>input_sequence_76191
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-----------------------------------------------ATGAGGCGCCTCGTGTTCGCGGAGCTGGTGGTC
CTCCTCGCCGCGGCGCTGCTGCTCCCCGTCGTGATCTGTTGCCGGCGCTGGAGCGGCGGCGTCGCGCGGCCGCTGCCCGT
CTCGGAGCAGCCCGGCGCCGG------CGCCAGCAGGAAGGAGCGCCGCGTCGAGCGGCTCCGGCGGGCGCTCCACGCCC
TGCGCGTCTGGTGCCGCCGCTCCCGCGTCGAGCCGGCGGCCTC------CCCGTCCACGTCCCCGTCCCCGTCTCCGGAC
GACGGCGCGCAGGCGCAGGGGGAGGTTCAGCCGGAGCGGGTGGCT------GCCGCGGCGGCGGAGCAGGCGGGGCCCGA
GGAGGAGGGCGTGGCGGCGTGGAGGGAGCGCTGGTTCGGCAGCCCCGGGTCGCGCGCGCTCTACACCATCGAGGAGGCGT
CGGAGACGGAGGGCGACGTGGAGAGCCAGTGCGGAGGAGCAGCCGAGCACCAGGAGGAGCCCGAGACGCCGTTCTACACG
CCGCCGGCCTCGCCGCCGCACGAC---------GCGGGGCAGCCGGAGCGCGGCGAGAGCAGCTAG--------------
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>chr3B_1_TraesCS3B01G582900
GACGTGATGCCGTTTAGATGATCTCCAGAGGACTGATTTGTGGTATCGGCATGCTTGTGTATGTTGCGAAGATCTGGGTG
TCTTCCTCGACGGTGTTGTCTATTAACAGTCTTAGATTCAGGGCTAGAAAAGCATGAGACGCCCCTAGGCTGTATTATTT
CTACAGTGGGTTAGACCACGTAAAGTCTTTGGGTGATGAGGATTTTCGAGTTCTCAGGAAAATGTTCATATGTGTCGAGT
CGGCAGAGTATCTGGTGCTCCCGACGCTTAAATGGTACTATGATACGGGCATCTGGTCCGTCAGATTCTTAGATCGAACG
ACATCCGGGAGATGTTGGATATGCTGGACCTATGCGCAATTTTTGGACTTCTCGAAGGCTTTGTCGCAAGTGTTGCAAAG
TAACTGAGAGCCGTCCGACCTTAGAATCCGACGGCCCAGAAGCCCATATCATGGTAGATATGTGATAACCATGATGCA--
----------------------------------------------------------CACAACCTGGGTAGACCCTTAT
GCTTACTTTATTTTGTTTTATTTATGGGGTCTTCTATGTAAGATTGTTTGTATTGGTTGCATACGAGCGTATTTACGCTT
TTTTCGCTACTTCTTGATGTAGCCCCATACGCTCCAGCTCATACTCCATAAAAAAATATCGCAAAAGAAAGCAGTAGAAG
AAAATCCCCAAAATGCCCCTGGGGGTTCAGGGTGGCCACCTGAAAGCAGCACGGCGAAAGCAGCAGTGACTCCCCCTGAC
CAACCACCGCCGGTGAACATTCGACTTAAAGCCGAAGCCTTTAAAGCCCCCACCCCCGCCTCCACCA-----CCCAAAGC
CAAAGCTCTTCTTCCTCCCCAGTCCAGTAC-------------TCCAGTCAAAGCCAAGCGAGGCGCCACTCTCAAGGAC
AAAAGACAAAAACTCTCTTTCCCTTGCTC--------CATTGCCGTGTAGTACCAGTAGAACCCC-AGCAGTTCACTCCA
CTCCTAGTCCTAGTACCACCGGGAAGAAGCTGGCTGTGGGCTGATCCATGAGGCGCCTCGTGTTCGCGGAGCTGGTGGTC
CTCCTCGCCGCGGCGCTGCTGCTCCCCGTCGTGATCTGTTGCCGGCGCTGGAGCGGCGGCGTCGCGCGGCCGCTGCCCGT
CTCGGAGCAGCCCGGCGCCGG------CGCCAGCAGGAAGGAGCGCCGCGTCGAGCGGCTCCGGCGGGCGCTCCACGCCC
TGCGCGTCTGGTGCCGCCGCTCCCGCGTCGAGCCGGCGGCCTC------CCCGTCCACGTCCCCGTCCCCGTCTCCGGAC
GACGGCGCGCAGGCGCAGGGGGAGGTTCAGCCGGAGCGGGTGGCT------GCCGCGGCGGCGGAGCAGGCGGGGCCCGA
GGAGGAGGGCGTGGCGGCGTGGAGGGAGCGCTGGTTCGGCAGCCCCGGGTCGCGCGCGCTCTACACCATCGAGGAGGCGT
CGGAGACGGAGGGCGACGTGGAGAGCCAGTGCGGAGGAGCAGCCGAGCACCAGGAGGAGCCCGAGACGCCGTTCTACACG
CCGCCGGCCTCGCCGCCGCACGAC---------GCGGGGCAGCCGGAGCGCGGCGAGAGCAGCTAGTCAGCCGGCGGGCG
ATGCGCCGCTCGTTCTCTGTCTGTCATAGATTCGACAATTTTCTTTGGGTTCTTCCGCACAGCAGCTGT-----------
-------------AAGCAAAGCGTGCATGATAGGCTTGGCTAGTCGGTAA-------TTCTTTCTTTCCCCTCCTTGTTT
CCGGAGGAAGGAATGGATGGAT----ATGCATGCAGATTAATACATACAGACAGTTCATCTTTCCTT-------------
-----------TTC-TCTACGGAGCAGGCGTA-CATGCAGCGAGGCACCGGAGACGGAGCGGCGAGTAATTACGCGGCTC
