>input_sequence_76203
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-------------------------------------------------------ATGTCGACGGCGGGAGGCCCGGCGG
---------GGACGACGGTGTCGCAGCACGGGGGCGGCGGCGGGGGGTGCTGCAGCTCCAGCGGGACGCTGGAG------
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----------------------------------------------------------------CTCGTGGCGGCGTTCA
CGGCGGTGTGCCTCGCACTCTACGGGGTGATACTGTACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTG
CATCGGACGGGATCCAGCACGGCAGCCGGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCT
GGCAGCCATGCCGGTGGTCAGATTCAAGGCGGAGGCGCGT------GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGG
TGTGCCTGAGCGCCATGCAGGACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGGCACGCGTTCCATGTCGGCTGCGTC
GACGTCTGGCTGTGCGCGCGCGCCACCTGTCCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAAGGACGG
CTCCAGGAGGGCGGAGACGGCCGGACGGGAGCCGGTCCTGGAGAGCCCGGTATAG-------------------------
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>chr4D_1_TraesCS4D01G095800
ATCTCTATGTCTCCCTCCTTGACTTGATCACGGATGGAGTTGAAGCGTCTCTTCATGTGTTTGGTTCTTTTGTGAAATCT
GGATTCCTTCGCCATGGCAATTGCTCAAGTATTGTCATAAAAGATTTTCATTGGACCTAATGCACTAGGTATTACACCTA
GATCGGATATGAACTCCTGCATTCAGACTTCTTCATTTGCTGCTTCCGAAGCAGCTATGTACTCCGCTTCACACGTAGAT
CCCGCCACGACGCTCTGCTTGGAACTGCACCAACTGACAGCTCCACCACTCAATAAAAATACGTATCCGGTTTGTCACTT
AGAGTCATACGGATCAGTGTCAAAGCTAGCATCGAAGTAACCATTTACGACGAGCTCTTTGTCGCCTTCATAAATGAGAA
ACATATCCTTAGTCCTTTTCAGATACTTCAGGATGTTGTTGACCGCTGTCATGAATAATAAACATTTATCATGATATAAG
CAAATACTATAAATTAACAACTTTATTATTGACTCTAGAGTATATTTCCTTCTGTCGTGTCCCACGTCGATTGTAGCACG
TCATCTCACCAGTTGTAACATTCTCCATTGACGGATGTAGCATTTTAGTCAGGACGATTATAGTATATGTTCTCGTTGCT
TGCAATACCATCACAATATTTTTCGTCGCCGTTTGCAGCGTACAGCCGTGCCGATCCTAGCACCACAACTACACTGATCG
TCACTGGACTGATACAGAAAAGCAAAGTCTTATCACTTAATAAATTATCACTAAAATCTCTT---ATAAGGTGGAACACA
GAGCAGCCCCGCATGACCGCCAGGTCATCCCCAGCCACTAAAATCCATGCCCTCCACCAGGCGCCAGCACCACCGGCCGT
TACACTACAAACCAAGAAAACCATCATTGTTCGCACCAACCCACCCAACACACAGAGCAAAGCAAGAAACC-----GCAC
GGCACGCCACTGCCAGTTCCCTGCTTGAAGTGGT----GTCCATAGAT---CGGCATGTCGACGGCGGGAGGCCCGGCGG
---------GGACGACGGTGTCGCAGCACGGGGGCGGCGGCGGGGGGTGCTGCAGCTCCAGCGGGACGCTGGAG------
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----------------------------------------------------------------CTCGTGGCGGCGTTCA
CGGCGGTGTGCCTCGCACTCTACGGGGTGATACTGTACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTG
CATCGGACGGGATCCAGCACGGCAGCCGGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCT
GGCAGCCATGCCGGTGGTCAGATTCAAGGCGGAGGCGCGT------GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGG
TGTGCCTGAGCGCCATGCAGGACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGGCACGCGTTCCATGTCGGCTGCGTC
GACGTCTGGCTGTGCGCGCGCGCCACCTGTCCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAAGGACGG
CTCCAGGAGGGCGGAGACGGCCGGACGGGAGCCGGTCCTGGAGAGCCCGGTATAGCATGCGTGCG----CCACCGCGGAG
CTGCCGGTATGGCTTGAGGTAGTTAGCTGCTGCATAGGTGTTTGCTTCATCGGCTTGTCTTCTTGGAAGCGTGTGGATGG
