>input_sequence_76131
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--------------------ATGGCCGGCGAGGACGAGGAGTGGAGCGAG---GACGAGGAGTTGAACGAGGAGGACCAG
AAGGCTAGGGCGGCCTGGGATGAGATGGTGGATCAGTTTCGGGCTCGGCAGAGGGCCAGGCTTGGCGGCGGTAAACCCAT
GAAACGGCTGCAACACGAGGACGTCATCTACATCCTGTCGCTGGAGAAGGACGGCAATGACTACGTCACCGGCCGCGGCC
ACCGGTACACGGCCGAGGAGATGAAGAGTATGGTGGACATGGACATCAAGGGCGACGACGAGATCGATGAGCGGCAGGCC
AGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGACGACGACGACTACGTGGGCGACGACGACGACTACTTAGA
CGAGGCCAAGAAGTTGAAAGAGATACAGTGGGAGAGACTCATGGCGCCCGTCTTGAGTCGACGTCTTGCTCGCATGGGAG
TCACCGCCGAAAACGACGACGATGAGGAGGACTACTA------------------CT------------------CGGAG
CTGGGAGAGGAGGAGGACGAGAATCCAGATGACAAACAGATACCA------GCAGAATAG--------------------
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>chr6B_1_TraesCS6B01G473600
CAATATGTAATAGTTATTGCAACACAAGGAAGGCGAGGCAAAAAGTCACCCTATTACAACCAATACATGCTTTGTTGCAA
AAGTATCTATGACTAGCGCCACATGTCAGAGTTGTTGCAATATATGTCTAAATATTACCACAAATATGTACTTTGTTGCA
ATACCTAGCCATTATTGCAACAAGATGACCAATTCATGCAACGGGACGGAATTGTTGCAATATCACTACCATATTACAAC
GCCGATGCAGCTTGTGGCATTACATGGCTTCTATTGCAACAAAACAAGTACTTAGCGCGATGAAACAAAATTGTGGCAAT
ATGTAGATCCTATTACCACAAACTGGAATTTTGTGGTAATATAGCATTTTATTGCAACAAAACATGGTTGTAGCAATATT
TTTTGTTGCAATAGACCGGAATCCTTGTAGTGCGCGTCGGACATCGCAGACATATAGGGCCGGTTAGAGGGATCGGTTGG
GTGGCAAAAAGGTGATCGGGTCGTCTTATCGAACGTGTATATGAAGGGTATGAAGGGTCCAGTTGTAGATGCTCTTCGGT
TCCATTGGGTTGCCCCGCCTTGGCGTGTCCGTGTCCTAATATGTGTGCGGTTTGCGTGCAACATGAGTCTAGTACGTAGA
GTATTAGTTGTAGCCGTGTAGGCTTCCTAATTGAGTCTGGCTGCTAGTAATTTTCATCAAGATTGCCGTGTTTTGTTCAA
AAAAAAT--AATCAAGATTGCCGTGTGGACGTGTG-GTTAATAGTTTGGGCAAGATTCGTCGAGTTGAAGGAAAAGTAGG
AATAG--------------------------------GAGTAGTAAAAGTCTAGCCTGGTACGCGTGTA--TATATATAT
G--TGCCGTGGCAGACATTGAGAAGAGAAGAAAACAGAAGGTACGAG----ATATATATACC-----CTT-TGTTAAAAG
-----------TGTGTTCGTGGTGTGTTTTCTGTGACCGATCCGTGGGCGAGATCAAAGTCAAACGTCACCTACGCAACA
TCCAACTTGGCTGATCGGTGATGGCCGGCGAGGACGAGGAGTGGAGCGAG---GACGAGGAGTTGAACGAGGAGGACCAG
AAGGCTAGGGCGGCCTGGGATGAGATGGTGGATCAGTTTCGGGCTCGGCAGAGGGCCAGGCTTGGCGGCGGTAAACCCAT
GAAACGGCTGCAACACGAGGACGTCATCTACATCCTGTCGCTGGAGAAGGACGGCAATGACTACGTCACCGGCCGCGGCC
ACCGGTACACGGCCGAGGAGATGAAGAGTATGGTGGACATGGACATCAAGGGCGACGACGAGATCGATGAGCGGCAGGCC
AGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGACGACGACGACTACGTGGGCGACGACGACGACTACTTAGA
CGAGGCCAAGAAGTTGAAAGAGATACAGTGGGAGAGACTCATGGCGCCCGTCTTGAGTCGACGTCTTGCTCGCATGGGAG
TCACCGCCGAAAACGACGACGATGAGGAGGACTACTA------------------CT------------------CGGAG
CTGGGAGAGGAGGAGGACGAGAATCCAGATGACAAACAGATACCA------GCAGAATAGGGTTGATTCAGCTTGCAAAA
