTTAGAGATCGAGATAGCGCGA-TT
TCTGAGTAGAGATTTTTATGGAAACAGTGTTATTTATTGATGATGTAAACTACTC-------------------------
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>chr4A_87
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-------ATGCGGTATATGTCTATATCACTCGACCCTCGGTACGTATATATGCAGCGAAAATATCATGCGAAATCAGCGC
AGG------------------------------------AAAGGTGGCGTCCGGTGAAAAGGCTCTGCAGAAAGCGCAGA
GT---ATCGCGAAGCAACGGGCGCGTCCCAGCCGCGGGCGTCGGCAGCGGCAGGATCACACGTCACGCAAACACGAGGTG
GTAACCACATCGCCTCCTGCACCCGAGCGGAAGCCACGTGCCGGGCAGCTAGTGGCCGAGACCGGCCGCGCGCCATGCAC
CGACGCCGC-----------------------------------------------------------------------
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---------------------------------------------------------------ATGCGGGTCGACGACTA
CGACACGGTGATGGCTCTCCACCCCCGTTTCTCCC-GCGTGTCACATCACGACACCTCCACGACGTGTGCGCCTCAGCGG
CCGACACGTGTGGAGTTCGTGCTTACTTTCTCTTCGTCCGGCCGACGCCTCA----TCACGCTATAAATAGCCAACAGCA
GG------------------------------------------------------------------------------
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--------------GGAACTCCGTTCTCTCCTTCACCACGCACCGAGACCTACCACGGAAGCCGTACACATACACGCA-T
TTTTCTCATCTGCAAGCAA-----GAGGCCGGCCCACGCGTTACACGTTTCGTACGTGATAGTGCTACATTCCGGTCGTC
GCGCGCACAGCACGTCCGGCGAAGCTGATATCTGATGAGGCCCGACGCCGGCGTCGCGGGGAGCATGGCGTCCATGGAGT
GGGAGCCCAAGGCGCTGTCCCTCCACGAGCTCAAGTACGCGAGGGTGAGGCACCGGCACCGAGGCTATCTCAGCTCTCCA
TCTTGCTCAATCTGTTAAGACCATTCTCTAAGATGTATTTCTATTATCCACTTGTGCAGGAGGCGGCGCTGTACGTCCTG
AGAACGCACTCCTCGGAGGACGCCGTCCGAATCTTCACCGAGGTACGTATATAGACGGCCGGCT-TT-------------
TGTTCATCGTCGATCGGCCGGCTTCTATCTCAA--CTTTGTGATCGA---------CGAACCAGCTGGTATTTATGGAGC
TTGCTGCGTGCTGCAGGGCCTCAAGCCGGTGCTGGGCGTCAGGAGGGACTCCATGGCCGACTCCGACGAGGAGGACGACC
AGGGTGACGAGGACTACGACATGTTCAGTCCCTACGCGTTTCTTGACGATGACGGTGTCTACTGCCACCA---GTATGGG
CGCACCGCCGCCGAGGAACGAGATGTTGCTACCGCACCCTTCTAATTAGCTTTACACACCACCTATTAACTAGCTTAGAT
CACCTGTAA--ATATATATGATTTTTTTATAATATGTATACGATTTTTTGATAGAAGTGGTAGTTACTTTCTCCACATTC
GAGAAAGCATTTTTCTACAGATTCGGAAAGGCATGTGATGTAGAACTATGAAGATTTTAGAGATCGAGACAGCGCGAATT
TCTGAATACAGATTCTTATGAAAACGGTGTTATTTATTGATGATGTAAACTACTCCTATTTATAGATGGGGAATGAATAG
AGATTTTTATGAGAACAGTGTTATTTATTGATGATGTAAACTATTCCTATTTATAGATGGGAAATGAATAG---------
----------------------------------AGATTTTTATGAGAACAGTGTTATTTATTGATGATGTAAACTATTC
CTATTTATAGATGGGAAATG------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSS-------------SS--------------------------------------------------S
---------------------S-------------------------------------------SS-S-----------
-----------------------------S------SSS--------------------------S-------------S
-----S------------------------------S-------------------S-----------S-----------
----------------------------S----------------------S-------------------S--------
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---------------------------S-----------------------S--S-------------------------
-------------------------------------------------------------S------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------S-S-----S---------------S----S-S---S---S---------SS-S-S---S
S-----------------------------------------S-------------------------------------
------------------S-------------S-----------------------------------------------
-------S--------S---------------------------------------------------------------
-------------S-------S--------------------S-------------------------------------
-------------------------S-----------------------------------------SSSSSSSSSSSSS
--------------------------S----S---------------SSSSSSSSS----------------------S-
---------------------------------------------------------S-----------------S----
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--------------------S-----------------S-------------------S--------S------------
------------------SS-------S---S----S----S-----------S-S------------------------
------------------------------------------S---------S-----------------S---------
----------------------S--------------------------------SS-----------------------
----------------------------------------------------S--S----------S--SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SSS---SSSS--S-S---S--S-SSSSSS---SSSSSS
SSS--SSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_930
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------------------------------CTAGTGCTACCGGTGCTACG------------------------------
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>reverse_2357
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------------------------------------GGGGTTTGACCAGACCATGT------------------------
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