>input_sequence_76139
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-------------------------------------------------ATGTCCTCCGCCTCCGCCCCCGCCCCCG---
---------ACTCCGATCACTGCGACGCCGGAGCCATCATGGCCGACGTCCTCTCCAAGGGCCGCGAATCCTGCTACAAG
GTAACCCCAAACCCTATCTCCGCTCCCGCTAACCCCGTCGCTCCCGCTTCCTTTTCCTCCCCATT---------------
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---------------------------------------------------GCTGACGCAAGCGCTTCGATCCTCCACCC
CAAGGCCCGGGACGCCTTCTACGCGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCC
TCTTCCCCGCCGACTGCAAGAAATCCCGCGCCCAGTACGTCAGCAGCTGCCGCCCCTCCTGGGTAAACATCACAATCCCC
ATCCGCCTCGTGGCCAGCCGCCA-TCCCTCCATGATTCGCGTCCGCGCTTGCTTCTCCTGACGCTC---GGTTTCGGATT
CCTT-GCCAGGTGAGGCACTTCGACCGGCAGCACTGCGCCAAGAAGCGGGTGCAGAGGCTGCTCGACGGCGACGACGACG
GCCGGGGTCCCATGTCGCTGCCCCAGCCCTACACGTTCAAGCAATAA---------------------------------
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>chr7D_1_TraesCS7D01G368200
TGGCAAATTTGAAAGTTGTGTGTTGAACAATGTATATGTGAATCGTGTCCAGAGGATATGGCATCAAATTACAGGGAGGT
TTTGTCACTTTTTGAATTAAATTTTCAAAATAAACAACTGTCCAGAATTGCATGCTTACAGGGGAAGTTCTGCCCAGTTT
TGCAATCAACAACAGCAAAAATGTTATTGCTCCCCATGTGAATGATTTTGTTCAAAAGTTGCATTAGGGGTAAGATCATC
TTTTCATGTGTCATTTAACATCATTACTACTCAAAATAGACGGAAGTGTCACAAAGGGAACACATTTTAGCATTGTTGTT
AGATAAGGAAGAAAAGGTATTCCAGCGTCAACTAAGGCAAAAAAAATTAAGCCAGTGTTAAATAAGGAATTCTCTCTATG
ATGAAGACATATGATCAAGTCGAATGGGGCTTTCTAGAAGCAATGCTACCTAAGATTGGTTTCCCGAGGAGGTGGATTGA
TATGATTATGAATTGTGTTACTTCTATTAAGTTTTCTGTTCGGTTGAATAAAGAGTGTCAGATGTTTTTTCTCCATCAGC
TGGTCTCCGGCAAGGTAACTCTCTCTCGGCTTATCTTTTTTTCTGTTTTGTGTTGAGAGTTTCTTTGCTCTTCTCAATAG
GGTTTCTCTGCTCTTCTCAATAGGGCTGAAAGAGACAAGAGGCTTCAAGGAGTTGAGTTCGGGATGGACGGCCCAATGTG
AAAACAAATAAAACTAATGTAAAATAAAATAAAATAATAGGGAGACCGGTGGAAAAACAGATTAAACCAAAGAAAAAAAA
TAAAAGAAAACGAAAAAAAAAC-------CCCGAAGAAAACAGAAACTATGCGAACCTACACGTCCCGCC-TAATGGGCT
GGGCCGCTAGTCGTTGCCAGTAGGCGATTCCTACACGTCCCGGCGGCCAGCGCCGGCCCACCCAGCGCCTTTCCCCTGCC
CCAAGGGAACCTCTGCAAACAAAAT-CCCCACCCCTACCACGGCCGACGATGTCCTCCGCCTCCGCCCCCGCCCCCG---
---------ACTCCGATCACTGCGACGCCGGAGCCATCATGGCCGACGTCCTCTCCAAGGGCCGCGAATCCTGCTACAAG
GTAACCCCAAACCCTATCTCCGCTCCCGCTAACCCCGTCGCTCCCGCTTCCTTTTCCTCCCCATT---------------
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---------------------------------------------------GCTGACGCAAGCGCTTCGATCCTCCACCC
CAAGGCCCGGGACGCCTTCTACGCGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCC
TCTTCCCCGCCGACTGCAAGAAATCCCGCGCCCAGTACGTCAGCAGCTGCCGCCCCTCCTGGGTAAACATCACAATCCCC
ATCCGCCTCGTGGCCAGCCGCCA-TCCCTCCATGATTCGCGTCCGCGCTTGCTTCTCCTGACGCTC---GGTTTCGGATT
CCTT-GCCAGGTGAGGCACTTCGACCGGCAGCACTGCGCCAAGAAGCGGGTGCAGAGGCTGCTCGACGGCGACGACGACG
GCCGGGGTCCCATGTCGCTGCCCCAGCCCTACACGTTCAAGCAATAAGTGGCGCTGACGATGGGCCTGTCCTTTGTGCGA
ACCAAATCTGGCCGAGATGGTATTGGTTTATTGTTCTCTAGTCAGTACTGTCGAGATGGATGCTTATCTGCTGCCTAGTA
