>input_sequence_76221
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-------------------------------------------------ATGGCGAACATGCTCATCCTTACAGGCATGG
CCACAATCCTCGCCGCCAGCACTGTCATCATAGTCACCTCCGTCAGCCTCAGCCCCGCGCACATTCACTTCTCCATCACC
GACGCCAACGGTGCAAACAGCACCGTGGACGGAATGGCCGGGGTGTCCTTCAACTTCAACCTCACCGTCGGCAACCCCAG
CCGCCGTGCAGGGGTGGAGTATAAGGACGTCATCGTGAACCTGCAGCTCGCCCGTAAGCGCGTGAAGAGGAAATCGGTGC
CGGCGACGGTGAATGAGTCCATGCCGCTGAGCCAGCGGCCCAACAGCCCCATATCCATGGCCGTCGCAGCGTTCGTGGAG
CAGGACTTATTAGATCTCTACTTGAAGAAGCTGCACTACAGAGACCATCCTACGTTGACAATCATTGTCACAGCACTGGT
CCATTTCAAGGTTGGGGTGGCCTACACCAGGCTCTACGACATTACAATCTCCTGCCCGCCCGTCGACTTCTCCGACGTCA
A------------------AAACATTTTTCCGGAGGGCAACGTCAATTGCTCTGCCTGA---------------------
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>chr5D_1_TraesCS5D01G567600
TTACAGTTCATAAATATTTGATGAAATTATACATAGCTTAGAGAAAACTAATGGATTTTGTTCTAGCCGGGTTTTT--TT
TCAAATTTATAAATTTTGGTCTAGGGTGCTACACCAGGCCTCCCACATCAGCACCTGCATCGTCCCACTAACAACACAAT
TCTTTTCCCCAATC--CTCCTGATTTCCACATATTTGTTTCTTTTTCCAACACGTGGTAAAGATATATTTGTTTTTTT--
--AACACATGGTAAAGAATTGA---TCGGGTCTTCATTGAGCAAAGTAAGAAAAATGTTATCTCCACTGTATGCCAATGC
TAATAGACATACTAATGATTAATGGCGCTAAAAAAGATGAGTAGGTCTCCCAGTGATTAAAGAGCTTTACTTTAGGCTAT
GTGATTAAAGAGGTGTTAAAGGGAAAGCATGTAAGAGCTGGTCTGGTTCTCTTTCGT-----------------------
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--GGGGTGATACTTTTTTTTTTGAAAGGTGGGGTG---ATACATGGAAGAAGGAGCACACACTTACATATCTGATGATCT
CTGGCCTGCGTGCCATGATGGATGCTTCCTGTGATGCTAATGCTAATAGACGTACTAACGATTAATCGCGCTAAAAAAGA
TGAGTAGGTCTTGCAGTGATTAAGGAGGTGTTAAAGGGAAAGCGCGTAAGAGCTGGCATGTGGTTCACTTTCCTGGGGTG
ATACATGGAAGAAGGATGACACTTACATATCTGATGCAGAACCCACAAGAAGGTGATGGTCTTTTCTGGTTGATGATCTC
TGGCCTGTGTGCCATGATGGATGCTCCCTGTAGTGG--------------------------------------------
--AACTGTAGTCCTAGGAATCTGCAGCAAAGGGAACAACGCAAACGA---------------------------------
-----------------------------------------AACGGACTTGACAAAATGAAATTTAAAATCGAGTGAGAA
ATAGTAGCTGGCCTGCGTGAGG-AA--TATTATATAACTCGATCTGCATGAGGCCTAAAGAAGCAGCTTCTGCAGCTGTT
AGCTATAGTGCCA-------ACTGCACCGCGCTCGGCAGCATGCTTTCCATGGCGAACATGCTCATCCTTACAGGCATGG
CCACAATCCTCGCCGCCAGCACTGTCATCATAGTCACCTCCGTCAGCCTCAGCCCCGCGCACATTCACTTCTCCATCACC
GACGCCAACGGTGCAAACAGCACCGTGGACGGAATGGCCGGGGTGTCCTTCAACTTCAACCTCACCGTCGGCAACCCCAG
CCGCCGTGCAGGGGTGGAGTATAAGGACGTCATCGTGAACCTGCAGCTCGCCCGTAAGCGCGTGAAGAGGAAATCGGTGC
CGGCGACGGTGAATGAGTCCATGCCGCTGAGCCAGCGGCCCAACAGCCCCATATCCATGGCCGTCGCAGCGTTCGTGGAG
CAGGACTTATTAGATCTCTACTTGAAGAAGCTGCACTACAGAGACCATCCTACGTTGACAATCATTGTCACAGCACTGGT
CCATTTCAAGGTTGGGGTGGCCTACACCAGGCTCTACGACATTACAATCTCCTGCCCGCCCGTCGACTTCTCCGACGTCA
A------------------AAACATTTTTCCGGAGGGCAACGTCAATTGCTCTGCCTGA----CATGCATCAGGACACAT
TTCAGGGTTAGATCTGCAGATCTGTTGTGCAAATGCAAGTTTACAATTAGCAGTTGGTATGATCTATGTGTTCGCTTGAG
CTTCAATCTGTGCTGAATGTAGTGTGCTGCTCTAGTAAAAAAAATCACTGTCGTAAGTGTCTCATTTCTCAATTCATCGA
