>input_sequence_76133
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-----------------------------------------------------ATGCCTACTCTGAACGGCGGGGGCGGG
TCCTGCTCACAGGGCGTCGTGGTGTCCCTCGTGTCGGCGCTCGTCTTCTGCGTCCTCGTCGCAACCGTCAGCGCCTGGAA
GGCGTTCGCGTTCACAGGCCTGGCGCTGGCCGCCTTGGTCGCCCTCGAGTGCCTCGCGCCCGAGAGTTGGCGCGACGGGC
GGATGGGCGGCGCGGGCGCCGCCGCCGCCGAGGGCGTGGCTTGGGCCGCATCCCGGCTCGGCGGGCTCGGGAAGGCCGGG
ATCGAGTCGCTGCCCACGTTCGCGTACGCATCCCGTCGCCCCGTGGCCGGTGGCGACCTCGAGTGCGGGGGCGCCCAGGC
CCAGACGTGCTCCGTGTGCCTGGAAGATCTCGGCGACGGCGAGATGGTGCGGCAGCTGCCGACGTGCAAGCACCTCTTCC
ATGTCGGGTGCATTGACATGTGGCTGCACTCGCACACCACTTGCCCTCTCTGCCGTTGCGACCTCTCGCCACAGCGGACG
TGTAACGGCAAGGTGACAGCTGTAGGGATCGAACCGCCTGTTGCTTAG--------------------------------
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-----------------------------------
>chr6D_1_TraesCS6D01G086300
ATTTCCTGTTCAAATGGATCTGGAAGACTTCTAATAGACTTAGGCATAAGATTTTCTTCTGGCTTCTACTCCATGATAGA
GTCAACACCAGAAATTTGCT---GAGGAGGAAACATATGCATCTGGACAACTATAATTGTGCCTACTGTAATAAGCAATC
CGAAGAAACCTTGAGACATCTTTTCTGGGATTGTACCTTTGCACAAGAATGCTGGGAGTGCATTGTTCCAAACAGCAAAC
TAGGAATATCAAGCTCGGATGAGATCATGATACTGCACGTTGCACTTCCAAAAGAATTTGCTCTGGATATTATCATACAG
GGATGCTGGAGAATTTGGACTCTGAGAAATGGAAAAATCTTTAGACAAGAGGTGCCTATAATTAACTGCTGGAAATATTG
GATCAAAGAAGACTTGGCCCTATTGCAACATAGAATCAAAGCAAAGTTTTTGGAAAGTTTCAGGAAATGGAATGCTACAT
A-----GATGTTTGTGGAGGATAAATTAGATTTTTCATAACGTTATCATGTTCCCGAGGCTAGGAATTGGAGAAGTACTC
CCTCTGCAAACTAATACAAGAGCGTTCAGATCACTAAAGTAGTTATCCAAACGCTCTTATATTAGTTTACGGAGGGAGTA
GTTCTTAGTGTTTTATTTTTCTTTTCTTTGTAAATATTTTGTATTCTTGGAGTTAATTAATGGAAAAGTACCGTAGAACA
GTTCTACGGTTTCGGCTTAAAAAAACT-GTGCAGTATCGTTTACCATGG--TAAGCTAGCAATTGCTAATGCATGGTCGG
CGCCTGAAACTTGACCATAATTCAAAGTTTAATCCTATTTCGGGCGCCACGCAGCTACGGGCGGGCGGCTGCCGCGCTGT
ACTTCTCGAGCTCTCACACGCAGATCGACTATATATATTTCCCCACCGCCCGGGCGGAACACCTTCGCTGCCACAGCAAA
CAAAGACAGCCTGTGAAGCAGCCACACATACAAGCAAACGTTAGT--GTGAGCATGCCTACTCTGAACGGCGGGGGCGGG
TCCTGCTCACAGGGCGTCGTGGTGTCCCTCGTGTCGGCGCTCGTCTTCTGCGTCCTCGTCGCAACCGTCAGCGCCTGGAA
GGCGTTCGCGTTCACAGGCCTGGCGCTGGCCGCCTTGGTCGCCCTCGAGTGCCTCGCGCCCGAGAGTTGGCGCGACGGGC
GGATGGGCGGCGCGGGCGCCGCCGCCGCCGAGGGCGTGGCTTGGGCCGCATCCCGGCTCGGCGGGCTCGGGAAGGCCGGG
ATCGAGTCGCTGCCCACGTTCGCGTACGCATCCCGTCGCCCCGTGGCCGGTGGCGACCTCGAGTGCGGGGGCGCCCAGGC
CCAGACGTGCTCCGTGTGCCTGGAAGATCTCGGCGACGGCGAGATGGTGCGGCAGCTGCCGACGTGCAAGCACCTCTTCC
ATGTCGGGTGCATTGACATGTGGCTGCACTCGCACACCACTTGCCCTCTCTGCCGTTGCGACCTCTCGCCACAGCGGACG
