>input_sequence_76161
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----------ATGGCCCGCGCCGCCGTGGACCGCAGCGCCGGCCGGTGCGAGTCCTACCGCGGCCGCGCGGACGCCGATT
TCCTCATCTATCTCGGCGACAGGTACCAATCTATAAATCCCTCCCTTCACGTACGTAATCAAGCCTCAGTATGATTATG-
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-------------------------------------------------------------ATCAAACCTCTCCGGTCGA
TT------------------------------ATGGATGCAGCGCGCCGTCGCTGAGGAGCCTCCACGTGACGAGCTCGC
TCTACAGGGGTGAGGGAGACCTAGTCACGGCGGCGATCAAGAAGCTCCCGCTGCTGGAGCAGCTGGCGCTGTCGCGCGGC
ATCGTGAAGAAGGAATGGCTGGTGGCCCTCCTCGAGCACTGCCCGCGCCTCGAGCTGCTCGACGCCGGCGGCTGTGTGGC
CCTTGAGTTGATCGGCAAGAGGCTCGTGGAGAGGTGCGAGAGCAGGATCGGTAAGGGACTCCGGTGGCCGCAACGGGGTG
ATGGCGTGTGCCCTTGCTGCGCCATGCGTGCTCAGATATACTCCCTCCGTTCGGTAATAGTACGAGGGTGCTTGGATACA
AGGAACTATTTTTAG-----------------------------------------------------------------
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>chr6A_1_TraesCS6A01G133600
CCAGGTTTACGGGGATATGATCTTCTCGTATAATTTTGACGGGCTAGAAACCGCCAGAAGCTTCACCGGCGCCCCGCCGG
AACACTGCCGCCACCTGCGTCACCGCCCGCACCGCCCCTCTCCCGCGGTTGTCCCGCACCCGCGCTGCCGCCCACCACCA
CG----------CCGTCCCTCGCCGACGGCCATCACACATGTCATTGTGTGGCGGGTTCTACGCCATTATCTATTTTTGT
TTAATTAAAAATGACTGCTTTTTGTCCTTGTGCATCATAAAAAGCATGTAGGGACGAGGGAACAGGAGCTACCTGGCATG
CATGCCCGCCAAACATCTTGCATGCTCTCTGTCCTTGTGCATCATAGAAAGCACG-------------------------
---------------------------------------------------------TAGGGACGAAGGGAGCTACCTGG
CATGCATGCCCGCCAAACATCTTGCATGCTCTCTG---------------------------------------------
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----------------------------------TCCATGTGCATCGTGGAAAGCGCGTAGGAACGAGGGGAGCTGCCTG
GCATGCATGCCCGCCAAACATCTTGCATGCTCTTTGTCCTTGTGCATCATAGAAAGTGCGTAGGGACGAGGGAACATGTC
GAGTTGTATGACATGCATGCCCGCCAAAGATCTTGCATGCTCTTTGTCATTGTCATGGATGAGCCC--------------
------------------------GAAAGAAAGCAAGCAAGTGAATTGTTGGACTCGATCTCATAACTTTCACATGAGTT
TTTTACGGGAGTCGTTGGACTCGATCGATCTAAACATACAGGCCAGACCACTCGTCTCGTCATGTAACCATCGCCGCCTC
CAAGTGTGCCGCTATGGACGCTCCTCTCCCTTCGCCGGCGGAGTGGAGGGACTGGGCGGGGCTGCCCAGTAACATCATGT
GCGCGATCCTCAGCCGGCTCCG-CAAGCCGACATCCTCCGCGAGGCGGGAGTTGGACTCGCGTGCAAACCGTGGCGGCGG
GCAGCCGTCGAGGAGGACCTGCTGTGGCGGCGCATCGATCTGGCCGCTCCCGAGGACGCGGACCGGGACGCCCCGGTGGG
ATGGAAGGCCATGGCCCGCGCCGCCGTGGACCGCAGCGCCGGCCGGTGCGAGTCCTACCGCGGCCGCGCGGACGCCGATT
TCCTCATCTATCTCGGCGACAGGTACCAATCTATAAATCCCTCCCTTCACGTACGTAATCAAGCCTCAGTATGATTATG-
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-------------------------------------------------------------ATCAAACCTCTCCGGTCGA
TT------------------------------ATGGATGCAGCGCGCCGTCGCTGAGGAGCCTCCACGTGACGAGCTCGC
