>input_sequence_76180
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---------------------ATGGCCTCCCCATCCCCTCCGCCGCCGCCGGCCGCCGCCGACCAACGGCCCCACCACCC
CCTCTTCGCCGCGGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTCCCTCGGCCGCTCCTGCAGCTGCTCCTCTCCC
CCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGGCTCCCCGCCACCTGCCGCGACCCTTGCTCCT
CCTCCTCCTCCGCTGCAGGAGAGAGCCCCGGAGGTCGCCCCGCCTCCGCCTCCG---------------CCGCCGCCGCC
GGCGAAGCCCCAGAGCGTGTTCCTGGAGCCGGAGTTCGCGTCGTGGGCGCCCAAAGGCCGCGCTCTGGAGGTGATCCACG
AGGAGTTCGAGGCGGAGTGGGGGCCGGAAGAGATGGGCCTGCCCTGGACGTCGGACTCCGACTCGGACAGCTGCAGCGGC
AGTGACGACTACGACGACGGCGGCGGCGG---CGGGGAAGAGTACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCT
CATCGAGATCGACATCTCGAGGTGCCGGTGA-------------------------------------------------
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>chr2B_1_TraesCS2B01G232600
CCGTACCGTACAGGTACAGCGAGTCCCCAT----GGCCTGTAGACGTGCAGTTGGCCGCACCCGGAAGGATCTGCCCATA
TCTGGGCCACCCCTGCTCCTCCCCCGTTGGCAAGACTTCAAGTGGAAGACAAGTTGCCCCGCGGCGCAAACAAGAGAAAA
AAAA--GGCTCGCCCCGACACGTTAACATGCAGGGAAGATGCCTGCGAGGCTGCGACTGCCCGACGGGTGACGGATACGG
GATACGGGAGGATCTGGCG------GCTCCATCGAAAAGGGCACGAGGCATCCGGGCAAGGGCACGCAGGCCCGTCAGCT
TTCCTCCGTTGGTTTCGGCAGCGGCCGGTGGAGCTATCTCTCTCTGCCCGTCGGGG-ATTTGCTTCCCGTTTCGTCTCGT
CCCGTTGCCTTTT-CTTCCCGTTTCGTCTGGTCCGGTTGCCTTTTCCTCCCGTTTCGG-----GT---GCAGTGCAGGTG
GCAGCTCTGTGCCTTTACGTGCATGCTGCAGCCTTCCGCTCGCCCGAGCCGAGCCATTTGCATTTTCTGCCGGCCGGTGC
CCCGATTCGTGTGGCTCCGTGCTGCCGCCCATCATGTTTTTTACTGCTGACCCAGTCGCACGCCGTTTGACCGGACGCTC
CTTTTCCTGGCCGTGGT----------------AGATACCGGTCAATTTCCCCAGTACTGTCCCAACATGTGGACGTGGA
CCCACATGTCATCCCTACATTAGTCGCTGAAGAGGGTCTTGAGCATTTCAAGTTAGTAACACATTC-------TACCATT
AATTGGACTTGGAGGACAACGGACGAACAATCAG-TGAAGCGTACG-CGGTTTTTAACACAACATTCTACCGTCCTTCCG
G-----GCGTACCTGCAAAAAAAGATTGGG-GTTTTGATTTCGCTGGCTGGAACAAGAATAAAACCGGAAGCGCGTCCTT
CGCTCGTCTCGTTTGCTTGTCGCTTTAAAAAGAGAAAAACCGACTTGGCGGTGCGTGGCTT-----GGCTTTAACCACTC
---CACTCCTCCCGCCTTAAAATGGCCTCCCCATCCCCTCCGCCGCCGCCGGCCGCCGCCGACCAACGGCCCCACCACCC
CCTCTTCGCCGCGGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTCCCTCGGCCGCTCCTGCAGCTGCTCCTCTCCC
CCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGGCTCCCCGCCACCTGCCGCGACCCTTGCTCCT
CCTCCTCCTCCGCTGCAGGAGAGAGCCCCGGAGGTCGCCCCGCCTCCGCCTCCG---------------CCGCCGCCGCC
GGCGAAGCCCCAGAGCGTGTTCCTGGAGCCGGAGTTCGCGTCGTGGGCGCCCAAAGGCCGCGCTCTGGAGGTGATCCACG
AGGAGTTCGAGGCGGAGTGGGGGCCGGAAGAGATGGGCCTGCCCTGGACGTCGGACTCCGACTCGGACAGCTGCAGCGGC
