>input_sequence_76156
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGGAGAA
GAAACACATGAAGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTAGAAGTAGTG
CCATCTT-CTATCTATACTGGTGGAAATATTGAACGGAATGT---TCTTTTGTTGAAGCAGGTTCACGAGCTGCATCGCG
TATACGAGGTTCAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGATGAGCCCAGCTCAGGGAAGAGAGGATACTCAA
CCAGAATCGATGATGGATACAGATCGACCACAATGGTACATCAACTCAGGCGAGAAGACCGCTCGTTTCACCGAGGACTT
CAACCTAGAGCTGACACTAGCAACTGGGGGTGATACGAGGAAGCAAGAGATGACATCCAACTCCGAGTCTGGAGCAACGG
TGACATCGTCGACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCCGAGTCCAATGTAGATCTGAGGTTTCAACATGAG
AGCAAGAGGC---ATGATCAGCTCACGCAGTCTCCCTGGCTCTACCAATGTTTAAGTCTCAAGATGGCTTAA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>chr5B_1_TraesCS5B01G107900
TTAGTAGTTTCTCTCGGGAAGCATATAGAGCAAGGAACGGAGATGCAGAATTATGCCGTATTTTCTACTACTCCCTCCGT
CCCAAAATAAGTGTCTCAACTTTGTACTACCTTTAGTACAAATCTGTGCTAAGCTCAAGACACTTATTTTAGGACGGAGG
GAGTATAATTCTACCTCAAAGAA--AAACGGTACTACAGTTGCAGGGTGTAAATTCGGTAGGTTTCAATTTGGGCAGGGA
TGGGTGGGAAACACTGAAAGGCTGATGGAG-TTTGGGTACAGATAGGAAAACCTACATTTTTTTGTAAATCA-AGTACGT
ATATTAGAAGCCAAAATTAGAATTGTGCAAGCATACGAACTTAAAATG-ATCAGACCTAAAAATGCTTCTTACTGTTGCC
TCCACGAACTCAAGATCTTAGCAGTCCTAATTGTCTGACAGACGTGCATAGCTCCCT-----T-CATATGATCTACGACA
GTATTCATGATATATGCTTTATAT-------------------AATTCACAAGGAAAATACGTACCAAACTTTTATATAA
CATTTCTCGACAGAAT-AACAACCAGGTCT-TCCCCATGTTATTTCCCTGTAACAAACCAGTTCACATGCTCACAGAAAA
ACTGATTAATGTGTTAGGTCACATCGCACACCACCATAGCATTTATTTATGCTTGCATAGGATATTAGGATACTCATTTA
CACAACTATACAACTTATTAATTGGCAAAATGGCAAAGCAAGCTGGATACTCCTATGTGGAGAATAATAGAACTTGTACA
GAGCTATAGAGGAGCAAGTACAATCATTCAGAAGCTACACATGAGAGTGTCTCCATCTCAGGGTAGGAGATAATTCACGA
CAAGCAGACACGCAACCAGCACATATACAAAGCTCCAATTATTGCGACGCATATGCAGTATCTTGCTATTGTTGGGAGAA
AAACTTTTGGTGCTCATGTGTCAGGCTCTGATGAAACAGGTGAGGCTGATACTTCGTGTGGGTTGGTGAGAGATGGAGAA
GAAACACATGAAGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTAGAAGTAGTG
CCATCTT-CTATCTATACTGGTGGAAATATTGAACGGAATGT---TCTTTTGTTGAAGCAGGTTCACGAGCTGCATCGCG
TATACGAGGTTCAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGATGAGCCCAGCTCAGGGAAGAGAGGATACTCAA
CCAGAATCGATGATGGATACAGATCGACCACAATGGTACATCAACTCAGGCGAGAAGACCGCTCGTTTCACCGAGGACTT
CAACCTAGAGCTGACACTAGCAACTGGGGGTGATACGAGGAAGCAAGAGATGACATCCAACTCCGAGTCTGGAGCAACGG
TGACATCGTCGACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCCGAGTCCAATGTAGATCTGAGGTTTCAACATGAG
AGCAAGAGGC---ATGATCAGCTCACGCAGTCTCCCTGGCTCTACCAATGTTTAAGTCTCAAGATGGCTTAATGGCTTAG
CTACGGGTGGCTTACAGAAGCATATGCATTATTATATGTACATCAAAAAACTAATTCGTTGCAATCAGAGGAATGCGATC
AATAGGAAGTCATCATTCACATCTACAAAAAATACAACAAAATCATTTCAAAGAGCACCAACACCAAGAAGAAGTGAACG