CCCCTTCCTTCAATCTTTTCCGATTTTAGTAATAAAAGTGTATCACGGTCTGATTGGTCTCAAGAGTCAGGATTTGTTTT
TGGTTTCTTATGTGGGTCGAATTTCATTT-TTGTTTTGACTATAGAGTTGAACTTACCATGTGGCAACTTTCATATCAAC
ACAGAACTTCATTACCTACCTACAGTAGATGGTAACTTTTCAAGATGAATTTGCTCCGCCCCACAATAAAGAAAGTTGCC
ACTGTGTCTGTGTCAAAGTTGTCACGGTGTTTGTTCCAGTCAAAAAAAAGTTGTCATCATGTTTGTATCATAGTTGCCAG
GTGGCAAATTAAATACCAATACCATGACAATTCTATTAACTAGGTGGAAACTTTTAAGATGATTCTTCTCTGTCAATATC
GTGTTTGTATCACAGTTGCCAGGTGGCAAATTAAATACCAATACCATGACAATTCTATTAACTAGGTGGAAACTTTTAAG
ATGATTCTTCTCTGTCAAAATCTACACATACATGATCTAGTATCGAATCTCTCACCGAGGCACAAACCGATGGTGAAGAC
GGATCATTAATCGGATAGACTGTTTCAGAGTTAAAACATTTTAAATTTTTGAAAGAGCATTTATGATGCCGCTGTCATTG
CCGTTTTATCCTCCCACACATGCCATGCTGCATGTAAGACATCGAGCGGGGTTCACTAGCTAGGGAACACTCACTCCCTA
TTAACGTCCTACTCTTTCCCACTGTAAATGAAAAAGGGAAAACAACTACTACCTCCGTCTCGGTGTATAAGTCACTCGCA
TAGTTCTAGGTCATCGATTTGAGA
>chr4A_1
TTACAGTTCATAAAGATTTGATGAAATTATATATAGCTTAGAGAAAACTAATGGATTTTGTTCAAGCCGGGTTTTTTTTT
TCAAATTTATAAATTTTGGTCTAGGGTGCTACACCAGGTCTCCCACATCAGCACCTGCGTCGTCCCACTAACAACACAAT
TCTTTTCCCCGATCCACTCCTGATTTCCACATATTTGTTTCTTTTTCCAACACGTGGTAAAGATATATTTGTTTTTT---
--AACACATGGTAAAGAATTGATGATCGGGTCTTCATTGAGCAAAGAAAGAAAAATGTTATCTCCACTGTATGCCAATGC
TAATAGACATACTAACGATTAATCGCGCTAAAAAAGAAGAGTAGGTCTCCCAGTGATTAAAGAGCTTTTGGTTAGGCTAT
GTGATTAAAGAGGTGTTAAAGGGAAAGCGTGTAAGAGCTGGTCTGGTTCTCTTTCGT-----------------------
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--GGGGTGATACTT-TTTTTTTGAAAGGTGGGGTG---ATACATGGAAGAAGGAGCACACACTTACATATCTGATGATCT
CTGGCCTGCGTGCCATGA--------------------------------------------------------------
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-----------------TGGATGGTCCCTGTAGTGGAACATGAAGGCTTTGGTGTAATCTGCTTTTTTGCAAGTTTTTGT
GAAACTGTAGTCTTAGGAATCTGCAGCAAAGGGAAAGCGTCTTCTTCATATTGAAGTAATGATGAAGGGCAGGGGCCTGG
CTCATCATGGATTCGTGGCTGGGCCAGATCAATGCAAAGAAAATTGACTTAACAAAATGAAAATTAAAATCGAGTGAGAA
ATAG---CTAGCCTGCGCGAGCAATATTATTATATAACTCGATCTGCATCCGGCGTAAAGAAGCAGCTTCCCCAGCTGTT
AGCTATAGTGCCA-------ACTGCACCGCGCTCGGCAGCATGCTTTCCATGGCGAACATGCTCATCCTTACAGGCATGG
CCACAATCCTCGCCGCCAGCACTGTCATCATAGTCACCTCCGTCAGCCTCAGCCCCGCGCACATCCACTTCTCCATCACC
GACGCCAACGGTGCAAACAGCACCGTGGACGGAATGGCCGGGGTGTCCTTCAACTTCAACCTCACCGTCGGCAACCCCAG
CCATCGCGCAGGGGTGGAGTATAAGGACGTCATCGTGAACCTGCAGCTTGCCCGTAAGCGCGTGAAGAGGAAATCGGTGC
CGGCGACGGTGAATGAGTCCATGCCGCTGAACCAGCAGCCCAACAGCCCCATATCCATGGCCGTCGCAGCGTTCGTGGAG
CAGGACTTATTAGATCTCTACTTGAAGAAGCTGCACTACAGAGACCATCCTACGTTGACAATCATTGTCACAGCACTGGT
CCATTTCAAGGTTGGGGTGGCCTACACCAGGCTCTACGACATTACAATCTCCTGCCCGCCCATCGACTTCTCCGACGTCA
A------------------AAACATTTTCCCGAAGGGCAACGTCAATTGCTCTGCCTGA----CATGCATCAGGATCAAT
TTCAGGGTTACATCTGCAGATTTGTTGTGC-AATGCAAGTGTACAATTAGCAGTTGGTATGATCTATGTGTTCGCTTGAG
CTTCGATCTGTGCTAAATGTAGTGTGCTGTTCTAGTAAAAAAAATCACTGTCGTAAGTGTCTCATTTCTTGATTCATCGA