TGTAACGGCAAGGTGACAGCTGTAGGGATCGAACCGCCTGTTGCTTAGCCCCGTATACAGACAGGACAGTTTTGTGAACG
TCA-------------AATAAAGTTTGTTT-------AGGGCTCGTGTTTCAGGCTGCCCGCCGGTGGTAGGTGGTACTA
C-------TAACATGTTTTGTCCTGTTCATAAGTAGTGACAGATCCGACTCTTGAAATATAAGATGAGCCTTGCGCCGTC
TAACAATTTCGGAGACTTTTAAGGGGTCATGTTGGTTAATTGACTAGGTGGTCAGAAGTTTAGTAACACCACAGATTTGA
ACGAAGAGTTGGACATGAGGGTGTCTCTTTCATATGCCTTGAGAAGAGAAGTGGTTACCACCCGCTCCTCCGATGCCAAT
CTCGCGCGTGTTGTGTTTCGTGAATGAGTCAAGTTGAGCTCAGACCTATGTCACTCGTGCGCTTACGATTAATATTTGCT
GGTCAGGACTGGAGAGTCCTCAACAAATGAGCCACGGTATTAGACGTCACCTCACCTATATATTGGAGGCGTTGGCCAAC
ACTAGCCTCCACGTGCACTGCCCACCATCGTTCCAATCCCTGTTGTTGTCTCCTATGCGACTGCTCGTCGCCGTTCGTCT
ATGTCCACTACATCATCTATGCCCGCGTGACCTCCGTCACCATCATGTCCATCGCCACGGAAGTCAACCGACTTGTTGCT
GAGAAGGCCACTGCTGACAAGAAGTGTCACACCCCGAGACCGACGTTCCACATGCCTTCCATTTATTTTTGTTGTTCCGT
GTGTTTCAAATTTTGCTGCATTCATCATCGCATCATTCACATTGCATTGGCACTACGTGTCATCTTCCTTTTCAAAACTT
GCATTCATTCGCCGCTTCTCCCCGTTGCCCTCTGTTGGGGATATAACCCCGTGGTATACCGCCCTTATAGGGCCGGGTCA
GATCATTGGCGACTTATGAAGCTGGGCCTCAGATATGCCAAGACGATCAAGACACAGGACCAGAAGGGGCAGCCCACAAG
ATGGGCCGGCTTACGGCCCGAAGTCAGAAGGCGGC
>chr6D_1
ATTTCCTGTTCAAATGGATCTGGAAGACTTCTAACAGACTAAGGCATACAATTTTCTTCTGGCTGCTATTACATGATAGA
GTCAAGACCAGAAATTTGTT---GAGAAAGA---ATATACATGTGGACAACTATAATTGTGTTTACTGTAGGGAGCACAC
GGAAGAAACCTTGAGGCATCTTTTCTCGGATTGTACCTTTGCACAAGAATGCTGGGAATGCATTGTTCCAAACAGAAAGC
TAGGAATATCAAGCTTGGATGACATCATGATTCTGCACTCTTCTCTCCCAAAAGAATTTGCTTTGGACATTATCATCCAA
GAATATTGGAGAATTTGGACATTGAGAAATGGAAAGATTTTTAGACAGGAGGTGCC-AGTATTAACTGCCGGAAGTATTG
GGTCAAAGAAGATTTAGTCCTTATGAAACACAGAATCGACGTAAATTTTTTGGACAGTTTTAAGGAATGGGCTGCTACAC
ATCTATGATGTTTGTAGAGGATGTGGTTACTTTTACTTAACTTTATCATGTTTCTGAGGCTAGGAATTGGATAAGTAGCT
C-------------------------------------------------------------------------------
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-----------------------------------
>chr6B_1
ATTTGCTGTTCAAATGGATCTAGAAGACTTCTAACAGACTAAGGCA-AAAAA-TTCTTCTGACTACTATCACATGATAGA
ATCAACATCAGAAGTTTGTTGAGGAGAAAGA---ATATGCATCTAGACAACTATAATTGTATTCAACGTAGAGAGTACAC
GGAAGAACCCTTGAGGCATCTTTTCTGGGATTGTACCTTTGCACAAGAATGCTAGGAGTGCATTGTTCAAAATAGAAAAC
TAGGAATATCAAGCTTCGATGACATTATGATACTACAATCTTCTCTCCCAAAAGAATTTGCCCTGGACATTATTATCCAA
GGATG-TTGAGGAATTTGACACTAAGAAATGGAAAGATTTTTAGACATGAGGTGCCAAGTATTAACTGCTGGAAAT-TTG
GGTCAAAGAAGATTTGGTTCTATTACAACACATAATCAAAGCAAAAAATTTGGACAGTTTTATGGAATGGACTGCTACAC