TGTTGAAGAAATTGTGAACCTGTGACTTCGTAGCGATCATGACCGTTGTTGTAGTGCTCCTGTTATCCTTTGATGAGAAT
TATGTTGCGGTACTGTCTGTAGACATTAGATCACCTCCTGTTTTTTAATGCTCTGTTTCAATGGATGAAAGTTGGGATGT
GGAATAATATTGTGGAGGGAGGGTTATTGCCAGGTGCCATTTA-AATACAGCTATAGCAACTTTTCACCAATTAGTTTGC
CGTATATAAATTTAAGGGAAATATTGCTCGGCGCTGTCACGCAGATCACCAAACTGGAAAGTACCATCCAGTGTGTTACG
GCTCACGACAAAAGATGGTAGTCTCCACTTTATACCACTTTGGGACGGTAGAGCTATTTTCCCT-TTGTAACTTTTAAAA
TATATGTTATT--TCTCTCTTTACAGTGGAACCTATAATTTTCATTTG--------------------------------
--------------------------------GACCTGTATTTGGAAATTC---CTACTTTCTAAGTGCTCACTTTATGG
GTGACCTTCCATTGTTTGTG----TATGAAGTCATTATTGCCCCATCTCTGTTTCAGCATTGTTCAATTGATACCTCATT
AACTAATCCTTATGAATTGTCTATGCATGGAAGCCATTGTCTTTTCCAGTGTCATTTTTTTTCTTGAATGG------CCA
TCACAATGCTAAACAGATA---AACTCACTTAGTAAATGTATATTTTACTTATGTGGCTATTTCTGTCTAGCTTTTCAAT
GCGTCAGAGAAGAATGCTTTGGTGATTTTGAGACCTTCATCAGATTCTTCGAACATATTATGCCAAATTAGAAATGAGCC
ACTTCTTGGCCCATCAAAATTCCATCTTAGCTTT-CCCTGGACCTTATTAGGAGATCATTTTAGTCTTTTAGCATGTTTA
GGGCATCTTATG
>chr7A_720
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-------------------------------------------------------------------------------G
AAAAAACAGAAGACGAAAGTAGAATAAAATAAAAACCAAAGGAG-CCGGTGGAAAATAAATTAAAACCATAGAAAAAACG
--AAAGAAAACGGAAAAAGAAAAAGAAAACCGGAAGAAAACCGAAACTATGAGAACCTACACGTCCCGGCGTAATGGGCC
GGGCCGCTAGTCGTCGCCAGTAGGTGATTCCTACACGTCCCGGCGGCCTGCGCCGGCCCACCCAGTGCCTTTCCCCTGCC
CCAAGGGAACCTCCGCAAACAAATT-CCCCACCCCTACCACGGCCGACGATGTCCTCCGCC------------CCCG---
---------ACGCCGATCACTGCGACGCCGGAACCATCATGGCCGACGTCCTCTCCAAGGGCCGCGAGTCCTGCTACAAG
GTAATCCCGAACCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGACGCAAGCCCTTCGATTCTCCCCCC
CAAGGCCCGAGACGCCTTCTACGCGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCC
TCTTCCCCGCCGACTGCAAGAAGTCCCGCGCCCAGTACGTCAGCAGCTGCCGCCCCTCCTGGGTAACTATTCTAATCCCC
ATCCGCCTCGCAGCCAGCCGCCAATCCCTCCATGATTCGCGTCTCTGCTTGCTTCTCCTAATAACAATTGGTTTCGGTTT
CCTTCGCCAGGTGAGGCACTTCGACCGGCAGCACTGCGCCAAGAAGCGGGTGCAGAGGCTGCTCGACGGCGACGACGACG
GCCGGGGTCCCATGTCGCTGCCCCAGCCCTACACGTTCAAGCAATAAGTGGCGCTGACGATGGGCCTGTCCTTTGTACGA
ACCAAATCCGGCCGAGATGGTATTGGTTTATTGTTCTCTAGTCAGCACTGTCGAGATGGATGCTTATCTGCTGCCTAGTA
TGTTGAGGAAACTGTGAATCTGTGACTTCGTAGCGATCATGACCGTTGTTGTAGTGCTCCTGTTATCCTAATGACCTCGG
TACTCATGGCCTTCC--------------------------------ATGCTTTGTTTCGATGGATGAAAGTTGAGATAT
GGAATAATATTGCGGAGGGAGGGTTATTGGCAGGCGCCATTTAGAATACATCCATAGCAAGTTTTCACCAGTTATTTTGC
CACATATAAATTTAAGGGCAATATTGCTCGGTGCCGTCACAGTGATCACCAAACTGAAAAGTACCATCACGTGTATCACG
ACTCACGACAAACGTTGGTAGTCTCCACTTTATACCACTTCGGGATGGTAGGGCCATTTTCTTTCTTCTAACTTTTAAAA
TG--CGTTATTCCTCTCTCTACAAAGTGGAACCTATAATTTTCATTTGAATTATAGAATGGCCTATACTGGTTCATGCAC
A---AAAATGTTATTCTTAACTCCAAAATTTTGACCTGTATTTGAAAATTC---CTACTTCCTAAGTGCTCACTTTATGG