CCCCTTCCTTCAATCTTTTCTGATTTTAGTAATAAAAGTGTATCACGGTCTGATTAGTCTCAAGAGTCGGGATCTGTTTT
TGGTTTCTTATGCGGGTCGAAATTCATTT-TTGTTTTTACTATAGAATTGAACTTACCATGTGGCAACTTTGATATCAAC
ACACAACTTCATTACCTACC-----TAGATGGTAACTTTTCAAGATGAATTTGCTCTGCCCCACAATAAAGAAAGTTGCC
ATTGTGTCTCTCTCAAAGTTGTCACCGTGTTTGTTTCTGTCAAAAAAAGTAC-----CATGTTTGTATCATAGTTGCCAG
GTGGCAAATTAAATACAAATACCAAGACAATTTTATTAATT---------------------------------------
------------------------------------------------------------ACTAGGTGGAAACGTTTAAG
GTGATTCTTCTCTGTC----------------------------------------------------------------
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>chr5B_1
TTACAGTTCATAAAGATTTTATGAAATTATTCATAGCTTAGAGAAAACTAATGGATTTTGTTCTAACCTTTTTTTGT---
---------TAAATTTTGGTCCAGGGTGCTACACTAGGTCTCCCATATCAGCACCTGCGTCGTCCCACTAACAGCACAAT
TGTTTTCCT-GATCCACTCCTGATTTCCACATGTTTGTTTCTTTTTCCAACAGGTGGTAAAGATATATTTGTTTTTTTTT
TCAACACATGGTAAAGAATTGG---TCGGGTCTTCATTGAGCAAAGAAAGGAAAATGGTATCTCCACTGTATGCCAATGC
TAATAGACGTACTAACAATTAATCACGCT-AAAAAGATGAGTAGGTCTCCCAGTGATTAAAGAGGTTTTTTTTAGGCCAA
GTGACTAAAGGGGTGATAAAGGGAAAGCGTCTAAGAGCTGGTCTGGTTCTCTTTAATTTCCTGGGGTGATGCGAAAACTC
AAAACGGTGCCCGGGCTCATCTGCTCCCTCTCAGCAAAAAATTCAAAAACAATACTAGAAAAATTCAAAAAATTCCAATT
TTTTTGTGGTGGTAGATAATTTGACGCGTGAGGTGCGCCCCAAAATTCATCTCATTTGGACATCTGAGCAGCTCTCGGCA
AAAAAGACAAATCGGGTCAAAACAGTGCGTGAACAGTGAATATTTTTACAGACCCTGATTTTGTCTTTTTTGCCGAGAGC
TGCTCAGATGCTCAAATGAGATGAATTTTGGGGCGCACCTTACGCGTCAAATTATCTACCACCACAAAAAAATTTAGATT
TTTTTGATTTTTTCTAGTATTTTTTTTGAATTTTTTTCTAAGCGTGGGTGCAGATGAGCCCGGGTGCCGATTAGCCGCAC
TCGGGGTGATGCTT-TTTTCTTCAAGGTGGGGTGATATATACATGGAAGAAGGAGC------------------------
-----CTGCGTGCCACGA--------------------------------------------------------------
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-----------------TGGATGCTCCCTCTAGTGGAACAGGAAGGCTTTGATGTGATCTGCTTTTTTGCAAGTTTTTGT
GAAACTGTAGTCTTAGGAATCTGCAGCAAAGGGAAAGGGTCTTCTTCGTGTTGAACAATGCAAA----------------
----------------------------------CAAAAATAATGGACTTGACAAAATGATCTCAAATTA--------AA
ATAGTAGCTGGCCTGCGCGAGCAAA--TATTATATAACTGGATCTGCATCCGGCCTAAAGAAGTAGCTTCTGCAGCTGTT
AGCTATAGTGCCAACTGCCAACTGCACCGCGCTCGGCAGCATGCTTTCCATGGCGAACATGCTCATCCTTACAGGCATGG
CCACAATCCTCGCCGCCAGCACTGTCATCATAGTCACCTCTGTCAGCCTCAGCCCCGCGCGCATCCACTTCTCCATCACC
GACGCCAACGGTGCGAACAGCACCGTGGACGGAATGGCCGGGGTGTCCTTCAACTTCAACCTCACCGTCGGCAACCCCAG
CCATCGCGCAGGGGTGGAGTATAAGGACGTCATCGTGAACCTGCAGCTCGCCCGTAAGCGCGTGAAGAGGAAATCAGTGC
CGGCGACGGTGAATGAATCCATGCCGCTGAGCCAGCGGCCCAACCGCCCCATATCCATGGCCGTCGCAGCGTTCGTGGAG
CAGGACTTGTTAGATCTCTACTTGAAGAAGGTGCACTACAGAGACCATCCTACGTTGACAATCATTGTCACAGCACTGGT
CCATTTCAAGGTTGGGGTGACCTACACCAGACTCTACGACATTACTATCTCCTGCCCGCCCGTCGACTTCTTCGACGTCT
TCCAGGACGGCAGCGTGATAAACATTTTCCCGAAGGGCAACATCAATTGCTCTGCCTGACATGCATGCATCAGGATAAAT
TTCAGGGTTAGGTCTGCAGATTTGTTGTGCAAATGCAAGTTTACAATTAGCAGTTGGTATGATCTATGTGTTCACTTGAG