AACTGTGTAATCGTCTTCTTTCTGCGTACAAGGGAGGGAGATGTACATAAGTATCCGCTAACAAATGTTGCATTGTATGT
AGAGATCTTCAAGCGTAAACCTTGCCTTGTCCACTTTATCTTAGGGACAAGAACAATTTTACC--ACATCTGCATAACTG
GGCACAGACAATTTGGTAAAAACTGCTTGTTTCTAAGTGCAATATGACAAACTTCAGAAAGATGGGAGAAATGCCTAGTG
TCATTCTACCATCCATACAGAAATGCCTAGCCAAAACTGTACGCAAACCAGAAAAGCCTGGTGGATACTACTCTACTGAA
AACGAAATATGCCTAGCAAGCAGTTTGTCTCTGTTTTGGTCGTTGAACATTGAAAGCTTAAATGAGCTAGT-GGTGGTAA
TGACGGCCCCGTCATAGTTCCTAGTAATGCCCATGAAGACTTCCTTTCAGA-ATAACTGGCAGAAACTCAGTCATTTGAT
TATGACTAAGAGCTCGTGATCACCTCCACGCCTGGTTTCTTTAAGCCGGCCATGTATGTTAGGTAGATGGTCCAAAGAAA
CGCAAAGGAATTGCTTACTAGCGGCTGAAAAATAAATCCTCAGTTCAGATTGCTGGCAAAC-AAGTTTGAAGCTCAAATA
GGTAGAATATATCAGGGACTTAACATTACCTGTAAATGAACAGGGATAAACTTGAAAGTGATGAAGTCACAAAGAGGCCA
ATAAATGAGCCCACTTTTGATGGTCGGAATTATATCCCGCTTTAATCTTGCAATGATCTCTGGGATTGTCTCACCTGGGA
ATCATATCGATCAAGCAATTAGAGGACTCATGAGTGT
>chr5D_142
ACTTACATTTGGGA------------------------------------------------------------------
-------------------------------------------------------------------------ACGGAGG
GAGTATAATTCTATCTCAAAGAATCAAACGGTACTACAGTTGCAGGGTGTAAATTCGGTAGGTTTCAATTTGGGCAGGGA
TGGGTGGGAAACACTGAAAGGCTGATGGAGTTTGGGTTACAGATAGGAAAACCTACATATTTTTGTAAAATCTAGTACGT
ATATTAGAAGCCAAAATTAGAATTGTGCAGGCATACGAACTTAAGATG-ATCAGACCTAAAAATGCTTCTTACCATAGCC
TCCACGAACTCAAGATCTTAGCAGTCCAAATTGTCTGACCAACGTGCATAACTCCCT-----TTCATATGATCTACGATG
GTATTCATGATATATGCTTTATATTGCTCTAAAACTCTCAGCCAATTCACAAGGAAAATACGTACCAAACTTTTATATAA
CATTTCTCGACAGAAAAAACAACCGGGTCT-CCCCCATGTTATTTCCCTGTAACAAACCAGTTCACATGCTCACATAAAA
ACTGATTAATTTGTTAGGTCACGTCACACACCACCATAGCATTTATTTATGCTTGCA--------TAGGATACTCATTTA
CACAACTATACAACTTATTAATTGGCAAAATGGCAAAGCAAGCTGGATACTCCTATGTGGAGAATAATAGAACTTGTACA
GAGCTATAGAGAAGCAAGTACAATCATTCAGAAGCTACACATGAGAGTGTCTCCATCTCAAGGTAGGAGATAATTCACGA
CAAGCAGACACGCAACCAGCACATAAACAAAGCTCCAATTATTGCAACGCATATGCAGTATCTTGCTATTGTTGGGAGAA
AAACTTTTGGTGCTCATGTGTCAGGCTCTGATGAAACAGGTGAGGCTGATACTTCGTGTGGGTTGGTGAGAGATGGAGAA
GAAACATATGAAGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTACAAGTAGTG
CCATCTT-CTAGCTATATTGGTGGAAATATTGAACGGACTGT---TCTTTTGTTGAAGCAGGTTCACGAGCTGCATCGCG
TATACGAGGTTCAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGATGAGCCCAGCTCAGGCAAGAGAGGATACTCGA
CCAGAACCGATGCTGGATACAGATCGACCACAATGGCACATCAACTCAGGCGAGAAGACCGCTCGTTTCACCGAGGACTT
CAACCTGGAGCTGACACTAGCAACTGGGGGTGATACAAGGAAGCAGGAGATGACATCCAACTCCGAGTCTGGAGCAACGG
TGACATCGTCGACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCCAAGTCCAATGTAGACCTGAGGTTTCAACATGAG
AGCAAGAGGCATGATGATCAGCTCACGCAGTCTCCCTGGCTCTACCAATGTTTAAGTCTCAAGATGGCTTAATGGCTTAG
CTACGGGTGGCTTACAGAAGCATATGCATTATTATATGTACATCAAAAAACTAATTCGTTGCAATCAGAGGAATGCGATC
