>input_sequence_76190
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-----------------------------------------------ATGGCTTCTCGAGCCCTCGCCGCGCTGTCCATC
CAGCCGCGCCTCGGCGGGGGCGCGTCGGCGCTCGGACGGCCCGCCGTCCGCGTCCGCGCCAGGCCGCCGCGGCGGCGCCG
GCCCATGGTGGTGCGGGCGGGCGGGCCGCCGAGCACCAACGTGCTCATCCTCGCCTTCGTGCTCCCGCTCTCGCTCTTCG
TCGGCACCCTCGTCGCCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGGTTCCTCCGGGAGGTACGCGCCTCTCCGCCC
AAGCACGTACTCTGTATGAAGTATGAACAAGCATCTGCTGATTGGCATGTAG--------TATCATTGAGAGATAAATTA
TCGTATGTGCATGTGCAGATGGAGATCAACAAGGCGATACTGGAGGAGAACGAGGCTTCCTCCGAGGAGGCGGCAGACGG
CGGCGGAGAGTACGTCGTCAACGGAGACGAGGCCGCGTTGCCGGCGGCGGAGAAGGAGCAGGTCCTTGTCACAGCTACTG
GCACTGGCACGCGCGCCAGGAACAGGCCGAAAAGGGAAGTGTATTAG---------------------------------
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>chr3B_1_TraesCS3B01G525600
TTCCCAAATTGTTCGGCATTTTAAAAAAATCAAGAAATATTCGAAGTTTGCAAAAATATTTCCAATTTTACAAGTTGTCC
GAATATTATAAATTTTAAAAAAAATTGGAATTTTTATAATTTTCCAAAAAACATTCTGAATTTTTAGAAATTGTTTGATA
TTATCAAAAAATTACCGCAATTTTCAAGTTTATTCGTAAAATTGTAAAGGAACTCTATAAAAATTGTTTGAAATTTAAAA
AATGTTCTGATTTTCTAGCAAACGATCACATTTTCAAAACAATTGTAAAATATATTCTTATTTTAAGAAAATGCTCACAT
TTCAAAAACTGTTCACAAATTTGGAAAATAGTCTGAATTTGAAAGCAATGCTCGTGTTTTTAAAATCAATGCACGTTTTC
AAAAATCACAATAGCGAAAAATGCTTGAGTTTGTTGAAAAATGTTCAGATTTTAAAAAACATTCTTCACAATGTCAAGAA
AAATTCTCAGTTTCAAAAAAAAGTTAGTGTTTTGCAAAAATTAATCTTATTACACAAAAAAATGCGGATTTAGTAAGTTG
CCTACTATTTCTGTATAAATTTTTGCCTTTTGATATAAAAATCGAGTGAAAAAAAACTAGGAAAAAACGTAACGCTGCTC
GCTACAGTACTGCTGCTTGCTAGAGCGAATTGTTGTGAGAAACTCGAGCGTTTTGGCGCAGTGAGCGTCCAATAGGCGCT
TATTCTTTACTTTTTTTTTAGGGGCTGCGCTCCTTCTTTACTATCCCGTTCGTCTTGTGCAGGGTTGCCGTGGGCCTCCG
GCCCGTTGGCCGATGGGGTTG-------TCGTAGGGCCTAACGGTTAAGCATGCCAGTGCGGCTACGATCGGGCGGCTGG
GATTAATCGGGCCGACGTGGCGCAGAGGAAAGAATGGATAAGACAAACGCCATCGTCCTATGACGCTCTCTGCCCGCGCA
GGCACAGCTGAGCCTCGCCTCGCCTCTCCAGTCTCCACCGTCCGTCCATGGCTTCTCGAGCCCTCGCCGCGCTGTCCATC
CAGCCGCGCCTCGGCGGGGGCGCGTCGGCGCTCGGACGGCCCGCCGTCCGCGTCCGCGCCAGGCCGCCGCGGCGGCGCCG
GCCCATGGTGGTGCGGGCGGGCGGGCCGCCGAGCACCAACGTGCTCATCCTCGCCTTCGTGCTCCCGCTCTCGCTCTTCG
TCGGCACCCTCGTCGCCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGGTTCCTCCGGGAGGTACGCGCCTCTCCGCCC
AAGCACGTACTCTGTATGAAGTATGAACAAGCATCTGCTGATTGGCATGTAG--------TATCATTGAGAGATAAATTA
TCGTATGTGCATGTGCAGATGGAGATCAACAAGGCGATACTGGAGGAGAACGAGGCTTCCTCCGAGGAGGCGGCAGACGG
CGGCGGAGAGTACGTCGTCAACGGAGACGAGGCCGCGTTGCCGGCGGCGGAGAAGGAGCAGGTCCTTGTCACAGCTACTG
GCACTGGCACGCGCGCCAGGAACAGGCCGAAAAGGGAAGTGTATTAGCTACTAGCTAGATTTGCACGGAGGGAAATGCTT
TGCTACCTTTGAGATGTGTCCGTCAATCAGCTTGTAAATCTTTT-GCAAATGTTTCAGTGTGATTGATAGCATATGCAAG
TTAATGCGCGATC-----AAATATATATACCCCAGGCAACTGAAGAACGAAGCTGATAATATATATTTTGAGGTATATAT
ACCAAGGAGCTGAAGCGCTTCATAACTG-TTTTTTCAGAGGAGCAATGCTACACCTACGTAGCTGTTGTGCGTAAACTAA
CGTAACAGCTTAGGTGTCTTTTTTCCACGTAGTTTCTTTCGTACGAAAGAAACTACGTACGCTTACGTAACTTGACTAAA
ACTAATCCCTCCACCCCCCCTGATTTTAACTGGGTGGGTCCCTCCCCCTAATTCCCTCCAACAGAAAAAAGACACCTAAG
CTGTTACGTTAGTTTACGCACAACAGCTACGTAGGTGTAGCATTGCTCCCATACGTGCATGCTGTCTATCCGTAGTCTTT
TCTTAGAAGGATCATAC-----------------------------ATGAGAAAGTTGTGCAACGGTGAAATTTGTGGCT
TTTAAGACAGTACTCTAAAGAGGTACTGA-GATGCTAGGCAAAGCAAATCAAAGCTTTATGCCATCATACATTTCAGACA