AGTGACGACTACGACGACGGCGGCGGCGG---CGGGGAAGAGTACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCT
CATCGAGATCGACATCTCGAGGTGCCGGTGATGGATTTACCCCGACATTCCGACCGGTTTTCCCCCTTTGCTTCTCTTGC
GTTGGCTTTGACAAAAACAAAATACATTTTGCTGATCCGGCGTGTGAATTCGAGTGCCGTTCTTTATTCTCTTTATT---
ACTTAGATG-----CTGCAATGTACATAGGCTGGTGACTGGTGAGACGAGGAAGA---TACCGAGTGAGGAAGGCTTGCT
AATTTTTGGTTCATCTGAGATGATGGCGAGTTTAGTTTGATCCTACTACTAC----TAGTTTTTGTGCCATGTTAATTAC
TTGTCACCTCAAGGAA----TCAACTTGTGATGCTTGCATTGGTCTTTCTTTATCCAAGCATCTT-AGCTAGTGTTTACT
ATCATTAGTACTACAAGATCGTCCGCTTTTTGTTCTTGTTCCGAGAAGG-TTGCAATCATGCACCACATTGCGCGGCTGG
CGTTTTACTATATTCGAGTGCAGATCGTGCTTGAGTTCCATGT---TAC-GATAGCTTGGTGATACACTGA---------
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---------------------------TCTACTAGCT--GCTGCTTGGATCTGGAGAAA---ATTAGTAGCTTGGCGACA
CATGTGTAAAGATCGTGCCGGTTGTTGGTGGTTGGAATGGATCCGTTAAGTTGGTTCACGAAATTAGGTCGATCTCCGAG
CACGAGAACATACTCCTGCTGTCTGTGCCATGTAAGCATGTTCAATTAATACTGACAGGCTGCTTTGCTTCCCTTCAAAA
AAAAT--ATCAAGCCACTAATAATTAGGCTATATATGGAAATCCA------TATGTACAACAAGTTGTTTGAAGGGAACT
TATTCAATTCGAAACCAGTTGAGTTGGTACTTTTCTATGGATGATGGCACCAAATCGGAGCCGCATGTCCTGACGCGTAG
GCTGTCGTATCGTATCGCCTCAG---------------------------------------------------------
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--------------------------------------------------GGCTCAGGCAAACGTGACCGGCAGCAAAAG
ATCAAGCAAGCGCCGTCCCTGTCAGCCTCACGCCGCACAAGAGCGCACTGCTTCAGCGCAGTCGCGCCGATGGGGATTCC
GGCCAAACCCGG
>chr2D_5
ACCGTACC-----GTACAGCGAGTCCCCGTGGCCGGCCTGTAGACGTGTAGTTGGCCGCACCCGGAAGGATGTGCCCATA
TCTGGGCCACCCCTGCTCCTCCCCCGTTGGCAAGACTTCAAGTGGAAGCCAAGTTGCCCCGCTGCGCAAACAG----AAA
AAAA--GGCTCACCCCGACACGTTAACATGCAGGGAAGATGCTTGTGAC-CTGCGACTACCCGACGGGCGACGGGTGACG
GATACGGGAGGATCTGGCGCTGGCGGCTCCATCGAAAAGGGCACGAGGCATCCGGGCAAGGGCACGCAGGCCCGTCAGCT
TTCCTCCGTTGGTTTCGGCAGCGGCCGGTGGAG----CTCTCTCTGCCCGTCGGGGGATTTGCTTCCCGTTTCGTCTCGT
CCGGTTGCCTTTT-CTTCCCGTTTCGTCTGGTCCGGTTGCCTTTTCTTCCCGTTTCGTGTGCAGT---GCAGTGCAGGTG
GCAGCCCTGCGCCTTTGCGTGCATGCTGCAGCCTTCCGCTCGCCCGAGCCGAGTCATTTGCATTTTCTGCCGGCCGGTGC
CCCGATTCGTGTGGCTCCGTGCTGCCGCCCATCATGTTTTTTACTGCTGACCCAGTCGCACGCCGTTTGACCGGACGCTC
CTTTTCCTGCCCGTGGTCTTTGCACAATGCAGATACTACTGGTCAATTTCCCCAGCACTGTCCCAACATGTGGACGTAGA
CCCACATGTCATCCCTTCATTAGTTGCTGAAGAGGGTGTTGAGCATTTCAAGTTA--AACACATTC-------TACCATT
AATTGGACA-GGAGGACAATGGATGAACAATCAGGTGAAACGTACG-CGG-TTTTAACACAACATTCTACCGTCCTTCCG