AATAGAAAGTCATCATTCACATCTACAAAAAATACAACAAAATCATTTCAAAGAACACCAACGCCAAGAAAAAGCGAACA
AACTGTGTAATCGTCTTCTTTCTGCGTACAAGGGAGGGAGATGTACATAACTATCCGCTAATAAATGTTGCATTGTATGT
AGAGATCTTCAAGCGTAAACCTTACCTTGTCCACTTTATCTTAGGGACAAGAACAATTTTACCTAACATCTGCATAACTG
GGCACAGACAATTTGGTAAAAACTGCTTGTTTCTAAGTGCAATATGACAAACTTCAGAAAGATGGGAGAAATGCCTAGTG
TCATTCTACCATCCATACAGAAATGCCTACCCAAAACTGTACGCAAGCTAGAAAAGCCTGGTGGATACTACTCTACTGAA
TACGAAATATGCCTAGCAAGCAGTTTGTCTCCGTTTTCGTCGTTGAACATTGAAAGCTTAAATGAGCTAGT-GGTGGTAA
TGACGGCCCCGTCATAGTTCCAAGTAATGCCCATGAAGACTTCCTTTCAGAAATAACTGGCAGAAACTCAGTCATTTGAT
TATGACTAAGAGCTCGTGATCACCTCCACGCCTGGTTTCTTTAAGCCGGCCATGTATGTTAGGTAGATGGTCCAAAGAAA
CGCAAAGGAATTGCTTACTAGCGGCTGAAAAATAAATCCTCAGTTCAGATTGTTGTCAAAC-AAGTTTGAAGCTCAAATA
GGTAGAATATATCAGGGACTTAACATTACCTGCAAATGAACAGGGATAAACTTGAAAGTGATGAAGTCACAAAGAGGCCA
ATAAATGAGCCCACTTTTGATGGTCGGAATTATATCCCGCTTTAATCTTGCAATGATCTCTGGGATCGTCTCACCTGGGA
ATCATATCGATCAAGCAATTAGAGGACTCATGAGTGT
>chr5A_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGTACAGATAGGAAAACCTAAATATTTTTGTAAATCCA-----GT
ATATTAGGAGCCAAAATTAGAATTGTGCAGGCATACGAACTTTAAGATCATCAGACCTAAAAGTGCTTCTTGCCATTGCC
TCCACGAACTCACGATCTTAGCTGTCCTAATTGTCTGACCGACGTGCATAGTTTCTGTTACCTTCATATAATCTTCGATA
GTAT-CATGATATATGCCTT---TTGCCCTAAAACTCTCAGCTAATTCACAAGGAAAATA----CCAAACTTTTATACAA
CATTTCTCAACAGAAAAAACAACCTGGTCTGCCCCCATGCTATTTCCCAGTTACAAACCAGTGCACATGCTCAGAGATAA
ACTGACTAATGTGTTAGGTCACATCACACACCACCATAGCATTTATTTATGCTTGCA--------TAGGATACTCATTTA
CACAACTATACAACTTATTAATTGGCAAAATGGCAAAGCAAGCTGGATAGTCCTATGTGGAGAATAATAGAACTTGTACA
GAGCTATAGAGAAGCAAGCACAATCATTCAGAAGCTGCACATGAGGGTGTCGCCATCTCAACGTAGGAGATAATTCACGA
CAAGCAGACACGCAACCAGCACATAAACAAAGCTCCAATAATTG-AATGCATATGCAGCATATTGCTATTGTTGGGAGAA
AA-CTTTTGGTACTCATTTGTAAGCCTCTGATGAAACAGGTGAGGCTGATACTTCGTGTGGATCGGTGAGAGATGGAGAA
GAAACATATGAAGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTAGAAGTAGTG
TCATCTTCCTATCTATATTGGTGGAAGTATTCAACGAGGAATGTGTCTTTTGTTGAACCAGGTTCATGAGTTGCATCGCG
TATACGAGGTTCAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGAGGAGCCCAGCTCAGGCAAGAGAGGATACTGAA
CCAGAACCAATGCTGGATACAGATCGCTCACG---------------------------CGCTCCTTTTATCGAGGACTT
CAACCTGGAGCTGACACTAGCAACTGGGGGTGATACGCGGAAGCAAGAGATGACATCCAACTCTGAGTCTGGACCAACGG
TGACATCGTCGACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCTGAGTCCAATGTAGACCTGAGGTTTCAACATGAG
AGCAAGAGGCATGATGATCAGCTCACGCAGTCTCCCTGGCTCTATCAATGTTTAAGTCTCAAGATGGCTTGATGGCTTAG
CTACGGGTGGCTTACAGAAGCATATGCATTATTATATGTACATCAAAAAACTAATTCGTTGCAATCAGGAGAATGCGATC
AATAGGAAGTCATCATTCACATCTA-AAAAAATACAACAAAAACATTTCAAAGAACACCAACGTCAAGAAAAAGTGAACG