TCTACAGGGGTGAGGGAGACCTAGTCACGGCGGCGATCAAGAAGCTCCCGCTGCTGGAGCAGCTGGCGCTGTCGCGCGGC
ATCGTGAAGAAGGAATGGCTGGTGGCCCTCCTCGAGCACTGCCCGCGCCTCGAGCTGCTCGACGCCGGCGGCTGTGTGGC
CCTTGAGTTGATCGGCAAGAGGCTCGTGGAGAGGTGCGAGAGCAGGATCGGTAAGGGACTCCGGTGGCCGCAACGGGGTG
ATGGCGTGTGCCCTTGCTGCGCCATGCGTGCTCAGATATACTCCCTCCGTTCGGTAATAGTACGAGGGTGCTTGGATACA
AGGAACTATTTTTAGTCTGACTAAAAATAGTCTCTTTTAGAGGCTAAAGTCCCATGACTAAAAGTAGTGGGACTAAAACT
TACTAGCCTCACCCATGCTTGGATACAAATACTAAATAGACTAAAATGTGTTAATGAGCATTTATTATCCTCCAAACCCT
CCAATCCCGAACTCGCATGTGTTAAAAGAGAGGAGTTAAATGAGGAGAGAGAGGACTAATCCACATTTTAGTAGGGTTCC
CTTGACTAAAATTTTTTAGTCTCAAGACTAGTTCTAGCCTCTCTTTAGTCAGGGGTGATTGGAACTTTAGCCTCTAAAAC
AAATATATATGTAGCAAGTTACTCATGAAATTTGAAATCACGGCAGAGGAAGCAAGGCGGCAAGCAAGACGGCGAATATA
GAGATGGGAGAGACGCAATAGACAGGAGGGGAGGCACGGAGACACGGGCATATGTTGTGCAGATGGGGAGCATTTCGCCT
TGTGAAGGCACCATGGCGGGATGGAGGTATGCAGAGCGAAACGGCTAAGCCTGTGGGAGTGGCACGGGGCGGCAACGACA
TTGAAGTAGGTGCTGACGGCATTAACGTGAGAGCTCAGGGAGGGAACTGCAACTTTCCTCTCGCCATGGTCCATTAGTAT
GGAGTGCACTATAAAAGAAACCCCAACCTCTAGATATAAATGAATATGTTATATACTCTAGTTCCTTGAGTGCACCCTAA
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-------------------------------------------AAGTTTTAAGGATAGGAGGAGGTATAGGAAATCGGAT
ATCTATTAGAGTGGATTTTTTTTGTCTTCGTGACCTTTATCTTGGCAGTTCTTTTCAAGGTGCTAAAGTTGAACTTGGGT
CTTTCACCTACGCAAGTGGCTAGCCAAGTTTACAGGCCGCGTGTCACTAGGGGCGGGTGGGGGCACGTAGTAAAATTATG
AACTACAAGTAGACACTACAAGAAGGCCGATATCCCACATAGGCATGCGATCACCACGAAGGTAAACAAGCTCATTGATC
CGTTTAACTGAGCAGTGG
>chr6D_3
--AGGTTTACCGGGATATGATCTTCTCGTATAATTTTGGCGGGCTAGAAACCGCCAAAAGCTTCACCGGCGCCCCGCCGG
AACACCGCCGCCACCCGCGTCACCGCCCGCACCGCCCCTCTCCCGCGGCTGTCCCGCACCCGCGCTGCCGCCCACCGCCA
CGCCGCCTCGCACCGTCCCTCGCCGACGGCCATCACGCATGTCACTGTGTGGCGGGTTCTAAGTCATTATCTATTTTCGT
TTAATTAAAAATGACTGCTTTTTGTCCTTGTGCATCATAGAAAGCGTGTAGG-ACGAGGGAACAGGAGCTGCGTGGCATG
CATGCCCGCCAAACATCTTGCATGCTCTCTGTCCTTGTGCATCATAGAAAGCACATAGGGACGAGGAGGGCTGCCTGGCA
TGCATGCCCGCCAAACATCTTGCATGCTCTCTGTCCTTGTGCATCATAGAAAGCGCATAGGGACGAGGAGGGCTGCCTGG
CATGCATGCCCGCCAAACATCTTGCATGCTCTCTGTCCTTGTGCATCATAGAAAGCGTATAGAGACGATGGGAGCTGCCT
GGCATGTGTGCCCGCCAAACATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAGAAAGCGCATAGGGACGAGGGGAGTTGTCTGGC
GTGCATGCCCGCCAAACATCTTGTATGCTCTTTGTCCTTGTGCATCATAGAAAGCGCGTAGGGACGAGGGGAGCTGCCTG
GCATGCATGCCCGCCAAACATCTTGCATGCTCTCTATCCTTGTGCATCATAGAAAGCGCGTAGGGACGAGGGGAGCTGCC
--------TGTCATGCATGCCCGCCAAATATCTTGCATGCTCTCTCTCCTTGTGCATCATAGAAAGCGCGCAGGACAAAG
GAACAGGTCAAGCTCCGCCAGCTGGAAAGAAAGCAAGCAAGCGAATCGTTGGACTCGATCACATAAGTTTCACATGAGTT
TTTTACGGGAGTCGTTGGACTCGATCGATCTAAACATACAGGCCAGACCACTCGTCTCGTCATGTAACCATCGCCGCCTC