CAATTCTTTGGCGGACTTTAATTTTACAGCTAGCGCGCGGCTTGCCGC----TGCCGAGTGGAGTTACTCCACTCCCGCT
GCTCTATCCGTGCATGCATGTCAACTTTGAGTG---------CCGACAGTTTTCTTTTTGTCTCTGTGCAGTGCGTCCTC
ATTTTCCTGTG-----------TCTGGCAAAACAGCAGAATACACTCCGACCGTAGCATGCA------------------
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---GCCAGGAATTGTTGTGAACTTGCATAGACGG--------------------------------AGTGGAACCCGTGC
GCCCACCTTGATTTCTCGAGGGATCTACTCGTATGTGCTATGAGCCAAGCTGTGCGCGCGTGGTGGAGGTGGAGCAAGCA
----TCTTCTCCACTCCGATATCTCTCCATGGACGGAAAGGGGGGTGACGCTGGTTCGCTGCCTGGCTGAAGCCGAACCA
TCCTTTCCCACAGAACGCGTTGTGATGGGTGGGTGGGTGCAAACTGCAGGGGTACGTACGTCTGTCTCCCGGTGCAAGCA
GTGGCGTCTCGTCGTGGAGAAAGCGGCAGCAGCTGGCAGCTGGCCGGACATATGCACCGCCGGTTCGCTAGCTATATCTT
TTAGAAGAGGTCCTGCGCTAAGGGACTTTGGTTCAAACACATGAACAAACATTTTAAATAGCGCGGCATAGCACGATGTA
GCGTTCAGAGGAGGCCCGCCGCTAAAATGCACAGCGCGCTATTTAAAGCTATGGATGGACACATGTTGTTAGCCATGATG
ATGCTAAC
>chr3D_1
GACCTGATGCCGTTTAGATGATCTCCAGAGGACTGATTTGTGGTATCGGCATGCTTGTGTATGTTGGGAAGATCCGGGTG
TCTTCCTCGATGGTGTTGTCTATCAACAGTCTTAGATTCAGGGCCAGAGAAGCATGAGATGCCCCTAGGCCGTATTATTT
CTAAAGTGGGTTAGACCACGTAAAGTCTTTGGGTGATGAGGATTTTCGAGTTCTCAGGAAAATGTTCATATGTGTCGAGT
CGGCAGAGTATCTGGTGCTCCCGACGCTTAAATGCTACCGTGATACGGGCATCTGGGCCGTCAGATTCTTAGATCGGACA
GCATCCGGGAGATGTTGGATCTGCTGGACCTATGCGCAATTTTTGGACTTCTCGGAGGCTTTGTTGCAAGTGTTGCGAAG
TAATTGAGAGTCGTCCGATCTGAGAATCCGACGGTCCAGAAGCCCGTATCATGGTAGCACCTAAGGTTTGGTAGCACTAG
ATATTTTCCCGTGTCGAGTCGTCCATCTCTATCTCTAGACACTATGATATGTGGTACTCACAACCTCTGTAGACCCTTAT
GCTTACTTTATTTTGTTT----TATGGGGTCTTCTATGTAAGATTGTTTGTATTGGATGCATATATACGAGTG-------
---------------------------------------CATACTCCATAAAAAGAATTTGCAAAAGAAATCAGTAGATG
GAAATCCCCAGAATGCCCCTGGG-GTTCAGGGTGGCCACCTGAAAGCAGCACGGCAAAAGCAGCCGTGACTCCACCTGAC
CAACCACCGCCGGTGAACATTCGACTTAAAGCCAAAGCCTTTAAAGCCCCCACCCCCGTCTCTCTCCACCACCCCAAAGC
CAAAGCTCTTCTCCCTCTCCCTCC---------------CCAGTCCAGTCAAGGCCAAGCGAGGCGCCACTCTCAAGGAC
AAAAGACAAAAACTCTCTTTCCCTTGCTCACATACTCCATTGCCGTCTAGTACCAGCAGAACCCC-AGCAGTTCACTCCA
CTCCTTGTCCTGGTACCACCAGGACGAAGCTGGCCGTGCGTTGATCCATGAGGCGCCTCGTGTTCGCGGAGCTGGTGGTC
CTCCTCGCCGCGGCGCTCCTGCTCCCCGTCGTCATCTGCTGCCGGCGCTGGAGCGGCGGCGTCGCGCGGCCGCTGCCCGT
CTCGGAGCAGCCGGGCGCCGG------CGCCAGCAGGAAGGAGCGCCGCGTGGAGCGGCTGCGGCGGGCGCTCCACGCCC
TGCGCGTCTGGTGCCGCCGCTCCCGCGTCGAGCCGGCGGCCTCTGCCTCCGCGTCCGCGTCTCCGTCTCCCTCCCCGGAC
GACGGCGCGCAGGCGCAGCGGGAGGTTCAGCTGGAGCGGTTGGCC------CCGGCGGCGGCGG---------GGCCCGA
GGAGGAGGGCGTGGCGGCGTGGCGTGAGCGCTGGTTTGGGCCGACGGGGTCGCGCGCGCTCTACACCATCGAGGAGGCGT
CGGAGACGGAGGGCGACGTGGAGAGCCAGCACGGCGCC------------------GAGCCCGAGACGCCGTTCTACACG
CCGCCGGCCTCGCCGGCGCACGAC---------GCGGAGCAGCCGGAGCGCGGCGAGAGCAGTTAGTTA----GCCGGCG
ACGCGCCGCTCGTTCCCTGTCTGTCATAGATTCGACAATTTTCTTTGGGTTCTTTCGCGCAGCAGTAG-------AAGCA
GCGGCTGTAAGCAAAGCAAAGCGTGCGTGATAGGTCTGGGTGGTCGGTAA-------TTC----TTTCCCCTCCTTGTTT
CCGGAGGGAGGAGTGGATGGAT----ATGCATGCAGATTAATACATACAGACAGTTCATCTTTCCTT-------------
-----------TTTTTCTACGGAGCAGGCGTAGCATGCAGCGAGGCACCGGCAACGGAACGGCGAGCAATTACGGGGCTC