ATCTATGATGTTTGTAGAGGATATAGTTATTGATCCTTAATGTTATCATGTTCTCGAGACTAGGAATTGGATAAGTA---
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-----------------------------------
>chr7D_6
-----CTGTTTAAATGGATTTGGAAGACTTCAAATAGATTAAGGCATAAAATCTTTTTCTGGCTGCTTCTTCATGATAGA
ATCAACATCGGCAATTTGTTGAAAAGAAAGA---ATATGCATCTGCATGACTACAATTGCATTCAATGTAGGGAGAATTC
TGAAGAAACTTTGAGGCACCTTTTCTGGGATTGTACCTTTGCACAAGAATGCTGGAAATGCATTGTTCCAAACAAAAAAT
TAGGAATATCGAGCCTTGATGACATTATGATTTTACACTCCTATCTCCCAAAAGAATTTGCTCTAGACATTATTATCCAA
GGATGTTTGAGAATCTGGACTCTGAGAAATGGAAAGATTTTCAGAAAGGAGGTGCCGAGTATTAACTGCTGGAAATATTG
GGTCAGAGAAGATTTCGGTCTTCTACAACACAGGATCAAAGGAAAAAATTTGGACAGATTCAAGGATTGGGTTTCTACAC
ATCTATGATGATTGTAGAGGATGTAATTTTTGATCTTTAATGTTATCATGTTCCCAAGACTAGGAATTGGATAAGTAC--
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-----------------------------------
>chr6A_7
------TGTTCAAATGGATCTGGAAGACTTCTAACAGACTAAGGCAAAAAAA-ATCTTCTGGCTACTATTACATGATAGA
ATCAACATCATAAATTTGTTGAGGAGAAAGA---ATATGCATCTGGACAACTATAATTGTATTCAATGTATATTGTACAT
GGAAGAAACCTTGAGGCATCTTTTCTCGGATTGTACCTTTGCACAAGAATGCTGGGAATGCATCGTTCCAAACAGAAAAC
TAGGAATATCAAGCTTCGATGACATTATGATATTGCACTCTTCTCTCCCAAAAGAATTTTCCCTGGTCATTATTATCCAA
GGATGTTGGAGAATTTGGACACTGAGAAATGGAAAGATTTTTAGACAGGAGGTGCCAAGTATTAATTGCTGGAAGTTTTG
GGTCAAAGAAGATTTGGTTCTATTACAAGACAGAATCAAAGCAAAAAAATTGGACAGTTTTAAGGATGGG-CTGCTACAC
ATCTATGAGGTTTGTAGAGGATATAGTTATTGCTCCTTAATGTTATTATGTTCCCGAGACTAGGAACTGGATAAGTA---
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-----------------------------------
>chr7B_35
----------------------------------TAGATTAAGGCATAAAATCTTTTTCTGGCTGCTTCTTCATGATAGA
ATCAACATCGGGAATCTGTTGAAAAGAAAGA---ATATGCATCTGGATGACTACAATTGCCTTCAATGTAGGGAGAATTC
TGAAGAAACTTTGAGGCACCTTTTCTGGGATTGTACCTTTGCACAAGAATGCTCGAAATGCATTGTTCCAAACAGAAAAT
TAGGAATATCGAGCCTTGATGACATTATGATTTTACACTCCTATCTCCCAAAAGAATTAGCTCTGGACATTATTATCCAA
GGATGTTTGAGAATCTGGACTCTGAGAAATGGAAAGAGTTTCAGAAAGGAGGTGCCGAGTATTAACTGCTGGAAATATTG
GGTCAGAGAAGATTTTAGTCTTCTACAACACAGGATCAAAGGAAAATTTTTGGACAGATTCAATGATTGTATTTCTACAC
ATCTATGATGATTGTAGAGGATGTAGTTTTTGATCTTTAATGTTATCATGTTCCCAAGACTAGGAATTGGATAA------
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-----------------------------------
>chr6A_479
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------GATGTTTGTAGAGGATAAATTAGATTTTTCATAACGTTATCATGTTCCCGAGGCCAGGAATTGGATAAGTA---
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GTTCTTAGTGTTTTATTTTTCTTTTCTTTGTAAATATTTTGTATTCTTGGACTTAATTAATGGAAAAGTACCGTAGAACA