GTGACCTTCCATTGTTTGTATATATATGAAGTCACCATTGCCCCATCTCTGTTTCAGCATTGTTCAATTGACACCTCATT
AACTAATCCTTATGAATTGTCTATATTTGAAAGTCATTGTCTTGTTCAGCGTTCCTTTTTTCTTTGAATAA------CCA
TCACAATGCTAAACAGATA---TACTCATCGAGTCAATGTAGCTTTTACTTGTGTGGCTATTTCTGTCTAGTTTTTCATT
TTGTCAGAGAAGAATGCTTTGGTGATTTTGACTG--TCATCAGATTATTCGAACAGATTATGCTGAATTAGAAATGAGTC
ACTTTTTAGCCCATCAAAATTCCATCTTAGC-TT-CCCTGGACCTTATTACGATATCATTTTAG----------------
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>chr7B_862
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--------------------------------------------------------------------CC-TAATGGGCC
GGGCCGCTAGTCGTCACCAGTAGGCGATTCCTACACGTCCCGGCGGCCTGCGCCGGCCCACCCAGTGCCTTTCCCCTCCC
CCAAGGGAACCTCTGCAAACAAAATCCCCCACCCCTACCACGGCCGACGATGTCTTCCGCC------------CCCGCCC
CCGCCCCCGACTCCGACCACTGCGACGCCGGAAGCATCATGGCCGACGTCCTCTCCAAGGGCCGCGAATCCTGCTACAAG
GTAATCCCGAACCCTATCTCCGCTCCCGCTAACCCCGTC-------------------CCCCATT---------------
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---------------------------------------------------GCTGACGTAAGCGCTTCGATCCTCCACCC
CAAGGCCCGGGACGCCTTCTACGCGTGCGTGGAGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCC
TCTTCCCCGCCGACTGCAAGAAGTCCCGCGCCCAGTACGTCAGCAGCTGCCGCCCCTCCTGGGTAACCACTATGACCCCC
ATCCGCCTCGCAGCCGGCCGCCA-TCCCTCCATGATTCGCGTCTGCGCTTGCTTCTCCTAACGCTC---GGCTTCGGTTT
CCTT-GCCAGGTGAGGCACTTCGACCGGCAGCACTGCGCCAAGAAGCGCGTGCAGAGGCTGCTCGACGGCGACGACGACG
GCCGGGGTCCCATGTCGCTGCCCCAGCCCTACACGTTCAAGCAATAAGTGGCGCTGACGATGGGCCTGTCCTTTGTACGA
ACCAAGTCTGGCCGAGATGGTATTGGTTTATTGTTCTCAACCA---ACTGTCGAGATGGATGCTTATCTGCTGCCTAGTA
TGTTGAAGAAATTGTGAATCTGTGACTTCGTAGCGATCATGACCGTTGTTGTAGTGCTCCTGTTATCCTTTGGTGAGAAT
TATGTTGCAGTACTGTCTGTAGACATTAGATGACCTCCTGT--------------TTTCGATGGATGAAAGTTGAGATGT
GGAATAATATTGTGGAGGGAGGGTTATTGCCAAGTGCCATTTAGAATACAGCTATAGCAACTTTTCACCAATTAGTTTGT
CGTATATAAATTTAAGGGAAATATTGCTCGGTGCCGTCACACAGATCACCAAACTGGAAAGTAACATCCAGTGTGTCACG
ACTCACGACAAACGATGGTAGTCTCCACTTTATACCACTTTGGGACGATAGAGCTATTTTCTTT-TTGTAACTTTTAAAA
TG--TGTTATT--TCAATCTTTACAGTGGAACCTATAATTTTCATTTGAATTATAGGATGACCTATACTGGTTCATTATC
CATGAAAATGTTACTCTTAGCTCCAAAATGTGGACCTGTATTTGGAAATTCCTACTACTTTCCAAGTGCTCACTTTATGG
GT-ACCTTCCATTGTTTGTGTATTTAGTCACTATTG-----CCCTTCTCTGTTTCAGCATTGTTCAATTGATACCTCATT
ACCTAATCCTTATGAATTGTCTATACATGAAAGCCATTGTCTTGTCCAGTGTCCTTTTTTTTTGAATGACCATCAGCCCA
TCACAATGCTAAACAGATGATGAACTCACTGAGTCAATGTATATTTTACTTGTGTGGCTATTTCTGTCTAGCTTTTCAAT
GCATCAGAGAAGAATGCTTTGGTGTTTTTGAGACCATCATCAGATTCTTCGAACATATTATGCCAAATTAGAAATGAGCC
ACTTTTTGGCCCATTAAAATTCTATCTTAGC-TTTCCCCGGACTTTATTAATATATCA--------TTTTAGCATGTTTA
GGGCATCTTATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----S-S-S--S--S--S---S------------SSSS-S----S-----------SS-SS-S------S--------SS
SS----------S-----S--S---------S---------S---------S---------------------------S
