>input_sequence_76196
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-------------ATGCCATCATCCTTGCA-AGGCAT-------ATCCACCACTCTTGG---------CCACATAACCCG
GGCGGCGCA-----TCAACCGGCAGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGA
GCGGTGCCGATCCGGGCTGGCCAGCGGTGGCCGGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGAC
CGGAGCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCCGAGCAG
GAGTACGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCAAGACGACGACGACGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGCGCGCCGGCA
GCGGGAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGAGGTGA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>chr3D_1_TraesCS3D01G429300
CCGGCTCCTAGTTGGGAGGCGTAAGGAAAAAAAAAGTGTAGCTATAGCAAAGCCTAGTGATGCAGATATAGTTGTAAAAA
CCGGACCGGACCGGTGGTCCGACTGGAAAACCGGGAACACTGCCTTGCCCCTTTTTAAAAGTGTGTCGGTCTTTTAGTAA
GAAAAACATAAAAAAGTTGCATCAACAAGAAATTGAACAACTAACCTTGAGGCAAGGCATGTGATAACCAACTAGACTAA
TAACACTTTGTGATTTATTAATCGTTCGCATCCAATACTACGTGTATTCATTAGATGTGAGATCAAAATTTTGGAAAATA
ACCTTAAATATTCCAGCTTCTTGTTGCAAATGAACTGATAAACATAAACCGGCAGTCCGACCAGTAAAAACCTAAACCTA
CAGCCTCACCGGTTCGGTTTTTTAAACTATGGATGCAGATGCAGTGCTTCTTCCACGTCACATTCGGGAAGGGGTTGACC
ATGGCGTCCACCACTAAACAAAGGCAATTATTGCCCATTTGATA------T-----------ACACCATGA--GGATTAA
GTCCCCACACCACGTACCTTTCCC-GATTAGCTTTTTCCCTAGCTAGCTACTGCAATCACAAAATCCACTT---GCTTCT
---------TCGATGCACATGCATGGCCAGTACTACTCATATAGCTA-----GAGTGTATATTGCTAATACCCACTTACT
AGTT--------------------------------AA---------------------------------TAAGCCGGC
TTAGCAATAAGTCAGTAGTTAATTACT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTAAG-----------AGTGCAGGAGCACATCTCCTCCTT-GCCTTCCTCCTCGTCCTCGATCGTCCTGGTCTGT
CCTGCACCA----TATGACCCTGCGC--TGCAGCTCACGG-------CGAGTCACAAGTCAATGCATGCCCTCGCGTCGG
GTCAACTAATGGGGCTAGCCCACCATG----TCACACCGCACGCCGTGTCGCCCTCCGTCTTCAGCTAGCT-----GCTA
GCTGC---TACACCTACCTT-------TTGCTTAG--------CTTGTACCCATATATATACACACAACCCGGCCGGCCC
CCTC-TTTCATGCATGCCATCATCCTTGCA-AGGCAT-------ATCCACCACTCTTGG---------CCACATAACCCG
GGCGGCGCA-----TCAACCGGCAGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGA
GCGGTGCCGATCCGGGCTGGCCAGCGGTGGCCGGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGAC
CGGAGCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCCGAGCAG
GAGTACGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCAAGACGACGACGACGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGCGCGCCGGCA
GCGGGAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGGTAGCTAGCAGGAGCGTCTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGGG
CGCATACACAGATCGA---GCAGGTGCTTAATTTGCATATATTTAGACGCCTCAAC----------CACACACACACGCC
TAGCTGATTTAGATTGT--A-------------AAAGTGAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGT
GTGTTGGAAGTTCT-TTGTATTGCCGGTTTCACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTGGGATACACAAGAAAGAGATTAACTTTGGATGGTCATTTTGTTTGATCTACACAAGTGGACCATGTGTTT
CTTTATGAAGTATCGAACATTTTTTATGGCAATTTATATTGTCGCGGGTATTATAATTTTAGTTTACAAGCATGGCAAAC
CCTGGC
>chr3D_432
--------------------------------------------------------------------------------
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-------------------------------GATGCAGATGCAGTGCTTCTTCCACATCACATTCGAG-AGGCGTTGACC
ATGGCGTCGACCACTAAACTAAGACAATTATTGCCCATTTGATAATACTAT-----------ATC--CCACCCGGATTAA
GTCCCCACACCACGTACCTTTCCCTGATTAGCTTTTTCGCCAGCCG----CTGCAATCACAAAATCCACTT---GCTTCC
TTTTCTCCGTCGATGCACATGCAGGGCCAGTACTACTCATATAGTACTAGCTAAGTATCTCTTGCTAACCACT------T
AGTT--------------------------------AA---------------------------------TTAGCCGGC