AACTGTGTAATCACCTTCTTTCTGCGTACAAGGGAGGGAGATGTACATAAGTATCCGCTAACAAATGTTGCATTGTATGT
AGAGATCTTCAAGCGTAAACCTTGCCTTGTCCACTTTATCTTAGGGACAAGAACAATTTTACCTAACATCTGCATAACTG
GGCACAGACAATTTGGTAAAAACTGCTTGTTT-----TGCAATATGACAAACTTCAGAAAGATGGGAG-AATGCCTAGTG
TCATTCTACCATCCATACAGAAATGCCTAGCCAAAACTGTACGCAAACTAGAAAAGCCTGTCGGATACTACTCTACTGAA
AACGAAATATGCCTAGCAAGCAGTTTGTCTCTGTTTTGGTCGTTGAATATTCAAAGCTTCAATGAGCTAGTTGGTGGTAA
TGACGGCCCCGTCATAGTTCCAAGTAATGCCCATGAAGACTTCCTTTCAGAAATAACTGGCAGAAACTCAGTCATTTG-T
TATGACTAAGAGCTCGTGATCACCTCCACGCCTGGTTTCTTTAAGCCGGCCATGTATGTTAGGTAGATGGTCCAAAGAAA
CGCAAAGGAATTGCTTACTAGCGGCTGAAAAATAA-TCCTCAGTTCAGATTGCTGCCAAACAAAGTTTGAAGCTCAAATA
GATAGAATATATCAGGGACTTAACATTACCTGCAAATGAACAGGGATAAACTTGAAAGTGATGAAGTCACAAAGAGGCCA
ATAAATGAGGCCACTTTTGATGGTCGGAATTATATCCCGCTTTAATCTTGCAATGATCTCTGGGATTGTCTCACCTGGGA
ATTATATCGATCAAGCAATTAGAGGACTCATGAGTGT
>SNPs
SSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-------------S------------------------------------------------------------------
---------------------------------S------------------------S------------S--------
-----------------------------S-------------------------------------------SS-----
---------------------------------------S--------------------------------------S-
--------------------------------------------------------------------------------
---------------S--------S------S------------------------------------------------
-------------------------S-------------------------------SSSSSSSS---------------
--------------------------------------------------------------------------------
-----------S------------------------------------------------S-------------------
-------------------------S-------------------S----------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-----------------S--------------------S-----------------------------------------
---------------------------------------------------------------S----------------
------S-----S-----------------------S-------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------S-------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>forward_46
--------------------------AGAGCAAGGAACGGAGATGC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>reverse_1367
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGAGCTGACACTAGCAACTGG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>forward_86
------------------------------------------------------------------ACTACTCCCTCCGT
CCCAAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>reverse_1735
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GCACCAACACCAAGAAGAAGT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