TAGTTTTTTTTTACCGGTTCCAGTAGCTACCGGTGAGGAATCCACCA----TGCACGTCGTCAAGATTGATACCGTCTTA
CACGCTATAACATGTAAACTCTTATATAGTACATCCTCCGTTTCTGAATGTAAGTCTTTTTCACTACAAACTACTCCCTC
CGTTCCTAAATATTTGTCCTTTTAGACATTTCAAATGATTAACACATACGGATGTATGTAGACATATTTTAGAGTGTAGA
TTCATTCATTTTACTTCGTATGTAGTCACTTGTTAAAATGCCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTACATTT
GAATGTATATAGACACAATTTAGAGTGTAGATTCGCCATTTTGTTCCGTATGTATTTCATAGTAAAATCTCTAAAAAGAC
TTATATTTAAGAACAAAAGGAGTACCTACAACCGACAAAGCACTGTCAGAATGTACAAATACATATATGGACCCTATTGA
TGTGCAGCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCCCATGGCAA-----------------------AGATATCTTTTGAATCATAACTCCCT
TTTTTTAATGGTGGCTCATGTTGTCCAGGTGCTCCATGAGCAGCTCT
>chr6D_433
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--------------------------------CGCGTCGGACATCACAGACATATAGGGCCGGTTAGAGGGGTCGGTTGG
GTGGCAAAAAGGTGATCGGGTCGTCCCATCGAACGTGCATATGAAGGGTATGAAGGGTCCAGTTGTAGATGCTCTTCGGT
TCCATTGGGTTGCCCCGCCTTGGCGTGTCCGTGTCCTAATATGTGTGCGGCTTGCGTGCAACATGAGTCTAGTACGTAGA
GTATTAGTTGTAGCCGTGTAGGCTTCCTAATTGAGTCTGGCTGCTAGTAATTTTCATCAAGATTGCCGTGTTTTGTTCAA
AAATAAATAAATCAAGATTGCCGTGTGGACGTGTG-GTTAATAGTTTGGGCAAGATTCGTCGAGTTGAAGGAAAAGTAGG
AGTAGGACTCCTAGCTAGGATAGATCGGATGCGATCCGAGTAGTAAAAGTCTAGCCTGGTATGCGTGTATATATATATAT
G--TGCCGTGGCAGTCATTGAGAAGAGAAGAAAACAGAAGGTACGAG----ATATATATACC-----CTT-TGTTAAAAG
-----------TGTGTTCGTGGTGTGTTTTCTGTGACCGATCCGTGGGCGAGATAAAAGTCAAACGTCACCTACGTAACA
TCCAACTTGGCTGATCGGTGATGGCCGGCGAGGACGAGGAGTGGAGCGAG---GACGAGGAGTTGGACGAGGAGGACCGG
AAGGCTACGGCGGCCTGGGATGAGATGGTGGATCGGATTCGGGCTCGGCAGAGGGCCAGGCTTGGCGGCGGTAAACCCAT
GAAACGGCTGCAACACGAGGACGTCATCTACATCCTGTCGCTGGAGAAGGACGGCAATGACTACGTCACCGGCCGCGGCC
ACCGGTACCCGGCCGAGGAGATGAAGAGTATCGTGGACATGGACATCAATGGCGACGACGAGATCGATGAGCGGCAGGCC
CGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGCCGACGACTACTACCTGGGCGACGACGACGAGTACCTAGC
CGAGGCCAAGAAGTTAAGCGACATACGGTGGGAGAGACTTATGGCGCCCGTCTTGAGTCGCCGTCTTGCTCGCATGGGAG
TCACCGCCGAAAACGACGACAACGAGGAGGACTACTA------------------CTTGGACGAGGAGGACTACTCGGAG
GTGGGAGAGGAGGAGGGCGAGAATCCAGATGACAAACAGATACCA------GCAGAATAGGGTTGATTCAGTTTGCAAAA
TAG--TTTTTTTACCGGTTCCGGTAGCTACCGGTGAGGAATCCACCATCCATGCATGTTGTCAAGATTGATACCGTCTGA
TACGCTGTAACATGTAAACTCTTAT-------------------------------------------------------
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>chr6A_669
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----------------------------AATTGAGTCTGGCTGCTAGTAATTTTCATCAAGG------------------
-----------------TTGCCGTGTGGACGTGTTAGTTATTAGTTTGGG--AGATTTGTTGAGTTAAAGGAAAAGTAGG
AGTAGGAGTC----CTAGGATAGATCTGATGCGATCCGAGTAG---------------------------------ATAT