CCAACAATATTGGTTTAGGGACTTAAAAAAGTCCCTATAAGTCCCATCTAAACAGGAGGGACTTATAGGGACTTAAAGTG
ATGATTTGGGACTTATCAAAAAAGACTCTCAGGGAGAAACTTATAGGGACTTATAGTGGTGATTTGGATCTTTTAGCATG
TCATTTAATAACCTCTAGCCCATGATAAGTCCCTGTAAACAAACAAGTAGGGACTCGAGACTTATAAGTTGGGACTTAAA
AAAGTCCTAAGACTTATGAAACAAACAAGGCCTTATCCTA----------------------------------------
--------------------------------------------------------------------------------
AATTACTTAG-----------AGTGCAGGAGTACATCTCCACCTTTGCCTTCCTCCTCGATC----------------GT
CCTGCACCAACCATATGACCCTGCGC--TGCTGCTCGCGA-------CGAGTCATAAGTCAATGCATGCCCTCGCTTCAG
GTCAACTAATGGGGCTAGCCCACCATG----TCACATCGCACGCCGTGTCGCCCTCCGTCTTCAGCAAGCC-----GCTA
GCTGC---TAAACCTACCTT-------TTGCTTAG--------CTTGTACCCATATATATACACACAACGCGGCCGGCCC
CCTC-TCTCATGCATGCCATCTTGCTTACAGATCCGGCCGGCTCATCCACTCTCGGTCATCA------------CCGTCT
CGACTCGGTCGACGTCCACCAGCCGC----ATGGCGGCGAGCAAGGGAGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGA
GCGGTGCAGGTCCGGGCTGAACAGCGGCGGCAAGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCC
CGGAGCGGGAGCGGTTCTTGGTGCGCGCCGACCGCGCCGACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCCGAGCAG
GAGTACGGCTACGCGGCGAAGGGGCCCCTCACGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCACGATGACGACGACGGCGAGGTCGCCTCGGCGCCGACGACGCCGATTTGCGGCCTACAGCGCGGCGGCA
GCGGGAACATCAAGGTCCGGCCTGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGTGGTGAGCTCTAGGC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CTGCAGAACCGAAATGAATCTGCGCG
CGCATACACATATCGA---GCAGGTGCTTAATTTGCATATACTT-GACGACTCAAG----------CATACACACACGCG
TAGCTGATTTAGATTGT--A-------------AAAGTGAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGT
GTGTTGGGTGTTCT-TGTAT------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3B_432
--------------------------------------------------------------------------------
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-------------------------------GATGCAGATGCAGTGCTTCTTCCACATCACATTCGGGC-GGCGTTGACC
ATGGCGTCGACCACTAAACTAAGACAATTATTGCCCATTTGATAATACTACTACATGTCTACATC--CCACCCGGATTAA
GTAGCCACACCACGTACCTTTCCC-GATTAGCTTTTCCCCAGCCGATTA-------------------------GCTTCC
TTTTCTCCGTCGATGCACATGCAGGGCCAGTACTACTCATATAGTACTAGCTGAGTATCTATTGCTAACCACT------T
AGTT--------------------------------AA---------------------------------TTAGCCGGC
CC-----TAAGTCAGTTGTTAATTACC-----------------------------------------------------
-------------------------------------------------CTAAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------TG----------------------------------------
--------------------------------------------------------------------------------
TATTACTTAG-----------AGTGTAGGAGTACATCTCCCCCTTTGCCTTCCTCCTCGATC----------------GT
CCTGCACCA----TATGACCCTGCGC--TGCTGCTCGCGA-------CGAGTCATAAGTCAATGCATGCCCTCGCTTCAG
GTCAACTTATGGGGCTAGCCCACCATG----TCACACCGCACGCCATGTCGCCCTCCGTCTTCAGCTAGCC-----GCTA
GCTGC---TGCACCTACCTT-------TTGCTTAGCTTGTAGCCTTGTACCCATATATATACACACAACGCGGCCGGCCC
CCTC-TCTCATGCATGCCATCTTGCTTACA-ATCCGGCCGGCGCATCCGC---------TCA------------CCGTCT
CGACTCGGTCGACGTCCACCAGCGGC----ATGGCGGCGAGCAAGGGAGCAAGGAAGAGCCTGGTGTCGAGGACCCTGGA
GCGGTGCAGGTCCGGGCTGAACAGCGGCGGCAAGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCC
CGGAGCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCAGAGCAG
GAGTACGGCTACGCGGCGCAGGGGCCGCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCAGGACGACGACGATGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGGGCGCCGGCA
GCGGGAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCTTCCTTCTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGAGATTTCAACAAGTGACCACCCGCTCTTCCGCCGCCTC
CTCGACGACGCCGAGCAGGAGTACGGCTACGCGGCGCAGGGGCCCCTCACGCTGCCCTGCTCCGTCGACGCCTTCCTCGA
CGTGCTCTGGCACATGGACCACGACGTCCACGATGACGACGACGGCGAGGTCGCCTCGGCGCCGACGACGCCGATTTGCG
GCCTACAGCGCGGCGGCAGCGGGAACATCAAGGTCCGGCCTGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCG
GCGTCCTTCTTCTTCTCGCAGACGGCGGCTGGCGGTAGGTGGTGAGCTCTAGGCCTGCAGAACCGAAATGAATCTGGGCG
CGCATACACAGATCGA---GCAGATGCTTAACTTGCATATACTTAGACGACTCAAG----------CATACACACACGCG
TAGCTGATTTAGATTGTAAA-------------AAAGTGAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGT
GTGTTGGGTGTTCT-TGTAT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3B_433
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------ATGCAGATGCAGAGCTTCTTCCACATCACATTCGG-AAGGCGTTGACC
ATGGCGTCCACCACTAAACTAAGACAATTATTGCCCATTTGATA------T-----------ATC--CCACCCGGATTAA
GTCCCCACACCACGTACCTTTCCCTGATTAGCTTTTTCCCCAGCCG----CTGCAATCGCAAAATCCACTT---GCTTCC
TTTTCTCCGTCGATGCGCCAGTAGTAC---TACTACTCATATAG---TAGCTGAGTATCTATTGCTAACCACT------T
AGTT--------------------------------AA---------------------------------TTAGCTGGC
CCAGCAATCAGTCAGTTGTTAATTACC-----------------------------------------------------
-------------------------------------------------CTAAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------TA----------------------------------------
--------------------------------------------------------------------------------
TATTACTTAG-----------AGTGCAGGAGCACATCTCTACCTT-GCCTTCCTCCTCGTCCTCGATCGTCCTGGTCTGT
CCTGCACCA----TATGACCCTGCGC--TGCTGCAGCTCACGGCGCGCGAGTCATAAGTCAATGCATGCCCTCGCGTCAG
GTCAACTAATGGGGCTAGCCCACCATG----TCACACCGCACGCCGTGTCGCCCTCCGTCTTCTGCTAGCT-----GCTA
GCTACCTATACACCTACCTTGGCAACCTTGCCTAG--------CTTGTACACATATATATACACATAACCCGGCCGGCCC
CCTC-TCTCATGCATGCCATCATCCTTACA-ATCCGGCCGGCGCATCCAC---------TCTTGGCCACCAGCCCCGTCT
CGAGTCGGTCGACGTCCACCGGCGGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGA
GCGGTGCCGATCCGGGCTGGCCAGCGGTGGCCGGTCGTCGGCGGCGGTGGCGCCCGGGTGCTTCTCGGTGTACGTTGGGC
CGGAGCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCAGAGCAG
GAGTACGGCTACGCGGCGCAGGGGCCGCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCAGGACGACGACGATGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGCGCGCCGGCA
GCGGGAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCTTCCTTCTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGCTAGCTAGCAGGAGCGGCTT------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCG
CGCATACACAGATCGAGCTGCAGGTGCTTAATTTGCATATACTTTGACGTCTCAAC----------CCCACACACACGCC
TAGCTGATTTAGATTGT--A-------------AAAGTGAAACGAAAGAAGATCTATTCTATGCATGCATGTAAGCGCGT
GTGTTGGATGTTCT-TTGTATTACCGATTTCA------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3A_433
--------------------------------------------------------------------------------
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--------------------------------ATGCAGATGCAGTGCTTGTTCCACATCACATTCGG-AAGGCGTTGACC
ATGGCGTCGACCACTAAACTAAGGCAATTATTGCCCATTTGATA------T-----------ATATTCCGCCCGGATTAA
GTCCCCACAGCACGTACCTTTCCC-GATTAGCTTTTTCCCTAGCCG----CTGCAATCACAAAATCCACTTGCGGCTTCA
GTTTCTCCGTTGATGCACATGCATGGCCATTGCTAATACCCTAATTATT-------------------------------
--------------------------------AGTTAA---------------------------------GTAGCCGGC
CCAGCAATAAGTCAGTAGTTAATTGCC-----------------------------------------------------
-------------------------------------------------CTAAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------TAAGT-------------------------------------