ACA---------------A--------------------CCAGGAAGAAGCAAAATAAACAGACATTTATTCCAACCTTT
TTTG--TGTGGAATCATTTATTCAAGCTTGTTACAAGTATCCTTTTATGAACTCTATGTACCACATGCTTGTGCCAGTTT
GT------GTAACTCAAGCAAGAGATGTTTGTGCTGTGTGTAAACAGTGATACATACAGTGTTGTCCTTCTTTGTAACAT
CTGCTGTAGTTTT--AATTTTAAAAACGAC-GAAAACATCTTACACGAGACCTGTCCCCGTCTAGCGGAAATAGCCGTAG
AGCTCCAGGAAGCAGATGCAGAGGTTCCAGGTGTTACTGGTCGTCGGCCCCGTCAGAGCAAGCCGGAAGAACCGGAACGG
CAGCAGCGCC
>chr3D_747
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--------------------------GCGCTCCTTCTTTACTAACCCGTTCGCCTTGTGCACGGTTGCCGTGGGCTTCAG
GCCCATTGGCCGATGGGTTGTCGTAGCCTCGTAGGGCCTAACGGTTAAGCATGCAAGTACCGCTACGATCGGGCGGCTGG
GATTAATCGGGGCGACGTGGCGCAGAGGGGAGAATGGATAAGACAAACGCCATCGTCCTACCACACTCTCTGCCCGCGCA
GGCAGCCGAGCTGAGCTGA--GCCTCTCCAGTCTCCACCGTCCGTCCATGGCTTCTCGAGCCCTCGCCGCTCTGTCCATC
CAGCCGCGCCTCGGCGGGAGCGCCTCGGCCCTCGGACGGCCTGCCGTCCGTGTCAGCGCCAGGCCGCCGCGGCGGCGCCG
GTCCATGGTGGTGCGGGCCGGCGGGCCGCCGAGCACCAACGTGCTCATCCTCGCCTTCGTGCTCCCGCTCTCGCTCTTCG
TCGGCACCCTCGTCGCCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGCTTCCTCCGGGAGGTACGTATTCT-------
--------------------GTATGAACAAGCCTCTGCTGATTGGCATGTACTGTAGTACTATCATTCAGAGATAAAATA
-CGTGTGTGCATGTGCAGATGGAGATCAACAAGGCGATACTGGAGGAGAACGAGGCTTCCTCCGAGGAGGCGGCAGACGG
CGGCGCAGAGTACGTCGTCGACGGAGACGAGGCCCCGTTGCCGGCGGCGGAGAAGGAGCAGGTCCTTGTCACAGCCACTG
GCACTGGCACGCGCGCCAGGAACAGGCCGAAAAGGGAAGTGTATTAGCT--TAGCTAGATTTGCACGGAGGGAAATGCTT
TGCTACCTTTGAGATGTGTCCGTCAATCAGCCTGTAAATCTTTT-GCAAATGTTTCAGTATGATTGATAGCATATACAAG
TTAATGCGCTTTCAAAAAAAAAACATATACCCGAGGCGGCCGAAGAACGAATATATGTATG----TTTTGAGGTATATAT
ACCAAGGAGCTGAAGCGCTTCAGAACTGTTTTTTCAGAGATA--------------------------------------
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------------------------------------------------CCATACATCCATGCTGTCGATCATATCACATG
CAT---------------------------AGTGGTGTAGTGACTAATGAGAAAGTTGTGCAACGGTGAAATTTGTGTCT
TTTAAGAGAACATCGTAAAGAGATACTGATGAAGCGAGGT-------------------------------------ACT
ACATTTTCAGGTTTTACAATTCAACTTTCACCACGACAACTAGGGAGAAGCAAAATAAACAGACATTTATTCCAACTTTT
TTTTTTTGCAGAAGCATTTATTCCAGCTTATTACAAGTATCCTTTTATGAACTCTATGTACCACATGCTTGTACCAGTTT
GT------GTATGTCAAGCAAGAGGTGTTTGTGCTGTGTGTAAACAGTGATACATACAGTGTCGTCATTCTTTGTAACAT
CTGGTGCAGTTTTATAACTTTCAAAACGAC-GAAAACATCTTACACAAGACCTGTCTCCGTCTAGCGGAAGTAGCCGTAG
AGCTCCAGGAAGCAGATGCAGAGGTTCCAGGTGTTACTGGTCGTCGGCCCCGTCAGAGCAAGCCGGAAGAACCGGAACGG
CAGCAGCGCC
>chr3A_855
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-------------------------------------------------------------GCTACGATCGGGCGGCTAG
GATTAATCGGGGCGACGTGGCGCAGAGGAGAGAATGGATAAGACAAACGCCATCGTCCTATCACACTCTCCGCCCGCGCA
GGCAGCCGAGCA-----GA--GCCTCTCCAGTCTCCACCGTCCGTCCATGGCTTCTCGAGCCCTCGCCGCTCTCTCCATC
CAGCCGCGCCTCGGCGGGGGCGCGTCGGCGCTCGGACGGCCCGCCGTCCGCGTCAGCGCCAGGCCGCCGCGGCGGCGCCG
GCCCATGGTGGTGCGGGCGGGCGGGCCGCCGAGCACCAACGTGCTCATCCTCGCCTTCGTGCTCCCGCTCTCGCTCTTCG
TCGGCACCCTCGTCGCCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGGTTCCTCCGGGAGGTACGTATTGT-------
--------------------GTATGAACAAGGCTCTGCTGATTGGCATGTACTGTG---CTATCATTCAGAGATAAAATA
-CGTGTGTGCATGTGCAGATGGAGATCAACAAGGCGATACTGGAGGAGAACGAGGCTTCCTCCGAGGAGGCGGCAGACGA
CGGCGGAGAGTACGTCGGCGGCGGAGACGAGGCCCCGTTGCCGGCGGCGGAGAAGGAGCAGGTCCTTGTCACAGCCACCG