CAAGTGTGCCGCTATGGACGCTCCTCTCCCTTCGCCGGCGGAGTGGAGGGACTGGGCGGGGCTGCCCAGTAA--------
-------CCTCAGCCGGCTCCCACAAGCCGACGTCCTCCGCGAGGCGGGAGTTGGACTCGCGTGCAAACCGTGGCGGCGG
GCAGCCGTCGAGGAGGACCTGCTGTGGCGGCGCATCGATCTGGCCGCCCCCGAGGACGCTGACCGGGACGCCCCGGCGGG
ATGGAAGGCCATGGCCCGCGCCGCCGTGGACCGCAGCGCCGGCCGGTGCGAGTCCTAGCGCGGCCGCGCCGACGCTGATT
TCCTCGTCATTCTCGGCGACAGGTACCAATATATAAATCCCTTCCTTTACGTACGTAATTAAGCGTCAGTATGATTATTA
CTCCCTCCATCACAGTATATAGGGCGCCGATGGCGTCGCTCTAGGACCAAGGTGCCTTCTGATAGGCAGGGATTAAGGAG
TCGGTTGTGCTGCGAAATTGATGGCAAGGCGCCTAATGAATCGCTAAAATGAAGCTTGGTAACCTCCCCGTCCAATAAAA
ACTGAAACAGAGTGCATGCATTGGTGGAGCCGTTTCTGAGCGAAATTTTAGCGGGTTTCTTCCTCCTCCCGCGCCATTCC
TTTCTCCCCCGCTCGGTTTCCATCTCCCGCCGATCTGCTGCCAAATACAAAACGAAAATTTCGGAGTTCAAAGCTCCCGC
CGATCCGCTCTATAATTAGCTGCGGCGATGGAGGGACACGTACAGACGGCATCTTCTCTCCTCCCTCCTCTCTCCAATGG
CGCCGCCGCAGCAATGTGCAGATCGCCGGCCTCCTCCTCTTGGCCTCCGTGGGCTTTCTAGGGTTGCTTTCCAGCCGAGA
TCGCCGCCGCCCGGAGGTCTTCCTCCTCTTGGTCTCACCGGACGCTCTGGTGCTCCTTCCTTCTCCATCGGCACGGCAGG
TTTCGAGCGTCTTCCTCCTCCTACAACTTTGCCTCGACGGCGCGTCGGCCTCACACGCCCATCTCGCGCTCCGGCACCTA
ATGAGGCCGGTTCCTCGAACTGGAGTGCCTCCGTCGGCGAGGCCGGTACAGGCAGCGGAGGGTTCGTGGGGTTTCACCTC
ATCAATGGCAGCGGCGGGATCTCGTTTGGCGGTGGCGGTGGCGGTGGCAGCGGGATATCGTTTGGCGGCGGCGGCAGCGG
GAAATTAGACGAATAACGAGTGAATTGAAGCCTGCCTTGACTGCTGCAAATGAAAGGGCTCGTGTGGAGTATGCTCTAAA
GCATCTTGAGCCATGTAGCCTAACGTCCCTAGGCGGTATCAAACCCACATTTAGGGCTGATATGGATCTGGTTCATATAG
ATGAGAAATGGTTTTATCGCACGCGGAAGACCCAGAACATGTATTTGAGCCATAGAGAGAATGCACCACACCGGGAATGT
AAACATAAAAACCACATTCAAAAAATTATGTTCTTGTCCGCAATGGCTAGACCGAGGTATGCTGCTCAAGGCAATTGTGT
TTTTGATGGCAAGATTGGGGTTTGGGCTTACACAGAAATGGTGCAAGCTCAAAAGAAGAGTCAAAACAGCTCCGCACTTG
TTTTTGTTACTACTCCTACTTTGTGCTAAAATTTTATGTGCACATTATTTACTTTGTTTCTATATCCATAAGGTTGAGAG
GGACATGGGAGCTCAAGCCTTGCCATACAGTGGACAGGGAGAAAAGTCGGGAATACTTAGTGAAATACGTACTGCCGGCT
ATAAAGGAAAAGTGGCCTGAGAGCGATAGATGGAACACTATCTACGTACAGCAAGACAATGCTAGGACTCATATAAAACC
AGATGATCCACTTTTTTTGCAGGAAGCTGCTAGGGGTGGTTGGGATATTAGGATGATATACCAACCACCTAATTCTCCCG
ACACAAACATATTAGATCTTGGTTGGTTTGCCTCAATTCAAGCCATGTTCCATAGAAAGATGCCCAAGACCCTAGCCGAG
ATTGTCCAAAAGGTCTTGCAATGTTCCATTTGAGTATTTATATGTTATTTGTGATACATAGCTATTTGCTTATGTAATGA
TTTGAGTTTTCTTGCTGTTATGTGTCATAGGTTAATCAATCCCTAGCTGAGTACCCCCATCAAAAGCTCAACAGGATCTG
GTTGAGTCATCAAGCGTGCATGAGAGAGATCATCAAGCACAAAGGGTCTATCCACTACGCAGTTCCTCACTTGAAGAAAA
AAGCATTAGAGAGACAAGGACTTCTCTCGGTTCGTTTGACGATTGATCTAGAATATGTTGAGCAAGCAATTGAGTTCTTG
AACTCAACATGATTTGTACTGCCTCATGTGATGGTGCTACTATTCGAGTATTAGTTTCATTAATCTTATCAAAAAATTTG
TGGACTGTTTTGAACTGAAAATTTACACCGTAGGGTTTATCATGGAACCATTTTCATATAACGTTACATGACAAGATCAT
ATAAAACAGCTCTTCATATAAGATCATATAAAACCATATTCATACTCATTTTCTTACATAAGATCATGTAATGTTATAAA