ACATGCCGTGGCAGACATTGAGAAGAGAAGAAAACAGAAGGTACGAG----ATATATACACC-----CTTCTGTTAAAAG
-----------TGTGTTTTCTC----TTTTCTGTGACCGATCTGTGGGCGAGATCAAAGTCAAACATCACCTACGCAACA
TCCAACTTGGCTGATCGGTGATGGCCGGCGAGGACGAGGAGTGGAGCGAG---GACGAGGAGTTGAATGAGGAGGACCAG
AAGGCTATGGCGGCCTGGGATGAGATGGTGGATCGGACTCGGGCTCGGCAGAGGGCCAGGCTTGGCGGCGGTAAACCCAT
GAAACGGCTGCAACACGAGGAGGTCATCTACATCCTGTCGCTGGAGAAGGACGGCAATGACTACGTCACCGGCCGCGGCC
ACCGGTACACGGCCGAGGAGATGAAGAGTATCGTGGACATGGACATCAAGGGCGACGACGAGATCGATGAGCGGCAGGCC
CGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGACGACGACTACTACGTGTGCAACGACGACCAGTACTTAGA
CGAGGCCAAGAAGTTGAAAGAGATACGGTGGGAGAGACTCATGGCGCCCGTGTTGAGTCGCCGTCTTGCTCGCATGGGAG
TCACCGCCGAAAACGACGACAACGAGGAGGACTACTATTCGGAGGAGG---ACTACT------------------CGGAG
CTGGGAGAGGCGGAGGGCGAGAATCCAGATGACCAACAGATACCA------GCAGAATAGGGTTGATTCAGTTTGCAAAA
TAGTTT-TTTTTACCGGTTCCGATAGCTACCCGTGAGGAATCCACCATCCATGCATGTTGTCAAGATTGGTACCGTCTGA
TACGCTGTAACATGTATACTCTTAT-------------------------------------------------------
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-----------------------------------------------------------------------------TGG
TGTACAGCTTTTTAAAGGGAGACCGTGGGTGTGCAGTGCTACA-TTGCTCTAAAGTACTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------
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-----------------------------------------------------------------------------CGT
TTTTGTATTGGTGGCTCATGTTGTCCAGGTGCTCCAT----------
>chr6D_803
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-------------------------------------GACTAGTAAAAGTCTAGCCTGGTGTGCGTGTGTATATATATAT
ATATGCCGTGGCAGACATTGAGAAGAGAAGAAAATAGAAGGTACAAG----ATATATATGCC-----CTT-TGTTAAAAG
-----------TGTGT-----------TTCCTGTGACCGATCCGTGGGCGAGA------TCAAACATCACCTACGCAACC
TCCAACTT-GCTGATCGGTGATGGCTGGCGAGGACGAGGAGTGGAGCGAC---GACGAGGAGTTGACCGAGGAGGACCAG
AAGGCTGCGGCGGCCTGGGATGAGATGGTGGATCGGGCTCGGGCTCGGCAGAGGACCAGGCTTGGCGGCGGTAGACCCAT
GAAACGGCTGCAACACGAGCATGTCATCTACATCCTGTCGCTGGAGAAGGACGGCATTGACTACGTCACCGGCGACGGCC
GCCGGCACACGCCGGAGAAGATGAAGAGTATCGTGGACATTGACATCAAGGGCGACGACGAGATCGATGAGCGGCAGGCC
AGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGACGACGACTACTACCTGGGCGACGACGATGAGTACCTAGA
CGAGGCCGATGCGTTGAGCAGGGAAAGAGAA---------------------------CGCCGTCTTGCTCGCATGGGAG
TCACCGTCCAAAACGACGACGACGACGAGAACTACTACTCGGAGGAGGATTACTACT------------------CGGAG
CTGGGAGAGGAGGAGGGCAAGAATCCAGATGACCAACGGATA--------------------------------------
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>chr6A_803
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-------------------------------------GAGTAGTACAAGTCTAGCCTGGTATGCGTGTATATATATA---