CTTTGATCTGCGCTAAATGTAGTGTGTTGTTCTAGTAATTTTT-TCACTGTTGTACGTGTCTCATTTCTCAATTCATCGA
TCCCTTCCTTCGATCTTTTCTGATTTTAGTAATAAAACTGTATCACGGTCCAATTAGTCTCAAGAGTCAGGATCTGTTTT
TTGTTTCTTGTGCTGCTCCAAATTCATTTTTTGTTTTGAGTATAGAATTCAAATTGCCATCTGGTAACATTGATACCAAC
ACAAAACTTCATTACCTACT---AGTAGATGGTAACTTTTCAAGATGAATTTGCTCCGCCCCATAATATAGAAAGTTGCC
ATTCTGTCCGTGTCAAAGTTGT---------------------------TAC-----CATGTTTGTGTCAGT--------
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>SNPs
--------------S-----------------------------------------------------------------
--------------------------------------S-------------------S---------------------
----------S---------------------------------------------------------------------
----------------------------------------------S---------------------------------
---------------S-------S--------------------------------------------SS----------
----------------------------S---------------------------------------------------
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--------------S-----------------------------------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
------------S----------------------SSSSS-SSSSSS---------------------------------
-------------------------------------------S------------------------------------
-----------------S---S---------------------------SS-----------------------------
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----------------------------------------------------------------S---------------
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--SS--S-------------------------------------------------------------------------
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----------------------------S---S------------------------------------------S-S--
---------------------S----------------------------------------------------------
----S---------S--------------S--------------------------------------------------
--------------------S----------------------------------S-----------------S------
------------S--------S------------------------S------------------------S--------
---S----------------SSS---------------------------------------------------------
-S-----------------------S---------S-S----------SSSSSSSSS-----------------------
----------------S-------S-------S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S------
S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_1323
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-----------------------CAGCAAAGGGAACAACGCAA-------------------------------------
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>reverse_2968
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-------ATCCTCCCACACATGCCATG-----------------------------------------------------
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