G-----GCGTACCTGCAAAAAAAAGATCGGAGTTTTGATTTCGCTGTCTGGAACAAGAATAAAACCGGAAGCGC-----T
CGCTCGTCTCGTTTGCTTGTCGCTTTAAAAAGAGAGAAACCGACTTGGCGGTGAGTGGCTCTGCTCGGCTTTAACCACTA
---CACTCCTCCCGCCTTAAA-TGGGCTCCCCCTCCCCTCCGCCGCCGC---CCGCCGGCGACCAACGGCCCCACCACCC
CCTCCTCGCCGCAGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTCCCTCGGCCGCTCCTGCAGCTGCTCCTCACCC
CCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGGCTCCCCGCCACCTGCCGCGACCCTTCCTCCT
CTTCCTCCTCCGCCGCAGGAGAGAGCCCCGGAGGTCGCTCCGCCTCCGCCACCGCCTCCC---------CCGCCGCCGCC
GGCGAAGCCCCAGAGCGTGTTCCTGGAGCCCGAGTTCGCGTCGTGGGCGCCCAAAGGCCGCGTCCTGGAGGTGATCCACG
AGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTGCCCTGGACGTCGGACTCCGACTCGGACAGCTGCAGCGGC
AGCGACGACTACGACGGCGGCGGCGGCGGCGGCGGGGAGGAGTACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCT
CATCGAGATCGACATCTCGAGCTGCCGGTGATGGATTC-CCCCGACATTCCGACCGGTTTTCC--------TTCTCTTGC
GTTGGCTTTGACAAAAACAAAATACATTTTGCTGATTCGGCGTGTGAATTCGAGTGCCGTTCTTTATTCTCTTTATTACT
ACTTAGATG-----CTGCAATGTACATAGGCTGGTCACTGGTGAGCTGAGAAAGATACTACCGAGTGAGGAAGGCTCGCT
AATTTTTGGTTCATCTGAGATGATGGCGAGTTTAGTTTGATCCTACTACTACC-ACTAGTTTTTGTGCCATGTTAATCAC
TTGTCACCTCAAGGAAGGAATCAACTTGTGATGCTTGCATTGGTCTTTCTTTATCCAAGCATCTTGAGCTAGTGTTTACT
ATGATTAGCACTACAAGATCGTCCGCTTTTTGTTCTTGTTCTGACAAGATT-GCAATCATTCACCACATTGCGCGGCTGG
CGTTTTACTATATTCGAGCGCAGATTGTGCTTGAGTTTCATGTTAGTAC-GATAGCTTGGTGATACACTGA---------
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---------------------------TACTACTAGCTAGCTGCATGGATCTGGAGAAAATTATTAGTAGCTTGGCGACA
CATGTGTAAAGATCGTGCCGGTGGTTGGTGGTTGGGATGGATCCGTTAAGTTGGCTCACGAAATTAGGTCGATCTCCGAG
CACGAGAACATACTCCTGCTGTGCCATC----TAAGCATGTTCAATTAATACTGACAGGCTGCTTTGCTTCCCTTTCGAA
ATA--TAATCAAGCCACTAATAATTAGGCTATATATGGAAATCCA------TATGTACAACAAGTTGCTTGAAGGGAACT
TATTCAATTCGAAACCAGTTGAGTTGGTACATTTCTATGGCTGATAGTACCAAATCAGAGCCGCATGTCCTGACGCGTAG
GCTGTCGTATCGCATAACCTCAGGGCGAATGAAGTCTGTTTTAAACCTTAAACTCATAGAGCTTGTCGAAATTAAACCCT
CACTTTTGAATCCCTGAAATTGGTACCCTAACCTCTTTGATCCTGGTCATTATCAACCCTGAACCTGTTTGCCGCACTAG
GAAATGATCCATCCCACCCAGGATCAGAGTTTACTCTCACTGACGCCCATGCCCCATGTGTCATATACGTCTTCTATCCT
CAACTTCCTCTGTTCTCTCCTGAAAATCAGCGCGGCCCAGCCTCTGCCTCATCCACTTCCTCTTCAACTGCGCCGCTGAC
GGCCGACAATGGCGCCTCGACGCCACCAACACTGCGCTCGTGCACATCGCTTTGTTCGCCCGCCCTTGCCGAGCTGCAAG
CTTTATCCACCCTCAGTCTCATCAGCGACGGTCTGCGGAGCACGCGCGCGGAGAGGCGGTACCGGCACGAGCGGGTAGAC
AGCTGGGCAGCACCGATGGAGGACGCCGGGTTCTGGCTTATTTTTCTCGGTCCGCATGGCCGCACAGGGGCGTCCATGGA