-CATGACGTGACAGACATTGGGAAGAGAAGAAAATTGAAGGCACATGATATATATATACACC-----CTT-TGTTAAAAG
TGTGTTCGTGGTGCGC-----------TTTCTGTGACCAATCCGTGGGCGAAA------CCAGACATCACCTATGCAACA
TCCAACTT-GCTGATCGGTGATGGCTGGCGACGACGAGGAGTGGACCGACGACGAGGAG---TGCACCGAGGAGTACGAG
AAGGCTGCGGCGGC---------GATCGTGGCTCGGGCTCGGGCTCGGCAGATGACCAGGCTAGGCGGCGCTAAACCCAT
GAAACGGCTGCAACACGAGCAGGTCATCTACATCCTGTCGCTGGAGAAGGACGGCATTGACTACGTCACCGGCCGCGGCC
ACCGGTACACGCCGGAGAAGATGAAGAGTATCGTGGACATCCACATGGAGGGCGACGACGAGATCGATGAGCGGCAGGCC
CGGGTGATGCGGCAGCTGAGTGAGAAGGGGTACGTCGTGGCCGACGACACCTACCTGGGCGATGACGAGGAGTACAAAGA
CGAATACAATAAGTTGAGCGAGATACGGTGGGAGAGACTCATGGCGCCCATCTTGAGTCGCCGTCTTGCTCGCATGGGAG
TCACCGCCGAAAACGACGACAACGAGGAGGACTACTATTCGGAGGAGG---ACTACT------------------CGGAG
CTGGGAGAGGCGGAGGGCGAGAATCCAGATGACCAACAGATACCA------GCAGAATAGGGTTGATTCTGTTTGCAAAA
TAG-TT-TTTTTACCGGTTCCGGTAGCTACCCGTGA-GAATCCACCATCCATGCATGTTGTCAAGATTGGTACCGTCTGA
TACGCTGTAACATGTATACTCTTAT-------------------------------------------------------
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-----------------------------------------------------------------------------TGG
TGTACAGCTTTTTAAAGGGAGACCGTGGGTGTGCAGTGCTACATTTGCTCTAAAGTACTCTCTCTTTCCC----------
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--------------------CCCCATGGCAAAGACTAGTAAATATTTGGATGATAGATACCTTCTGAATCAGAACTCCGT
TTTTGTATTGGTGGCTCATGTTGTCCAGGTGCTCCAT----------
>chr5A_806
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----------------------------------------TAGTAAAAGTCTAGCCTGGTGTGCGTGTATATATATATAT
--ATGCCGTGGCAGACATTGAAAAGAGAAGAAAATAGAAGGTACGAG----ATATATATACC-----CTT-TGTTAAAAG
TGTGTTCGTGGTGTGT-----------TTCCTGTGACCGATCCGTGGGCGAGA------TCAAACATCACCTGCGCAACA
TCCAACTTGGCTGATCGGTGATGGCCGGCGAGGACGAGGAGTGGAGCGAG---GACGAG---TTGACCGAGGAGGAGAAG
AAGGATGCGGCGGCCTGGGATGAGATGGTGGATCGGGCTCGGGCTCGGCAGAGGGCCAGGCTTGGCGGCGGTAGACCCAT
GAAACGGCTGCAACACGAGGACGTCATCTACATCCTGTCGCTGAAGAAGGACGGCATTGACTACGTCACCGACGACGGCC
GCCGGCACACGCCGGAGAAGATGAAGAGTATCGTGGACATCGACATCAAGGGCGACGACGAGATCGATGAGCGGCAGGCC
AGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGACGACGACTACTACCTGGGCAACGACGACGAGTACCTAGA
GGAGGACGATGCGTTGAGCAGGGAAAGAGAA---------------------------CGCCGTCTTGCTCGCATGGGAG
TCACCGTCCAAAACGACGACGACGACGAGAACTACTACTCGGAGGAGGATTACTACT------------------CGGAG
CTGGGAGAGGAGGAGGGCGAGAATCCAGATGACCAACGGATAGTACTAGCCGCAGAACAGGGTTGATTCAGTTTG-----
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>chr5A_851
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---------GGCAGACATTGAAAAGAGAAGAAAATAGAAGGTACGAG----ATATATATACCCTTTGCTT-TGTTAAAAG