ATGGCTACAGCTGCTTGATGGTTATCCACTGAGTACATAATTTTTGTGTTAGCTTGCTTCAATTGGGAGTGATGATCTGT
GTGCCATGGCTTCTA--AATTGTAAGCCTACTTGACTCTTGCATTGTTGATAGGTGAAGTTCCCCAAATCACTTCGTAAG
TAAGTTCATATTTTCCCCACAGA--AAAAATTAAGTTCATATTTGATGTACCCGTATGATATTG--CCCCTTTTTCCTAG
TTGCAGGAATAGCGATGTGGAATGGTTGTGACATAGCCGGGGGCATCTCTTGGTGCTAATTTATAGGATTGCGAGACAAA
TGGTCTTTAGTTAAACGCATGGTGTAGGCAATTGGAGCACTGTTAGTTAAATAACAAACCACCTGG---TTGTATTGCAA
TTGTGGCCAGTTAGGTGTGAAAGTTGTGGATGGATGACCTGTATGCACGGCTGAAAGGGACAC-ACAATTCCTTGAGTGC
TGAATACTACATTTTTCAATCCCATGTGCGAGAGTGGCCAGATATGGATGAGACTACGGCTTATCAGTATCTTATAT---
AGAGGAACCCCACCAATAATCATTAATTGTTACTCCCTCCGTTCTAAAATAGATGACCCAACTTTATACTAACTTTAGTA
ATAGATGACCCAATTTTGTACTAACTTTATACTAAAGTTACTACAAAGTTGGGTCTGTTAGGTTGATCTCTCTCCCGTTC
GAACCCAACGGGTCGAACGGGCCCCTGACTCGCGCCCTGATCGGGGGCGCCCAACCAAACCATGGTTGGTGGGCCCCTGT
GACCCGCGCTATATAAACAGAGGTGGGGGCCGGGACACGACTTACGAGGTTAATCGCTGCCACAATCCTCACCTACAATC
CCTACCGATCTAGGGTTAGCGCGGTGCTCACG
>chr4B_765
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--------------------------------------------TTATCACTAAAATATCTTACAGTAACTTGGAACACA
GAGCAGCCCCGCATGACCGCCAGGCCATCCCCCGCCACTAAAATCCATGCCCTCCACCAGGCGCCAGCACCACCGGCCGT
TATACTACAAACCAAGAAAACCATCATTGTTCGCACCAACCCACCCAACACACGTAGCAAAGCAAGAAACC-----GCAC
GGCACGACACTGCCAGTTCCCTGCTTGAAGTGGC----GTCCATAGAT---CGGCATGTCGACGGCGGGAGGCCCGTCAG
---------GGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGGCGGCGTTCA
CGGCGGTGTGCCTCGCACTCTACGGGGTGATACTATACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTG
CATCGGACGGGATCCAGCACGGCAGCCGGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCT
GGCAGCCATGCCGGTGGTCAGATTCAAGGCGGAGGCGCGT------GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGG
TGTGCCTGAGCGCCATGCAGGACGGCGACGCGGTACGCGCCCTGCCCGGGTGCAGGCACGCGTTCCATGTCGGCTGCGTC
GATGTCTGGCTCTGCGCGCACGCCACCTGCCCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAACGACGG
CTCCAGGAGGGCGGAGACGGCCGGACGGGAGCCGGTCCTGGAGAGCCCGGTATAGCATGCGTGCG----CCACCGCGGAG
CTGCCGGTATGGCTTGAGGTAGTTAGCTGCTGCATAGGTGTTTGCTTCATCGCCTTGTCTGCTTGGAAGCGTGTGGATGG
ATGGCTACAGCTGCTTGATGGTTATCCACTGAGTACATAATTTTTGTGTTAGCTTGCTTCAATTGGAACTG-TGATCTAT
GTGCCATGGCTTCTA--A--------------------------------------------------------------
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>chr4A_777
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--------------------------------------------------------TCTCTT---GTAACGTGGAAGACA
GAGCAGCCCCGCATGACCGCCAGGCCATCCCCCGCCACTAAAATCCAAGCCCTCCACCAGGCGCCAGCACCACCGGCCGT
TACACTACAAACCAAGAAAACCATCATTGTTCGCACCAACCCACCCAACACACAGAGCAAAGCAAGAAACC-----GCAC
GGCACAACACTGCCAGTTCCCTGCTTGAAGTGGC----GTCCACAGAT---CGGCATGTCGATGGCGGGAGGCCCGTCGG
---------GGACGACGGCGTCGCAGCATGGGGGCGGCGGCGGGGGGTGCTGCAGCTCCAGCGGGACGCTGGAG------
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----------------------------------------------------------------CTCGTGGCGGCGTTCA
CGGCGGTGTGCCTCGCACTCTACGGGGTGATACTGTACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTG
CATCGGACGGGATCCAGCACGGCAGCCGGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCT
GGCAGCCATGCCGGTGGTCCGATTCAAGGCGGAGGCGCGT------GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGG
TGTGCCTGAGCGCCATGCAGGACGGCGACGCGGTGCGCGCCTTGCCCGGGTGCAGGCACGCGTTCCATGTCGGGTGCGTC
GACGTCTGGCTGTGCGCGCAGGCCACCTGCCCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAAGGACGG
CTCCAAGAGGGCGGAGACCGCCGGACGGGAGCCGGACCTGGAGAGCCCGGTATAGCATGCGTGCGTCGC----CCCCGAG
CTGCCGGTATGGCTTAAGGTAGTTAGCTGCTGCATAGGTG-TTGCTTCATCGGCTTGTCTTCTTGGAAGCGTGTGGATGG
ATGGCTACAGCTACTAGATGGTTATCCACTGAGTACATAAGTTTTGTGTTAGCTTGCTTCAATTGGGGCCGATGATCTGC
GTG-CATGGCTTCTATGAATTGTAATCCTACG-GACTCTTGCATTGCTGATAGGTGAAGTCCCCCAAATCATTTCGTAAG
TAAGTTCATATTTTCCCCGCAAAAGAAAAAGTAAGTTCATATTTGATGTACCCGTATGATATTGGTCCCCCTTTTCCTAG
TTGCAGGAATAGCGATGTGGAATGGTTGTGACATAGCCGGGGACATCTTTTGGTGCTAATTTACAGGATTGCGAGACAAA
TGGTCTTTAGTTAAACGCATGGTCTAGGCAATTGGAGCACTGTTAGTTAAATAACCAACCACCTAGTAATTGTATTGCAA
TTGTGGCCACTCAGGTGTGAAAATTGTGGATGGATGACCTGTATGCACGGCTGAAAGGGACACTACAATTCCTTCAGTGG
TGAATACTACATTTTTCAATCCCATGAGCGAGAGTGGCCAGATATGGATGAGACTAAGGCTTATCAGTATCTTATAGTAA
AGACGAACCCCACCAATAATCATTAACTGTTA------------------------------------------------
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>chr2B_861
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---------------------------------------------------------------CCAGCACCGCCGGCCGT
AACCTTACACGCCTACAAAACCATCATTGCTCGCACCAAGCCAGCGGG--GAGAGAGCAAAGCAAGAA-CC-----GCAC
GGCACGACACTCTGCCAG-------TGGAGTGAC----ATCCATCGAT---CGGCATGTCGACGGCG---------TCCG
AGCAGCAGCAGCAGCCGCCGCCGCCGCA------------CCGGGGGTCGTGGAGCATCGGCGGGACGGTGGAG------
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----------------------------------------------------------------CTCGTGGCGGCGTTCA
CGGCGGTGTGCCTCGCGCTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTACGGTGGAGCGGGCGGGACGGCGTG
CACCGGACGGGACCCGACCCCGAGGCCGGGCCGGCGACGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCT
GGCCGCCATGCCGGTGTTCAGGTTCAAGGCGGAGCCGCGCGGGGC------CGGCGGCGGC------GAGGAGTGCGCGG
TGTGCCTGGGCGCCATGCAGGACGGCGACGCGGTGCGCGCCCTGCCTGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTC
GACGTCTGGCTGGGCGCGCACGCCACCTGCCCCGTCTGCCGCGCGTGCCCTGCCCTCCCGGTTCCGGCAGCGAAGGACGG
CTCCAGGACGGCGGAGACCGCCGGACGGGAGCCGGACCCGGAGAGCCCGGTATAGCATGCGTGCG---------------
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>chr2A_861
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---------------------------------------------------------------CCAGCACCACTGGCCGT
AACATTACACGCCAACAAAACCATCATTGCTCGCACCAAGCCAGCAGAGAGAGAGAGCAAAGCAAGAA-CCGCACGGCAC
GGCACGACACTCTGCCAG-------TGGAGTGACTGACATCCATCGATCGGCGGCATGTCGACGGCG---------TCGG
---------AGCAGCCGCCGCCGCCGCA------------CCGGGGGCTGTGGAGCCTCGGCGGGACGGTGGAG------
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----------------------------------------------------------------CTCGTGGCGGCGTTCA
CAGCGGTGTGCCTCGCGCTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTG
CGCCGGACGGGGCCCGGCCCCGAGGCCGGGCCGGCGACGGGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCT
GGCGGCCATGCCGGTGTTCAGGTTCAAGGCGGAGCCGCGCGGGGGCGGCGGCGGCGGCGGC------GAGGAGTGCGCGG
TGTGCCTGGGCGCTATGCAGGACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTC
GACGTCTGGCTGGGCGCGCACGCCACCTGCCCCGTCTGCCGCGCTCGCCCTGC---------TCCGGCAGCGAAGGACGG
CTCCAAGACGGCAGAGACCGCCGGACGGGGGCCGGACCTGGAGAGCACGGTATAGCATGCTTG-----------------
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>chr2D_1077
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------------------------------------------------------------GCGGGACGGTGGAG------
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----------------------------------------------------------------CTCGTGGCGGCGTTCA
CGGCGGTGTGCCTCGCGCTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTG
CGCCGGACGGGGTCCGGCCCCGAGGCCGGGCCGGCGGCGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCT
GGCGGCCATGCCGGTGTTCAGGTTCAAGGCGGAGCCGCGCGGGGC------CGGCGGCGGC------GAGGAGTGCGCGG
TGTGCCTGGGCGCCATGCAGGACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGCTGCGTC
GACGTCTGGCTGGGCGCGCACGCCACCTGCCCCGTCTGCCGCGCGCGCCCTGCCCTCCCGGTTCCGGCAGCGAAGGACGG
C-----------GGAGACCGCCGGACGGGAGCTTGACCTGGAGAGCCCGGTATAGCATGCGTGCGTGCGCCATCCCCGAG
CTGTCAGTGTGGCTTGAGG-------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S---S----------
------------------------S-------S-----------------------------------------------
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------S--------------------------S------------------------------------------S---
------------------S---------S---------------------------------------------------
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-------------------S---------S--------------------------------------------------
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--------------------------------------------------------------------S-----------
-------------------------S-----SS-------------S-------------S----------S--------
------------------S--S--------S---------------------------------------S---------
------------------------------------------S-----S--------------S----------------
-----------------------S-------------------------------S--------S---------------
---------S-S----------S---------------------------------------------------S----S
--------------------------S-----------------------------S-------------------S---
---S----------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_677
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-----------------ATTTTTCGTCGCCGTTTGCA-------------------------------------------
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>reverse_2772
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---------------------------------------------------AATCGCTGCCACAATCCTCA---------
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