GGTGCGCTCCAGCACGACGTCGCCGACTCCAGCGCTGGCGGGCGGCGGCAAGGCGTCAGAGGAGGGACGAACCGTGATGG
CGTGCGCATCGACGCGGCAAAACAATGCCTGCACGCTCGAGGATGTGGGAGAGCGGCGCAGCGCGAGCCACTGGTCGACA
CGGCAGACCCGCGTGCCGGCGACCTTACGGCGATGGCGGCCAGGAGGTGCAAGACGCGGCGGCGGAGCACGCGTACATCG
GCTGCACGGGCCTGCTGGACTTCGCCCACAAATCCTTGGTAATTGCGTCAGTTGGCGGCTAAGTGCTGCGGCGCGCCATG
AATCCGGTGACCAAGGTGCTCGTGTTCTTGCTGAAAGCTGACTCAACCTTTGTTATGCAGCGACGCAGCGTATTCACGTA
GAAGCTTGCTCTGAAGCAAGCATGCATGTGGATGAATTTGCCAGGAGCTGACGTACGTAGTTTGCCATGCACCGTAGTGC
TGGCTTCTGCAGCATCGCTCGGCGCGACAGTAAAGCGGAAGATGGTTATGACGTGTAGGACCGCTGAGTCAGTGAGAGAA
CCTGTAATCCCGGCTGGGATTTTCTTTTCTCAAGTGCGGCAAACAGGTCTAGGATCGGGGTAGGGTTGATATTGACCGGG
ATTAGAAAGGTTTTTTTTTTTGAGGAAGGATCAGAAAGGTTGGGGTACAGATTTCAGGGACTCAAACGTTCAGGTTCGAT
TCCGACAAGCTCTACGAGTTTAAGGTTTAAAACAGACTTTCCTCCCTCGAGGCTCAGGCAAACGTGACCGGCAGCAAAAG
ATCAAGCACGCGCCGTCCCTGTCAG------GCCGCACAAGAGCACGCTGCTTCAGCGCAGTCGCGCCGATGGCGATTCC
GGCCGGACCCGG
>chr2A_5
ACCGTACC-----GTACAGCGAGTCCCCATGGCCGGCCTGTAGACGTG------------CCCGGAAGGATGTGCCCATA
TCTGGGCCACCCCTGCTCCTCCCCCGTTGGCAAGACTTCAAGTGGAAGACAAGTTGCCCCGCGGCGCAAACAA----AAG
AAAAATGGCGCGCCCCGACACGTTAACATGCAGGGAAGATGCTTGTGAC-CTGCGACTGCCCGACGGCCGACGGGTGACG
GATACGGGAGGAT-------------CTCCATCGAAAAGGCCACGG---------------------AGGCCCGTCAGCT
TTCCTCCGTTGGTTCCGGCAGCGGCCGGTGGAG----CTCTCTCTGCCCGTCGGGGGATTTGCTTCCCGTTTCGTCCCGT
CCGGTTGCCTTTTTCTTCCCGTTTCGTCTCGTCCGGTTGCCTTTTCCTCCCGTTTCGTGTGCAGTAATGCAGTGCAGGTG
GTGGCTCTGTGCCTTTGCGTGCATGCTGCAGCCTTCCGCTCGCCCGAGCCGAGCCATCTGCATTTGCTGCCGGCCGGTGC
CCCGATTCGTGTGGCGCCGTGCTGCCGCCCATCATGTTTTTTACTGCTGGCCCAGTCGCACGCCGTTTGACCGGACGCTC
CTTTTCCTGCCCGTGGTCTTTGCACAATGCAGCAGATACTGGTCAATTTCCCCAGTACTGTCCCAACATGTGAACATGGA
CCCACATGTCATCCCTACACTAATCTC---------------GCAGTTCAAGTTA--ACACACTCTACTATAGTACCATT
AATTGGACA-GTAGGACAACGAACGAACAATCAG-TGAAGCGTAAAACGG-TTTGAACACAACATTCTACCGTCCTTCCG
TTCCGTGCGTACCTGCAGAAAAAAGATCGGAGTTTTGATTTCGCTGGCTGGAACAAGAATAAAACCGGAAGCTC-----T
CGCTCGTCTCGTTTGCTTGTCGCTTTAAAAAGAGAGAAACCGACTTGGCGGTGCGTGGGTT-----GGCTTTAACCACTA
CTACACTCCTCCCGCCTTAAA-TGGCCTCCCCCTCCCCTCCGCCGCCGC---CCGCCGGCGACCAGCGGCCCCACCACCC
CCTCCTCGCCGCGGCCGCGGCCGCCTCCCTGCTCGCCGTCCTCTACCTCCCGCGCCCACTCCTGCAGCTGCTCCTCTCCC
CCGCCCCGCTCTCCTCCGTCCTCCTCCTCGTCTACCTGCTCCGCCTCGGCTCCCCGCCACCTGCCGCGACCCTAGCTCCT
CCTCCTTCCCCGCCGCAGGAGAGAGCCCAGGAGGTCGCCCCGCCTCCGCCTCCGCCTCCCCCGCCGCCGCCGCCGCCGCC
GGTGAAGCCCCAGAGCGTGTTCCTGGAGCCCGAGTTCGCGTCGTGGGCGCCCAAGGGCCGCGCCCTGGAGGTGATCCACG
AGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTGCCCTGGACGTCGGACTCCGACTCGGACAGCTGCAGCGGC
AGCGACGACTACGACGACGGCGGCAGCGGCGGCGGGGAGGAGTACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCT
CATCGAGATCGACATCTCGAGCTGCCGGTGATGGATTC-CCCCGACATTCCGACCGGTTTTCC--------TTCTCTTGC
GTTGGCTTTGACAAAAACCAAATACATTTTGCTGATTCGGCGTGTGAATTCGAGTGCCGTTCTTTATTCTCTTCAT---T
ACTTAGATGCTTCCCTGCAATGTACATAGGCTGGTCACTGGTGAGCTGAGAAAGATACTACCGAGTGAGGAAGGCTTGCT
AATTTTTGGTTCATCTGAGATGATGGCGAGTTTAGTTTGATCCTGCTACTACTTACTAGTTTTTGTGCCATGTTAATCAC
TTGTCACCTCAAGGAAGGAATCAACTTGTGATGCTTGCATTGGTCTTTCTTTATCCAAGCATCTTGAGCTAGTGTCTACT
ATGATTAGCACTACAAGATCGTCCGGTTTTTGTTCTTGTTCTGACAAGATTTGCAATCATGCACCACATTGCGCGGCTGG
CGTTTTACTATATTCGAGTGCAGATTGTGCTTGAGTTTCATGTTACGATAGATAGCTTGGTGATACACTGAGGCTGGTCA
TAGTGGAGAGTAACTTAGACTAGTAACATGTATATGTTACTAGTCTATATTACTACCTTCATAGTGGGTAGTATCATATA
TGTGGTAACATAGATGTCTTTATTTATTGCTTTGTAGACTCATTTTGCATTGGGAAGCGCTATGTGATGGTAACATATTA
TGTTACTCTATTTGCCTCTCTCTTCATTAACTAATTGCCACCTCATCACTTTTGCTTGTGTGGCATCTAAGTTACTACCT
ATGTTACTCCCACTATGACCAGCCTGATACTACTAGCTAGCTGCTTGGATCTGGAGAAAATCATTAGTAGCTTGGCGACA
CATGTGTAAAGATGGGGCCGGTGGTTGGTGGTTGGGATGGATCCGTTAAGTTTGCTCACGAAATTAGGTCGATTTCCGAC
CACGAGAACATACTCCTGCTGTGCCATC----TAAACATGTTCAATTAATACTGACAGGCTGCTTTGCCTCCCTTTAGAA
ATACATAATCAAGCCACTGATAACTAGGCTATATATGGAAATCCATAGGAGTATGTACCACAAGTTGTTTGAAGGGAACT
TATTCAATTCGAAACCAGTTGAGTTGCTACTTTTCTATGGCGGATAGTACCAAATCGGAGCCGCATGTCCTGACGCGTAG
GCTGTCGTATCGTATCGTCTCAG---------------------------------------------------------
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--------------------------------------------------GGCTCACGCAAACGTGACCGGCAGCAAAGG
ATCAAGCACGCGCCGTCCCTGTCAGCGTCACGCTGCACAAGAGCACGCTGCTTCAGCGCAGTCGCGCCGATGGCGATTCC
GGCCGAACCCGG
>SNPs
S-SSSS-SSSSSS-----------------------------------S----------------------S--------
-------------------------------------------------------------------------SSSS---
------------------------------------------S--S--SS------------------S-----S-SSS-
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---------------------------------SSSS-------------------------------------------
--S------------------------------------------------------S----------------------
----------------S---------------------------------------------------------------
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---------S-----------------------------S----------------------------------------