TGTGTTCGTGGTGTGT-----------TTCCTGTGACCGATCCGTGGGCGAGA------TCAAACATCACCTGCGCAACA
TCCAACTTGGCTGATCGGTGATGGCCGGCGAGGACGAGGAGTGGAGCGAG---GACGAG---TTGACCGAGGAGGAGAAG
AAGGATGCGGCGGCCTGGGATGAGATGGTGGATCGGGCTCGGGCTCGGCAGAGGGCCAGGCTTGGCGGCGGTAGACCCAT
GAAACGGCTGCAACACGAGGACGTCATCTACATCCTGTCGCTGAAGAAGGACGGCATTGACTACGTCACCGACGACGGCC
GCCGGCACACGCCGGAGAAGATGAAGAGTATCGTGGACATCGACATCAAGGGCGACGACGAGATCAATGAGCGGCAGGCC
AGGGTGATGCGGCAGCTGAGTGAGAAGGGCTACGTCCAGGACGACGACTACTACCTGGGCAACGACGACGAGTACCTAGA
GGAGGCCGATGCGTTGAGCAGGGAAAGAGAA---------------------------CGCCGTCTTGCTCGCATGGGAG
TCACCGTCCAAAACGACGACGACGACGAGAACTACTACTCGGAGGAGGATTACTACT------------------CGGAG
CTGGGAGAGGAGGAGGGCGAGAATCCAGATGACCAACGGATAGTACTAGCCGCAGAACAGGGTTGATTCAGTTTG-----
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------------------------S--------
-------------------------SS----------S------------------------------------------
--------------------------------------------------S-----------------------------
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---S--S-------------------------------------------------------------------------
-S-----------------------------------------------------------S------------------
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-------S--------------------------S-S-------------------------------------------
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-------------------------------S------------------------------------------------
------------------------------------------------S----------------------S--------
--------------------------S---------------------------------S-------------------
----------------------S---------------------------------------------------------
----------------S------------------------------------------------------S--------
---------------------S---------------------------------S--S-------------------S-
S-----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S
---S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
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-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------------------------------S---S-------S------S-
----S--S-----------------------------SSSSSSSSSS
>forward_109
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---------TGACTAGCGCCACATGTCAG---------------------------------------------------
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>reverse_2108
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---------------------------ACAACCGACAAAGCACTGTC---------------------------------
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