--------------------------------------------------------------------------------
ACGTACTTATTGCTTAGAGCTAGCGTAGGAGCACATCTCCACCTT-GCCTTCCTCCTCGTCCTCGATCGTCCTGGTCTGT
CCTGCACCA----TATGACCCTGCGCGCTGCAGCTCACGG-------CGAGTCATAAGTCAATGCATGCCCACGCGTCAG
GTCAACTAATGGGGCTAGCCCACCATGCATGTCACACCGCACGCCGTGTCGCCGTCCGTCTTGAGCTAGCTAGCTAGCTA
GCTACCTAGACCCATCT-------ACCTTGCGTAGCTTGC------GTACATATATATATACACACAACCCGGCCGGCCC
CCTC-TCTCATGCATGCCATCATCCTTACA-ATCCAGCCGGCGCATCCAC---------TCTTGGTCACCAGCCCCGTCT
CGAGTCCGTCGACGTCCACGGGCGGC----ATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACGCTGGA
GCGATGCCGGTCTGGGCTGAACAGCGGTGGCAGGTCGGCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCC
CGGAGCGGGAGCGGTTTGTCGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGGCGCCTCCTCGACGACGCCGAGCAG
GAGTACGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCGCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCAGGACGACGACGACAGCGAGGCAACCGTGGCCCCGTCGACGCCGATATGCGGGCTGCAGCGCGCCGGCA
GTGGGAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGAGGTGAGCTATAGGCGCGCAGCTAGCTAGCAGGAGCGGG-T------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCG
CGCATACACAGATCGA---GCAGGTGCTTAATTTGCATATACTTAGACGTCTCAAC----------CCCACACACACGCC
TAGCTGATTTAGATTGT--A-------------AAAGTGGAAGGAAAGAAGATCTATTCTATGCATGCATGTAAGCGCGT
GTGTTGGATGTTCT-TTGTATTACCGGTTTCATGGAA-------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3A_433
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------ATGCAAATGCAGAGCTTCTTCCACATCACACTCGG-AAGGCGTTGACC
ATGGCGTCGACCACTAAACTAAGGCAATTATTGCCCATTTGATA------T-----------ATC--CCACCCGGATGAA
GTCCCCACACCACGTACCTTTCCCTGATTAGCTTTTTCCCCAGCCG----CTGCAATCACAAAATCCACTT---GCTTCC
TTTTCTCCGTCGATGCACATGCATGGCCAGTACTACTCATATACTTCTAGCTGAGTATCTATTGCTAACCACT------T
AGTTTTTTTTTGAAACATATTGCTAACCACTGAGTTAA---------------------------------TTAGCCGGC
CCAGCAATAAGTCAGTAGTTAATTACC-----------------------------------------------------
-------------------------------------------------CTAAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------TATAT-------------------------------------
--------------------------------------------------------------------------------
TAGTACTTAG-----------AGTGCAGGAGTACATCTCCACCTTTGCCTTCCTCCTCGATC----------------GT
CCTGCACCA----TATGACCCTGCGC--TGCTGCTCGCGA-------CGAGTCATAAGTCAATGCATGCCCTCGCATCAG
GTCAACTAATGGGGCTAGCCCACCATG----TCACACCGCACGCCGTGTCGCCCTCCGTCTTCTGCTAGCT-----GCTA
GCTGC---TACACCTACCTT-------TTGCTTAG--------CTTGTACCCATATATATACACACAACCCGGCCGGCCC
CCTCCTCTCATGCATGCCATCATCCTTACA-ATCCG-CCGGCGCATCCACCACTCTTGG---------CCCGCTCCCTCT
TGAGTCGGTCGACGTTCACGGGCGGC----ATGGCGGCGAGCAAAGGCGCGAGGAAGAACCTGGTGTCGAGGACCCTGGA
GCGGTGCAGGTCCGGGCTCGCCAGCGGCGGCCGGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCC
CGGAGCGGGAGCGATTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGTCTCCTCGACGACGCCGAGCAG
GAGTATGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCGCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTCCACCACGACGACGACGACGAGGTCGCCTCGGCACCGTCGACGCCGATATGCGGCCTGCAGCGCGCCGGCA
GCGGGAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTC---CTTCTTCTCG
CAGACGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGCTAGCTAGCAGGAGCGGCTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCG
AGCATACACAGATCGAGC---AGGTGCTTAATTTGCACATACTTAGACGTCTCAAT----------CACACACAAAC---
--------------------------------------GAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGT
GTGTTTGGTGTTTTCTTGTATTACCAGTTTCA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3A_539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAA
GTCCCCACAGCACGTGCCTTTCCC-GATTAGCTTTTTCCATAGCCG----CTGCAATCACAAAATCCACTT---GCTTCT
---------TCGATGCACATGCATGGCCAGTAATAAGGCAGT-----------AGTATCTGTTGCTAAACACT------T
GGTT--------------------------------AAGGCAGTAGTATCTGTTGCTGAACACTTGGTTAATTAGCTGGC
CCAGCAATAAGGCAGGAGTTAGTTACC-----------------------------------------------------
-------------------------------------------------CTAATAGTACCCCTCCGTTTCTTTTTAGTTT
GCATATAAGATTTGGTTAAAGTCAAACTTTATTAAC--------------------------TTTAACTAAGGTCTTAGA
AAAAAACCAAGATTCACAATATGAAATCAATATTGTTAAATGCATCATGAAATTAATTTTCATACCATATAGTTTTAATA
TTATAGATATTAATATTTTTTTTCTATAAAGTTTGACTTTGATCAAATTTTATATGCAGACTAAAAAAAAACCGGGGGAG
TATTACTTAG-----------AGTGCACGAGTACATCTCCACCCTTGCCTTCCTCCTCGATC----------------GT
CCAGCACCA----TATGACCCTGCGC--TGGTGCTAGCTA-------CGTATCCACG-----------------------
--------------------------------------------------------------------------------
---------------ACCTTGGCAACCTTGCTTAG--------CTTGTACA--------------TAACCCGACCGGCCC
CCT-CTCTCATGCATGCCATCATCCTTACA-ATCCGGCCATCACATCCAC---------TCTTGGCCACCAGCCCCGTCT
CGAGTCGGTCGACGTCCACCGGCGGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGA
GCGGTGCAGGTCCGCGCTGAACAGCGGCGGCCGGTCGTCCGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGGC
CGGAGTGGGAGCGGTTCGAGGTGCGCGCCGACCGCGCCGACCACCCGCTCTTCCGGCGCCTCCTCGACGACGCCGAGCAG
GAGTACGGCTACGCGGCGCAGGGGCCCCTCGCCCTGCCCTGCGCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGA
CCACGACGTTCA-CATGACGACGACGGCGAGGTCGCCGCGGCGCCGTCATCGCCGATATGCGGCCTGCAGCGCGCCGGCA
GCGGGAACGGCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGTCTCCGTCCTTCTTCTTCTCG
CCGACGGCGGCTGGCGGCAGGAGGTGAGCTCTAGGCGCGCATGAC-----------CGGCTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCG
CGCATACACAGATAGAAC---AGGTGCTTAATTTGCATATACTTAGACGTAAGTCTCAACCACACACACACACAGACGCC
TAGCTGATTTAGATTGT--ACTGTATATTGTAAAAAGTGAAAGGAAAGAAGATCTATTCTGTGCATGCATGTAAGCGCGT
GTGTTGGATGTTCT-TTGTATTACCGGTTTCATGGAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S---------------S-------
-------------------S-------------------------------------------S-SSSS-S---------
--------------------------------------------S-SSSS------------------------------
--------------------------------------------S-----------S-S---------SSS-SSSSSSS-
------------------------------------------------------------------------S-------
SS------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--------------------------------S---------------------------------------
------------------------------------------------------S-----------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------S----SS--S----------------------------------SS-SS-S-S
S-S-S--SS-------S------S--------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-----------------------------------------S-------S------------------------------
--------------------------------------------------------------------------------
--------S-------------S---------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_126
--------------------------------------------------------------------------------
--------------------------AAAACCGGGAACACTGCCTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>reverse_2139
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TCTTGCATGCAGAACCGAGA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