GTTCAACGGTTTCGGCTTAAAAAAAACCGTGCAGTATCGTTTACCATGCTATAAGCTAGCAATTGCTAATGTATGGTCGG
CGCCTGAAACTTGACCATAATTCAAAGATTAATCCTATTTCCGCCGCCACGCAGCTACGGGTGGGCGGCTGCCGCGCTCT
ACTTCTAGAGCTCTCACGCGCGGATCGACTATATATATTTACTG-CCGCCCGGGCGGAACACCTCA-CTGCCACAGCAAA
CAA-GACAGCTTGTGAAGCAGCTACACATACAAGCAAACGTTAGTGAGTGAGCATGCCTGCTCTGAACGGCGGGGGAGGG
TCCTGCTCACAGGGCGTCGTGGTGTCCCTCGTGTCGGCGCTCGTGTTCTGCGTCCTCGTCGCCACCGTCAGCGCCTGGAA
GGCGTTCGCGTTCACAGGCCTGGCGCTGGCCGCCTTGGTCGCCCTCGAGTGCCTCGCGCCCGAGAGCTGGCGCGACGGGC
GGAGGGGCGGCGCTGG---CGCCGCCGCCGAGGGCGTGGCTTGGGCAGCATCCCGACTCGGCGGGCTCGGGAAGGCCGGG
ATCGAGTCGCTGCCAACGTTCGCGTACGCATCCCGTCGCCCCGTGGCCGGTGGCGACCTCGAGTGCGGGGGCGCCCAACC
CCAGACTTGCTCCGTGTGCCTGGAAGATATCGGCGACGGCGAGATGGTGCGGCAGCTGCCGACGTGCAAGCACCTCTTCC
ATGTCGGGTGCATTGACATGTGGCTACACTCGCACACCACTTGCCCTCTCTGCCGTTGCGACCTCTCGCCACAGCGGACG
TGTAACGGCAAGGTGACAGCTGTAGGGATCGAACCGCCTGTTGTTTAGCCCCATATATAGACAAGACAGTTTTGTGAACG
TCATGTCTGGAGTGCAAATAAAGTGTGTTTACTGTTTAGGGCTCGTGCTTCAGACTGCCCGCCGGTGGTAAGTGGTAGTA
CTAACAATTAACATGTTTTGTCTTGTTCATCAGTAGTGAGCGATCAGAC-------------------------------
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>chr6B_761
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---------------------------------------------------TAAGCTAGCAACTGCTTGCATATGGTCGG
CGCGTGAAACTTGACCAGAATTCAAAGTTCTAGTTC---TCGAGCGCCACGCAGCTACGGGCGGGCGGCTGCCGCGCTCT
AGTTCT-GAGCTCCCACACGCGGATCGACTATATATATTTCCTG-CCGCCCGGGCGGAGCACCTGCGCTGCCACAGCAAA
CAAAGACAGCCTGTGAAGCAGCTACACATACAGGCAAACGTTCGTGAGTGAGCATGCCTACTCTGAACGGCGGGGGCGGG
TCCTGCTCACAGGGCGTCGTGGTGTCCCTCATGTCGGCGCTCGTGTTCTGCGTCCTTGTCGCCACCGTCAGCGCCTGGAA
GGCCTTCGCGTTCACAGGCCTGGCGCTGGCCGCCTTGGTCGCCCTCGAGTGCCTGGCGCCCGAGAGCTGGCGCGATGGGC
GGAGGGGCGGCGCGGG---CGCCGCCGCCGAGGGCGTGGCTTGGGCGGCATCCCGGCTCGGCGGGCTCGGGAAGACCGGG
ATCGAGTCG-----------------------------------------------------------------------
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>chr6B_1272
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----AGTCGCTGCCCACATTCGCGTACGCGTCCCGCCGCCCTGTGGCCGGTGGCGACCTCGAGTGCGGGGGCGCCCAAGC
CCAGACGTGCTCCGTGTGCCTGGAAGATCTCGGCGACGGCGAGATGGTGCGGCAGCTGCCGACGTGCAAGCACCTCTTCC
ATGTCAGGTGCATTGACATGTGGCTGCACTCGCACACCACTTGCCCTCTCTGCCGTTGCGACCTCTCGCCACAGCGGACG
TGTAACGGCAAGGTGACAGCTGTAGGGCTCGAACCGCCGGTTGCTTAGCCCCGTATACAGACAGGACAGTTTTGTGAACG
TCA-------------AATAAAGTTTGTTT-------AGGATTCGTGTTTCAGGCTGCCTGCCGGTGGTAGGTGGTACTA