-------------------------------------S-----------------SS-----------------------
--------SS----------------------------------------S-----------------------------
-----------------------SSS-S----------------------------------------------SSSSS-
-----------------------------------S-------------------------------------------S
---------------------S----------S----------------SSS------S---------------------
----S---------------------------------------------------------------------------
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-------------S------------------------------------------------------------------
------------------------------S--------------------------------S----------------
----------------------------S---------------------------------------------------
--S-----------------------------------S-----------------------------------------
---------------------S---------------SS------------------------SSSSSSSS---------
------------------------------------S-------------------------------------------
-----------------------------------S---------SS---S-----------------------------
-----------------------------------------------------------------------------S--
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--S-----S--------------------------------S--S---S-------------------------------
-------------------------S-----------S------------------------------------------
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----------------------------SSSSSSSSS-------------------------------------------
----------------------S------------S------------------S-------------------------
----------------------SSSSS-SSSS-------------------------------------------S-S--
-S-SS---------------------------------------------------------------------------
----------------------------------------S----S-S--------------------------------
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--------S-----------------S-----------------S-S--------------------------S------
----S-------
>forward_956
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--------------------------------------------------------GAATAAAACCGGAAGCGCGT----
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>reverse_2436
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-----------------------------------CTGCTGCTTGGATCTGGAGA-------------------------
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