CAATTCTTTGGCCGACTTTAATTTTACAGCTAGTAGCCAGCCGCT-------------GTGGAGTTACTCCACTCCCTCT
GCTCTATCCGTGC-TGCATGTCAACTTTGAGAGGCGTCACCGCCGACAGTCTTCTTTTGCTCTTTGTGCAATGCGTTTGG
CACTGACCTCCATTCCCAGTCTTCTGGCAAAACATGAGAATATATATATACTGG--------------------------
----------------------------------------AACTGCGTCAAGATTGAACTCTACTCTTTTTACATACTTA
CGGGCTAGGAATTGTTGTGAACTTGCATAGGCGTACTGATGATAGAATAGAGGCTGAAGAGAAACAAGTGGAACCCGTGC
GCCCACCTTGATTTTTCGAGGGATGGAC------GTGCTACCAGCCCAGCTGTGCGCGCGTGGTGGAGGTGGAGCTAGCA
AGCATCTTCTCCACTCCGGTATCTCTCCATGGATGGAAAGGGGG----------CTGGCTGCCTGGCTGAAGGCGAACCA
TCCTTTCCCACAGAACGCGTATGTG-------------------------------------------------------
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>chr3A_721
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------------------------------------------------------------CAGCAGTGACTCCACCTGAC
CAACCACCGCTGGTGAACATTCGACTTAAAGCCAAAGCCTTTAAAGCCCCCACC------------A-----CCCAAAGC
CAAACCTCTTCTCTCTCTTCCTCCCCAGTGCAGTCCAGTCCAGTCCAGTCAAAGCGAAGCGAGGCCG--CTCTCAAAGAC
AAAAGACAAAAACTCTCTTTCCCTGGTTCACATACTCCATTGCCGTCTAGTACCAGCAGAACCCCCAGCAGTTCACTCCA
CTCCTAGTCCTGCTACCACCAGCAAGAGGCTGGCTGTGGGCTGATCCATGAGGCGCCTCGTGTTCGCGGAGCTCGTGGTC
CTCCTCGCCGCGGCGCTCCTGCTCCCCGTCGTGATCTGCTGCCGGCGCTCGAGCGGCGGCGCCACGCGGCCGCTGCCCGT
CTCGGAGCAGCCCGGCGCCGGTGCCAACGCCAGCAGGAAGGAGCGCCGCGTCGAGCGGCTGCGGCGGGCGCTCCACGCCC
TGCGCGTCTGGTGCCGCCGCTCCCGCGTCGAGCCGGCGGCCTC------CGCGTCCGCG------------TCTCCGGAC
GACGGCGCGCAGGCGCAGGGGGAGGTTCAGCTGGAGCAGATCGCCGCCCCGGCGGCGGCGGCGGAGCAGGCGGGGCACGA
GGAGGAGGGTGTGGCGGCGTGGCGCGAGCGCTGGTTCGGCGGCCCCGGGTCGCGCGCGCTCTACACCATCGAGGAGGCGT
CGGAGACGGAGGGCGACGTGGAGAGCCAGTACGGCGCC------------------GAGCCCGAGACGCCGTTCTACACG
CCGCCGGCCTCGCCGCCGCACGATGGAGAGCAAGCAGACCAGCCGGAGCACGGCGAGGCCAGTTAGTTA----GCCGGCG
ATGCGCCGCTCGTTCCCTGTGTGTCATAGATTCGACAATTTTCTTTGGGTTCTTTCGCGCATCAGCAGCAGCAGAAAGCA
GCGGCTGTTG---AAGCAAGGCGTGCATGATAGGATTGGCTAGTCAGTACTAATTCTTTC----TTTCCCCTCCTTGTTT
CCGGAGGCAGGAGTGGATGGATGGACATGCATGCAGATTAATACTACTACGGCGAATCTGCATGTATTAATCTGCATGAA
TTGGAGCCCCCTTTTTTTACGGAGCAGG------------------------AACGGGACGGCGAGTAATTACGGGG--C
CAATTCTTTGGCGGACTTTAATTTCACAGCTAGCGCGTGGCTAGCCGCTGCATGCGGAGTGGAGTTACTCCACTCCCTCT
GCTCTATCCGTGCATGCATGTCAACTTTGAGTGGCGTCGCTGCCGACAGTCTTCTTTTTTCCTTTGTGCAATGCGTCCCA
TTCCTCGCAAAACACAGACTCGCCAAGTCTCAAAATAAGTGTCTCAATTTTATCGCACTATTAATACAAAGTTATATTAG
GTTAAAACACTTATTTTAGGACGAAGGAAGTACTAAAAAAAACGGTGTCAATATTGAACTGTACCCTTTCAAGCTAACGT
GGTATTACATACAG----------------------------------AGAGGCTGAAGAGAAACAAGTGGAACCCGTGC
GCCCACCTTGATTTTCCGAGGGATCC------ATGTGCCATCAGCCAAGCTGTGGGCGCGTGGTGGAG----------CA
AGCATCTTCTCCACTCGGATATCTCTCCATGGATGGAAAGGGGTGTGACGCTGGCTGGCTGCCTGGCTCAAGGCGAACCA
TCCTTTCCCACAGAACGCGTATGTG-------------------------------------------------------
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>SNPs
---S--------------------------------------------------------------S-------S-----