C-------TAACATGTTTTGTCCTGTTCACA---AGTGACCGATCCGACCCTTGAAATATAACGTGGGCCTTGGGCCATC
TAACAATTTTGAAAACTTTGAAGGGGTCATGTTGGCTAAATGGCTAGGTGATCCGAAGTTTAGTAACATCTC-GATTTGA
AGGAAGAGTTGGACCTAAGGGTGTTTCTTTCAT-----------------------------------------------
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-----------------------------------
>SNPs
----------------------------------------S--------S--------------S-----S---------
------------------S-------S-S--SSS---------------------------SS-------SSS----S--
S--------------S-----------------------------------------------------------S----
---------------S------S---------------SS-S-S--S--------------------S--------S--S
-----S-----------------------------S--S--------S--------S-SS--------------------
-S----------S----S------------S--------------S--------S-------S-S------S-------S
---------------S-------------------------------------------------------S------SS
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------------------------------------------------S----------------------------
----S--------------------SS---------------------S----------------------S--------
------------------------------------------------------------------------------S-
------S--------------S--------------------SSS-------------------S---------------
----------------------S---------------------------------------------------------
--------------------------------------------S-----------------S-----------------
------------------------------------------------------------------S-------------
---S------------SSS---------------------------S---------------------------------
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----------------------------------------S--------S------------SS--S------S---S--
---------S-S-S-----S---------------S---S--S-------S--S--------------S-S-S-------
-S------------S-S-------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_552
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----------------------------------------------------CCCGAGGCTAGGAATTGGAG--------
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>reverse_2283
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------------------------------------------ACGTTCCACATGCCTTCCAT------------------
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-----------------------------------