CTTGAAACATATATAACCATTACAACTCACTTTTTTTCATCATCTGGCAAATCTAAACTTGACTATTCGGCACATTATGC
GCTTTCTTTTCCTCCTCGAGATAGATAGATGGGTTGCGACGACACCTTATGCATATCCCATCTTTGTTTATCGCCGTCGT
AATCGCACAATCCTTGCACCAATAATTGTCACACAGGCAAGGATTTCCACACGAGGAGCAAGAACGTAAATCTTTTGGAA
CCGGGAGCCTACACCCCGAGCAAAGGAATATAGAAGCCTCACCACGGATGCCACACTTGAGGCACAAAGCCTGATGAATG
CACACCTCACAAGTTGAGGTCGGGTTGGAGTAGGTTTTGCGTACCATCTCTTGCTCTTGCACCATCTCCTTCATGGCATG
AACTTCCACCACGCCTTGCACCTCCTCCATAGTAGCAACCTCCACCATGCCTTGCACCTCCTCCATGGCAGCAACCTCCA
CCACGCCTTGCACCTCCTTCATGGAAGCAACCTCCACCACGCCTTGCACCTCCTTCATGGCAGCAACCTCCACCACGCCT
TGCACCTCCTTCATGGCAGCAGCCTAGGGAGCCGAAGGAGAGAGAGAGGGAGAAACTGAAAGAGAGCAAACTCCACCACG
CCTTGCACCTCCATGGCAGCGGTTTTATACATGTTGCATGCGGGAGCCGAAGGAGAGAGGGAGGGAGAAACTGCATGCGG
GAGTAGGCTCATGTTCACACTTGCATGCCTCACATGCACTCATGTTCACACCTGCATACAGGAGGCAAAAGAATTCATGT
TCCCACTAGCCAAACCATGCATGCGGGAGTACTAATGCTAAGTAATTAATAGCCTAATTAAGGAGGTGCGCCCTATTTCA
AAGGGATTGTGAAAAAAATCTGGTTTTGAAACTGCGCCCTATATACTGTGATGGAGGGAGTATCAAACCTCCGATCGATC
GAGCTAACTGATCGCCATGCCTGCGTACATCCATGGATGCAGCGCGCCTTCGCTGAGGAGCCTCCATGTGACGAGCGCGC
TCTACAGGGGTGAGGGAGACCTAGTCACGGCGGCGATCAAGAAGCTCCCGCTGCTGGAGCAGCTGGTGCTGTCGCGCGGC
ATCGTGAAAAAGGAATGGCCGGTGGCCCTCCTCGAGCATTGCCCGCGCCTCGAGCTGCTCGACGCTGGCGACTGTGTGGC
CCTTGAGCTGATCGGCAAGAGGCTCGTGGAGAGGTGCGAGAGCAGGATCAGTAAGGAACTCCGGTGGCCACAACGGGGTG
ATGGCGTGTGCCCTTGCTGCGCCATGCGTGCTCAGATATAC---------------------------------------
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>chr6B_2118
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-------------------CATTAACATGAGAGCTCAGGAAGGGAACTGAAACTTTCCTCTCGCCATAGTTCATTAGTAT
GGAGTGCACTATAAAAGAAACCCCAACCTCTAGATATAAATGAACCAAA-ATATACTCTAGTTCCTTGAGTGCACCCTAA
GGCCCTGTTTGGTTCATAAGTCCTAGGACTTTTTTAGTCCCAACTAAAAAGTTGCTAGTGCCTAAAAAGTCCCTACACGT
TTGGTTCCTGGGACTAAACATGGACTAAAAGACCATGTTACAACTAAAAGTCCCAAAAAGACTCTCCCTCAAGGTCTTTT
TTCATAAGTCCCAAATGCCTACTTTAAGTCCCTATAAGTCCCTCCTCTTTGGTTTAGATGGGACTAAAAATGATTTTTTT
AAGTCCCTACACCAATAAGTCCCTGTAAACAAACACCCCCTAAAATTTTTAAGGATAGGAGGAGATATAGGAAATCGGAT
ATCTATTAGAGTGGATTTTTTTT--CTTCATGACCTTTATCT-GGCAGTTCTTTTCAAGGTGCTAGAGTTGAACTTGGGT
CTTTCACCTAGGCAAGTGGCTAGCGAAGTTTACATGCCGCGTGTCACTAGGGGCGGGTGGGGGCACGTAGTAAAATTATG
AACTACAAGTAGACGCAACAGGAAGGTCGATATCCCACAGAGGCATGTGATCACCACAAAGGTAAACAAGCTCGTTGATC
CGATTAACTGAGCAGTGG
>SNPs
SS--------S---------------------------S-----------------S-----------------------
-----S---------S--------------------------------S---------------------------S---
------------------------------------S-------S----------------S-S-------------S--
---------------------------------------S-----S------S-----------------S-S-------