--------------S---------------------------------S----------------S--------------
-------------------------------------------------------------SSSSSSSSSSSS-------
--------------------------------S-----------------------------------------------
----S---S------------------------------SSSSSSSSSSSSSSSSSSS----------------------
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----------------------S-------------------------------------------S---S-S-------
----------SS-------------------------------S---------------S-----------------S--
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----------------------------------------------------------------------------S---
---------------------------------------------S----------------------------------
------------------S-----------------------------------------------------S-------
-------------------------------S---------SSSSSS-----S------S--------------S-----
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-------------------------------S--S-----S-----------------------------------S---
S-----------S------------------------------------------------SS-----------------
-SSS----------------------------------------------------------------------------
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-----------------------------------S--------------------------------------------
------------------------S----S-------------S---------S--------S------SS---------
------------------------------S---S----------------S----------------------------
-----------------------------------S--------------------------------------------
----S--------------------------S------------------S--S----------SS--------------
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>forward_481
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-------------------------------------------------------------TCCCGAGGAGGTGGATTGA
T-------------------------------------------------------------------------------
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>reverse_1987
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------------------------------------------------------------------ACATCACAATCCCC
ATCCGC--------------------------------------------------------------------------
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>forward_725
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-----------------------------------------------------------------GGACGGCCCAATGTG
AAAAC---------------------------------------------------------------------------
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>reverse_2339
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------------------CCTGTGACTTCGTAGCGATCA-----------------------------------------
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