GCACAGGCACGCGCGCCAGGAACAGGCCGAAAAGGGAGGTGTATTAGCT--TAGCTAGATTTGCACGGAGGGAAATGCTT
TGCTACCTTTGAGATGTGTCCGTCAATCAGCTTGTAAATCTTTTCGCAAATATTTCAGTTTGATTGATAGCATATGCAAG
TTAATGCGCGATCGAAGAATATATATATACCCGAGGCGACCAAAGAACGAAACCGATTATATATATATTGAGGCATATAT
AACAAGGAGCTGAAGCGCTTCAGAACTG-TTTTTCAGAGATA--------------------------------------
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------------------------------------------------TCATACATCCATACTGTCGATCCGCAGTCTTT
TCATAGAAGGATGATATTACTACATGCTAAAGTGGTGTACTGACTAATGAGAAAGTTGTGCAACGGTGAAATATGTGGCT
TTTAAGAGAACATTGTAAAGAGATGCTGATGAAGCTAGGCATAGCACATCAAAGCTGTATGC------ACATTTCAGACA
ACATTCTCAAGTTCTACAA--------------------CTAGGGAGAAGCAAAACAAACAGACGTTTATTCCAACTTTC
--TTTTTGCGGAAACATTTATTCCAGCTTATTACAAGTATCCTTTTATGAACTCTATGTACCACATGCTTGTACCAGTGT
GTGTGTGTGTAACTCAAGCAAGAGGTGTTTGTGCTGTGTGTAAACAGTGATACATACAGTGTTGTCCTTCTTTGTCACAT
CTGGTGCAGTTCT--AATCTTTAAAACAACAGAAAACATCTTACACGAGACCTGTCTCCGTCTAGCGGAAGTAGCCGTAG
AGCTCCAGGAAGCAGATGCAGAGGTTCCAGGTGTTACTGGTCGTCGGCCCCGTCAGAGCAAGCCGGAAGAACCGGAATGG
CAGCAGCGCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--------S--------S-------------S--S-
----S------------S-SS---------------------------------S---S-S-------------------
-----------S-----------------S-------------------------------S--S---------------
----SSSSS-SSSSS-SSSSS-------------------------------------------------S---------
------------------------------------------------------S-------------------------
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-------------------------------------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------S------------------S---------------S---------S--
S---S---------------------------------------------------------------------------
-------------------S--------------S----------------------------------------S----
-------------------------------------------------SS-----------------------------
-----------------------------------------------------------S--------------------
--------------------------------S----S--S----------S-----S----------------------
----------------------S-----------SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-S---------S-----S-------
------------S---S---------------------------------------------------------------
-------S-SS-S-S-------S---------S--------S----S---------S-----SSSSSS------------
----------------------------------------S---S-------------------------------S---
---S----S----S---------S-----S------------------------------------------S-------
------------------------S-------------------------------------------------------
---S--S--------------S----------------------------------S-------------S---------
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>forward_670
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----------TGCTGCTTGCTAGAGCGAAT--------------------------------------------------
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>reverse_1958
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-------------------------------------GTCCCTCCCCCTAATTCCCT-----------------------
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