----------S------------S--------------------S---S----------S----------S---------
---S----------------------------------------------------------------------------
----------------------------------S---SS----------------S-------------------S--S
S-------------------S---------------------------------S---------S-----------S---
---S------S-------S--S------------S----------S-----------SSSSSSSSSSSSSS-SSSS-S--
------------------------------------------------------------------SS------------
------------------SSSS----------------------------------S------SSSS--SS-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-SS-S----------S-------S-
S---------S------------S-------------------------------S-----------------S------
---------------------------------S------------------------S---SSS---------------
------------S----S--SSS--SSSSS--------------------------------------------------
----------------------------------------------S---------S-----------------------
-----------S--------S-----------------------------------------------------------
-----------------S--------------------S-----------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------S-----S----S-----S--S---------
-------------------------------S-------S----S--------S--------------------------
----------------------S-S---------------S---------------------------------------
------------------------------S---S-SSSSSSSSSSSSSSSSSSSS------------------------
-------------------------------------S------------------------S----S-SSSS--S----
---------------S--------------------------------------S---S-------S-S-----------
----------------------------------S-------------------------SSSS----------------
-------S----S-------------------------------------------------------------------
-------------S-------------------------------------SS-----S---------------S-----
------------------------------------------S------------S---------------------S--
--------------------------------------------------S--------S---S------S-------SS
S-S----SSSS-----------------------SS---------SSSS--S-SSSSS-SSS------------------
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-----S------------------------S--S----------------------------------------------
--------------S----------S--SSSS---------S---------------------------------S----
---------------------------------S--------------------S-S---------------S-------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_675
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---------------GATGTAGCCCCATACGCTCC---------------------------------------------
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>reverse_1973
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----------------------------------------------------GACGGAGCGGCGAGTAATTA--------
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