------------------------------------------------------S-------------------------
------------------------------------------------------------------S-S-S---S-----
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-------------------------------------S--------S-S-------------S-----------------
---------------------------------S-S--------------------S---------------S-SS--S-
SSSSSSSS--S-----------------S--------------S-S--S----SSSSS--SSSSSS--------------
-----------------------------------------S----S-------------S-----S-------------
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------------------------------------------------------------------------SSSSSSSS
SSSSSSS--------------S----------S-----------------------------------------------
-----------------------------------------------S-----------S----------------S---
---------------------------------------------------------S-----------S-----S----
-----S--SS--------------------S-----------S----S-----------S----S-------------S-
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-----------------------------------------------------------------------SSSSSSSSS
SS----------------------------------------------S-----------------S---------S---
------------------------------------------------------------------S-------------
--------S----------S------------------S--------------------------S----S---------
-------S-----------------------------------------S------S------------S----------
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------S------------S---------S-----------------S--S---------
--------------------------------------------SSSSSS------------------------------
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---------------------------------------------S------------------S---------------
-----------------------SS----S------------S----------------------S--------------
----------S-------------S---------S---------------------------------------------
--------------S-S---S-----S------------S-------S---------S---------------S------
--S---------------
>forward_1365
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-----------------------------------------------------------------CCAGTAACATCATGT
GCGCG---------------------------------------------------------------------------
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>reverse_5349
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--------------------------------------------------------------------CCTCCAAACCCT
CCAATCCC------------------------------------------------------------------------
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